KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:15 2014 Check: 00 .. Name: ENSP00000306864/1-673 Len: 676 Check: 2083 Weight: 1.00 Name: ENSBTAP00000055273/1-671 Len: 676 Check: 132 Weight: 1.00 Name: ENSTTRP00000008223/1-676 Len: 676 Check: 9100 Weight: 1.00 Name: bmy_02787T0/1-676 Len: 676 Check: 9627 Weight: 1.00 Name: BACU019488/1-616 Len: 676 Check: 3984 Weight: 1.00 // 1 50 ENSP00000306864/1-673 MCSRVP--LL LPLLLLL-AL GPGVQGCPSG CQCSQPQTVF CTARQGTTVP ENSBTAP00000055273/1-671 MHSRAPLRLL LPLLLLLPAL GPGVQGCPSG CQCNQPRTVF CTARRGTTVP ENSTTRP00000008223/1-676 MRSKTPPPLL LPLLLLLPVL EPRVRGCPSG CQCNQPQTVF CTARQGTTVP bmy_02787T0/1-676 MRSKTPPPLL LSLLLLLPAL EPRVQGCPSG CQCNQPQTVF CTARQGTTVP BACU019488/1-616 MRSKTPPPLL LSLLLLLPAL EPRVQGCPTG CQCNQPQTVF CTARQGTTMP 51 100 ENSP00000306864/1-673 RDVPPDTVGL YVFENGITML DAGSFAGLPG LQLLDLSQNQ IASLPSGVFQ ENSBTAP00000055273/1-671 LDVPPDTVGL YIFENGITTL DAGSFAGLPG LQLLDLSQNQ IASLPGGVFQ ENSTTRP00000008223/1-676 LDVPPDTVGL YIFENGITTL DAGSFAGLPG LQLLDLSQNQ IASLPGGVFQ bmy_02787T0/1-676 LDVPPDTVGL YVFENGITTL DTGSFAGLPG LQLLDLSQNQ IASLPGGVFQ BACU019488/1-616 LDVPPDTVGL YVFENGITTL DAGSFAGLPG LQLLDLSQNQ IASLPGGVFQ 101 150 ENSP00000306864/1-673 PLANLSNLDL TANRLHEITN ETFRGLRRLE RLYLGKNRIR HIQPGAFDTL ENSBTAP00000055273/1-671 PLANLSNLDL TANRLREITN ETFRGLRRLE RLYLGKNRIR HIQPGAFDVF ENSTTRP00000008223/1-676 PLVNLSNLDL TANRLREITN ETFRGLRRLE RLYLGKNRIH HIQPGAFDAL bmy_02787T0/1-676 PLVNLSNLDL TANRLREITN ETFRGLRRLE RLYLGKNRIR HIQPGAFDAL BACU019488/1-616 PLVNLSNLDL TANRLREITN ETFRGLRRLE RLYLGKNRIR HIQPGAFDAL 151 200 ENSP00000306864/1-673 DRLLELKLQD NELRALPPLR LPRLLLLDLS HNSLLALEPG ILDTANVEAL ENSBTAP00000055273/1-671 DRLLELKLQD NELRALPPLR LPRLLLLDLS HNGLSALEPG VLDTANVETL ENSTTRP00000008223/1-676 DHLLELKLQD NELRALPPLH LPRLLLLDLS HNSLPALEPG ILDTANVEAL bmy_02787T0/1-676 DHLLELKLQD NELRALPPLR LPRLLLLDLS HNSLPALEPG ILDTANVEAL BACU019488/1-616 DHLLELKLQD NELWALPPLR LPRLLLLDLS HNSLPALEPG ILDTANVEAL 201 250 ENSP00000306864/1-673 RLAGLGLQQL DEGLFSRLRN LHDLDVSDNQ LERVPPVIRG LRGLTRLRLA ENSBTAP00000055273/1-671 RLAGLGLRHL DEGLFGRLRN LHNLDVADNQ LERVPPAVRG LRGLTRLRLA ENSTTRP00000008223/1-676 RLAGLGLQRL DEGLFGRLRN LHDLDVADNQ LELAPPAIRG LRGLTRLRLA bmy_02787T0/1-676 RLAGLGLQRL DEGFFGRLRN LHDLDVADNQ LELVPPAIWG LRGLTRLRLA BACU019488/1-616 RLAGLGLQRL DEGLFGRLRN LHDLDVADN- ---------- ---------- 251 300 ENSP00000306864/1-673 GNTRIAQLRP EDLAGLAALQ ELDVSNLSLQ ALPGDLSGLF PRLRLLAAAR ENSBTAP00000055273/1-671 GNTRIAQLWL EDLAGLAALQ ELDLSNLSLQ ALPHELSTLF PRLRLLEAAR ENSTTRP00000008223/1-676 GNTRIAQLRP EDLAGLAALQ ELDLSNLSLQ ALPHELSVLF PRLRLLAAAR bmy_02787T0/1-676 GNTRIAQLRP EDLAGLAALQ ELDLSNLSLQ ALPHELSVLF PRLRLLAAAR BACU019488/1-616 ---------- ---------- ---------- ---------X PRLRLLAAAR 301 350 ENSP00000306864/1-673 NPFNCVCPLS WFGPWVRESH VTLASPEETR CHFPPKNAGR LLLELDYADF ENSBTAP00000055273/1-671 NPFNCVCPLS WFGPWVRESR