KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:24 2014 Check: 00 .. Name: ENSP00000216267/1-1058 Len: 1188 Check: 8143 Weight: 1.00 Name: ENSBTAP00000055298/1-1182 Len: 1188 Check: 324 Weight: 1.00 Name: bmy_22272T0/1-737 Len: 1188 Check: 7060 Weight: 1.00 Name: BACU013495/1-1043 Len: 1188 Check: 5366 Weight: 1.00 Name: ENSTTRP00000013157/1-1187 Len: 1188 Check: 9605 Weight: 1.00 // 1 50 ENSP00000216267/1-1058 MRRKGRCHRG SAARHPSSPC SVKHSPTRET LTYAQAQRMV EIEIEGRLHR ENSBTAP00000055298/1-1182 MRRKGRGHR- AAARHPSSPG STKHSPTRET LTYAQAQRMV EIEIEGRLHR bmy_22272T0/1-737 MRRKGRGHR- AAARHPSSPG STKHSPTRET LTYAQAQRMV EIEIEGRLHR BACU013495/1-1043 ---------- ---------- ---------- --------MV EIEIEGRLHR ENSTTRP00000013157/1-1187 MRRKGRGHR- AAARHPSSPG STKHSPTRET LTYAQAQRMV EIEIEGRLHR 51 100 ENSP00000216267/1-1058 ISIFDPLEII LEDDLTAQEM SECNSNKENS ERPPVCLRTK RHKNNRVKKK ENSBTAP00000055298/1-1182 ISIFDPLEII LKDDRHGPGD ERVQQHKRTA SGRPVCLRTK RHKSNRAKKK bmy_22272T0/1-737 ISIFDPLEII LEDDLTAQEM SECNSNKENS ERPPVCLRTK RHKNNRVKKK BACU013495/1-1043 ISIFDPLEII LEDDLTAQEM SECNSNKENS ERPPVCLRTK RHKNNRVKKK ENSTTRP00000013157/1-1187 ISIFDPLEII LEDDLTAQEM SECNSNKENS ERPPVCLRTK RHKNNRVKKK 101 150 ENSP00000216267/1-1058 NEALPSAHGT PASASALPEP KVRIVEYSPP SAPRRPPVYY KFIEKSAEEL ENSBTAP00000055298/1-1182 GDAPPSAHGA PASASALPEP KVRVVEYSPP SAPRRPPVYY KFVEKSAEEL bmy_22272T0/1-737 NEAPPGAHGA PASTGTLPEP TVRVVEYSPP AAPRRPPAYY KFVEKSAAEL BACU013495/1-1043 NEAPPGAHGA PXX------- ---------- --PRRPPAYY KFVEKSAAEL ENSTTRP00000013157/1-1187 SEAPPSAHGA PTPASALPEP KVRVVEYSPP AAPRRPPVYY KFVEKSAEEL 151 200 ENSP00000216267/1-1058 DNEVEYDMDE EDYAWLEIVN EKRKGDCVPA VSQSMFEFLM DRFEKESHCE ENSBTAP00000055298/1-1182 DNEVEYDMDE EDYAWLEIVN EKRRGDCVSA VSQSVFEFLM DRFEKASHCE bmy_22272T0/1-737 DHEVEYDMDE EDYAWLEIVN ERRRGDCVAA VSQSVFEFLM DRFEKASHCE BACU013495/1-1043 DHEVEYDMDE EDYAWLEIVN ERRRGDCVAA VSQSVFEFLM DRFEKASHCE ENSTTRP00000013157/1-1187 DDEVEYDMDE EDYAWLEIVN EKRRGDCVAA VSQGAFEFLM DRFEKASHCE 201 250 ENSP00000216267/1-1058 NQKQGEQQSL IDEDAVCCIC MDGECQNSNV