KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:21 2014 Check: 00 .. Name: ENSP00000275525/1-259 Len: 263 Check: 5666 Weight: 1.00 Name: ENSBTAP00000055280/1-263 Len: 263 Check: 8371 Weight: 1.00 Name: bmy_21272T0/1-148 Len: 263 Check: 7472 Weight: 1.00 Name: BACU012581/1-157 Len: 263 Check: 7998 Weight: 1.00 Name: ENSTTRP00000001888/1-230 Len: 263 Check: 6966 Weight: 1.00 // 1 50 ENSP00000275525/1-259 MSEVPVARVW LVLLLLTVQV GVTAGA--PW QCAPCSAEKL ALCPPVSASC ENSBTAP00000055280/1-263 MPEVLAVRAW PLLLSLAVQL GATVGAPQPW RCAPCSAERM ALCPPVPASC bmy_21272T0/1-148 MPEVPAVRAW PLLLSLAVQL G--------- ---------- ---------- BACU012581/1-157 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001888/1-230 ---------- ---------- ---------- ---PCSAERL ALCPPVPASC 51 100 ENSP00000275525/1-259 SEVTRSAGCG CCPMCALPLG AACGVATARC ARGLSCRALP GEQQPLHALT ENSBTAP00000055280/1-263 PELTRSAGCG CCPMCALPLG AACGVATARC ARGLSCRALP GEPRPLHALT bmy_21272T0/1-148 ---SAAAGAP ACP------- ---------- ---------- ---------- BACU012581/1-157 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001888/1-230 PELTRPAGCG CCPTCALPLD AACGVATARC AHGLSCRALP GEPRPLYALT 101 150 ENSP00000275525/1-259 RGQGACVQES DASAPHAAEA GSPE--SPES TEITEEELLD NFHLMAPSEE ENSBTAP00000055280/1-263 RGQGACMTTP SDEATDTKDT TSPENVSPES SEITQEQLLD NFHLMAESSE bmy_21272T0/1-148 ------RPAP R---PQAEDP AIPENVSPES SEMTQEQLLD NFHLMVESSE BACU012581/1-157 ------MPAP SAEATEAEDP AIPENVSPES SEMTQEQLLD NFHLMAESSE ENSTTRP00000001888/1-230 RGQGACMPAP SAEATEAKDP ATLENMSPES SEMTQEQLLD NFHLMAASSE 151 200 ENSP00000275525/1-259 DHSILWDAIS TYDGSKALHV TNIKKWKEPC RIELYRVVES LAKAQETSGE ENSBTAP00000055280/1-263 DLPILWNAIS NYESLRALEI SDVKKWKEPC QRELYKVLDR LAREQQKAGD bmy_21272T0/1-148 DLPILWNAIS NYESMKALET TDIKNRKEPC QRELYQVLDR LAREQQKSGD BACU012581/1-157 DLPILWNAIS NYESIKALET TDIKNRKEPC QRELYQVLDR LAREQQKAGD ENSTTRP00000001888/1-230 DLPILWNAIS NYESMRALEI TDVNNRKEPC QRELYKVLDR LAREQQKAGD 201 250 ENSP00000275525/1-259 EISKFYLPNC NKNGFYHSRQ CETSMDGEAG LCWCVYPWNG KRIPGSPEIR ENSBTAP00000055280/1-263 KLYKFYLPNC NKNGFYHSKQ CETSLEGEPG LCWCVYPWSG KRILGSVAVR bmy_21272T0/1-148 KLYKFYLPNC NKNGFYHSKQ GN-------- ---------- ---------- BACU012581/1-157 KLYKFYLPNC NKNGFYHSKQ CETSLEGEPG LCWCVYPWSG KKILGSVVIR ENSTTRP00000001888/1-230 KLYKFYLPNC NKNGFYHSKQ CETSLEGEPG LCWCVYPWSG KKILGSVAIR 251 300 ENSP00000275525/1-259 GDPNCQIYFN VQN ENSBTAP00000055280/1-263 GDPKCQQYFN LQN bmy_21272T0/1-148 ---------E LYN BACU012581/1-157 GDPKCHQYFN LQN ENSTTRP00000001888/1-230 GDPKCHQYFN LQN