LTLASPEETR CHFPPKNAGR LLLDLDYSDF ENSTTRP00000008223/1-676 NPFNCVCPLS WFGPWVRESR VALASPEETR CHFPPKNAGR LLLDLDYADF bmy_02787T0/1-676 NPFNCVCPLS WFGPWVRESR VALASPEETR CHFPPKNAGR LLLDLDYADF BACU019488/1-616 NPFNCVCPLS WFGPWVRESR VALASPEETR CHFPPKNAGR LLLDLDYADF 351 400 ENSP00000306864/1-673 GCPATTTTAT VPTTRPVVRE PTALSSSLAP TWLSPTEPAT EAPSPPSTAP ENSBTAP00000055273/1-671 GCPATTTTAT APTTRAPVQE PTLPPSSLAP TQLRPTELAT EAPSQPPPAP ENSTTRP00000008223/1-676 GCPATTTTAT VPTMRPTVWA PTAPPSSMAP TWLSPTEPTT EALSRLPPAP bmy_02787T0/1-676 GCPATTTTAT VPTMRPTVWA PTAPPSSMAP TWLSPTEPTT EALSRPPPAP BACU019488/1-616 GCPATTTTAT VPTMRPTVWA PTAPPSSMAP TWLSPTEPTT EALSRPPPAP 401 450 ENSP00000306864/1-673 PTVGPVPQPQ DCPPSTCLNG GTCHLGTRHH LACLCPEGFT GLYCESQMGQ ENSBTAP00000055273/1-671 PTAGPVPPPR DCPASICLNG GTCHLGARGH LECLCPQGFT GLYCEGRVRP ENSTTRP00000008223/1-676 PTMGPAPQPQ DCPASICLSG GTCHLGARGH LECLCPEGFT GLYCESRVRP bmy_02787T0/1-676 PTMGPAPQPR DCPASICLSG GTCHLGARGH LECLCPEGFT GLYCESRVRP BACU019488/1-616 PTMGPAPQPR DCPASICLSG GTCHLGARGH LECLCPEGFT GLYCESRVRP 451 500 ENSP00000306864/1-673 GTRPSPTPVT PRPPRSLTLG IEPVSPTSLR VGLQRYLQGS SVQLRSLRLT ENSBTAP00000055273/1-671 GPRPSPAPAT ---PRPLPLG IEPASPTSLR VGLQRFQQGS AVQLKSLRLT ENSTTRP00000008223/1-676 GPRPSPAPAT MQPPQPLPLG IEPASPTSLR VGLQRYLQGS TVQLRSLRLT bmy_02787T0/1-676 GPRPSPAPAT MRPPQPLPLG IEPASPTSLR VGLQRYLQGS TVQLRSLRLT BACU019488/1-616 GPRPSPAPAT MRPPQPLPLG IEPASPTSLR VGLQRYLQGS TVQLRSLRLT 501 550 ENSP00000306864/1-673 YRNLSGPDKR LVTLRLPASL AEYTVTQLRP NATYSVCVMP LGPGRVPEGE ENSBTAP00000055273/1-671 YRNLSGPDKR PVTLRLPASL AEYTVTQLRP NATYSICVRA LGAGRVPEGE ENSTTRP00000008223/1-676 YRNLSGPDKR PVTLRLPASL AEYTVTQLRP NATYSICVRP LGAGRVPESE bmy_02787T0/1-676 YRNLSGPDKR PVTLRLPASL AEYTVTQLRP NATYSICVRP LGAGRVPESE BACU019488/1-616 YRNLSGPDKR PVTLRLPASL AEYTVTQLRP NATYSICVRP LGAGRVPESE 551 600 ENSP00000306864/1-673 EACGEAHTPP AVHSNHAPVT QAREGNLPLL IAPALAAVLL AALAAVGAAY ENSBTAP00000055273/1-671 EACGEARTPP AVRSNHAPVT QAREGNLPLL IAPALAAVLL AVLAAVGAAF ENSTTRP00000008223/1-676 EACGEARTPP AVRSNHAPVT QAREGNLPLL IAPALAAVLL AVLAAVGAAF bmy_02787T0/1-676 EACGEARTPP AVRSNHAPVT QAQEGNLPLL IAPALAAVLL AVLAAVGAAF BACU019488/1-616 EACGEARTPP AVRSNHAPVT QAREGNLPLL IAPALAAVLL AVLAAVGAAF 601 650 ENSP00000306864/1-673 CVRRGRAMAA AAQDKGQVGP GAGPLELEGV KVPLEPGPKA TEGGGEALPS ENSBTAP00000055273/1-671 CVRRGRAAAA VVQGKGQVGP GAGPLELEGV KAPLEPDPKA LEGGGEAPTG ENSTTRP00000008223/1-676 CVRRGRAAAA VAQGKGQVGP GAGPLELEGV KAPLEPGPKA TEGGGEVPPA bmy_02787T0/1-676 CVRRGRAAAA VAQGKGQVGP GAGPLELEGV KAPLEPGPKA TEGGGEAPPG BACU019488/1-616 CVRRGRAAAA VAQGKGQVGP GAGPLELEGV KAPLEPGPKA TEGGGEAPPG 651 700 ENSP00000306864/1-673 GSECEVPLMG FPGPGLQSPL HAKPYI ENSBTAP00000055273/1-671 G--LEVPLMG YSGPGPQGPL PAKPYI ENSTTRP00000008223/1-676 GPECEVPLMG YSGPGPQGSL PAKPYI bmy_02787T0/1-676 GPECEVPLMG YSGPGPQGPL PAKPYI BACU019488/1-616 GPECEVPLMG YSGPGPQGPL PAKPYI