ILFCDMCNLA VHQECYGVPY ENSBTAP00000055298/1-1182 KQKQGEQQCL IDEDAVCCVC MDGECQNSNA ILFCDMCNLA VHQECYGVPY bmy_22272T0/1-737 KQKQGGQQ-- ---------- ---------- ---------- ---------- BACU013495/1-1043 KQKQGGQQCL IDEDAVCCVC MDGECQNSNA ILFCDMCNLA VHQECYGVPY ENSTTRP00000013157/1-1187 KQKQGEQQCL IDEDAVCCVC MDGECQNSNA ILFCDMCNLA VHQECYGVPY 251 300 ENSP00000216267/1-1058 IPEGQWLCRH CLQSRARPAD CVLCPNKGGA FKKTDDDRWG HVVCALWIPE ENSBTAP00000055298/1-1182 IPEGQWLCRH CLQSRARPAD CVLCPNKGGA FKKTDDDRWG HVVCALWIPE bmy_22272T0/1-737 ---------- ---------- ---------- ---------- ---------- BACU013495/1-1043 IPEGQWLCRH CLQSRARPAD CVLCPNKGGA FKKTDDDRWG HVVCALWIPE ENSTTRP00000013157/1-1187 IPEGQWLCRH CLQSRARPAD CVLCPNKGGA FKKTDDDRWG HVVCALWIPE 301 350 ENSP00000216267/1-1058 VGFANTVFIE PIDGVRNIPP ARWKLTCYLC KQKGVGACIQ CHKANCYTAF ENSBTAP00000055298/1-1182 VGFANTVFIE PIDGVRNIPP ARWKLTCYLC KQKGVGACIQ CHKANCYTAF bmy_22272T0/1-737 ---------- ---------- ---------- ---------- ---------- BACU013495/1-1043 VGFANTVFIE PIDGVRNIPP ARWKLTCYLC KQKGVGACIQ CHKANCYTAF ENSTTRP00000013157/1-1187 VGFANTVFIE PIDGVRNIPP ARWKLTCYLC KQKGVGACIQ CHKANCYTAF 351 400 ENSP00000216267/1-1058 HVTCAQKAGL YMKMEPVKEL TGGGTTFSVR KTAYCDVHTP PGCTRRPLNI ENSBTAP00000055298/1-1182 HVTCAQRAGL YMKMEPVREL AGGAATFSVR KTAYCDVHTP PGCTRRPLNI bmy_22272T0/1-737 ---------- ---------- ---------- ---------- ------PLNI BACU013495/1-1043 HVTCAQRAGL YMKMEPVKEL AGGAATFSVR KTAYCDIHTP PGCTRRPLNI ENSTTRP00000013157/1-1187 HVTCAQRAGL YMKMEPVKEL AGGAATFSVR KTAYCDVHTP PGCTRRPLNI 401 450 ENSP00000216267/1-1058 YGDVEMKNGV CRKESSVKTV RSTSKVRKKA KKAKKALAEP CAVLPTVCAP ENSBTAP00000055298/1-1182 YGDVEMKNGV CRKESSVKAL RSTSKVRKKA KKAKKTAREP CTALPPVCAP bmy_22272T0/1-737 YGDVEVKNGV CWKESSAKTV RSTSKVRKKA KKAKKTLREP CAALPPVCAP BACU013495/1-1043 YGDVEVKNGV CRKESSAKTV RSTSKVRKKA KKAKKTLREP CAALPPVCAP ENSTTRP00000013157/1-1187 YGDVEVKNGI CRKESSAKTV RSTSKVRKKA KKAKKTLREP CVALPPVCAP 451 500 ENSP00000216267/1-1058 YIPPQRLNRI ANQVAIQRKK QFVERAHSYW LLKRLSRNGA PLLRRLQSSL ENSBTAP00000055298/1-1182 YIPPQRLNRI ANQVAIQRKK QFVERAHSYW LLKRLSRNGA PLLRRLQSSL bmy_22272T0/1-737 YIPPQRLNRI ANQVAIQRKK QFVARAHSYW LLKRLSRNGA PLLRRLQSSL BACU013495/1-1043 YIPPQRLNRI ANQVAIQRKK QFVERAHSYW LLKRLSRNGA PLLRRLQSSL ENSTTRP00000013157/1-1187 YIPPQRLNRI ANQVAIQRKK QFVERAHSYW LLKRLSRNGA PLLRRLQSSL 501 550 ENSP00000216267/1-1058 QSQRSSQQRE NDEEMKAAKE KLKYWQRLRH DLERARLLIE LLRKREKLKR ENSBTAP00000055298/1-1182 QSHRSSQQRE NDEEIQAAKE KLKYWQRLRH DLERARLLIE LLRKREKLKR bmy_22272T0/1-737 QSHRSSQQRE NDEEIQAAKE KLKYWQRLRH DLERARLLIE LLRKREKLKR BACU013495/1-1043 QSHRSSQQRE NDEEIQAAKE KLKYWQRLRH DLERARLLIE LLRKREKLKR ENSTTRP00000013157/1-1187 QSHRNTQQRE NDEEIQAAKE KLKYWQRLRH DLERARLLIE LLRKREKLKR 551 600 ENSP00000216267/1-1058 EQVKVEQVAM ELRLTPLTVL LRSVLDQLQD KDPARIFAQP VSLKEVPDYL ENSBTAP00000055298/1-1182 EQVKVEQMAL ELRLTPLTVL LRSVLDQLQE KDPARIFAQP VSLKEVPDYL bmy_22272T0/1-737 EQVKVEQMAL ELRLTPLTVL LRSVLDQLQE KDPARIFAQP VSLKEVPDYL BACU013495/1-1043 EQVKVEQMAL ELRLTPLTVL LRSVLDQLQE KDPARIFAQP VSLKEVPDYL ENSTTRP00000013157/1-1187 EQVKLEQVAL ELRLTPLTVL LRSVLDQLQE KDPARIFAQP VSLKEVPDYL 601 650 ENSP00000216267/1-1058 DHIKHPMDFA TMRKRLEAQG YKNLHEFEED FDLIIDNCMK YNARDTVFYR ENSBTAP00000055298/1-1182 DHIKRPMDFA TMRKRLEAQG YRTLRELEED FDLIVDNCMK YNAKDTVFYR bmy_22272T0/1-737 DHIKHPMDFA TMRKRLEAQG YRTLRELEED FDLIVDNCMK YNAKDTVFYR BACU013495/1-1043 DHIKHPMDFA TMRKRLEAQG YRTLGELEED FDLIVDNCMK YKGKDTVFYR ENSTTRP00000013157/1-1187 DHIKHPMDFA TMRKRLEAQG YRTLRELEED FDLIVDNCMK YNAKDTVFYR 651 700 ENSP00000216267/1-1058 AAVRLRDQGG VVLRQARREV DSIGLEEASG MHLPERPAAA PRRPFSWEDV ENSBTAP00000055298/1-1182 AAVRLRDQGG VVLRQARRQA DSVGFDEASG MHLPERPPPA PRRPFSWDEV bmy_22272T0/1-737 AAVRLRDQGG VVLRQARRQA DSVGFEEASG MHLPERPPAA PRRPFSWDDV BACU013495/1-1043 AAVRLRDQGG AVLRQARRQA DGVGFEQASG MHLPERPPAA PRRPFSWDDV ENSTTRP00000013157/1-1187 AAVRLRDQGG VVLRQARRQA DSVGFEQASG MHLPERPPAA PRRPFSWDDV 701 750 ENSP00000216267/1-1058 DRLLDPANRA HLGLEEQLRE LLDMLDLTCA MKSSGSRSKR AKLLKKEIAL ENSBTAP00000055298/1-1182 DRLLNPANRA HMVLEEQLRE LLDMLDLTCA MKSSGSRSKR AKLLKKEIAV bmy_22272T0/1-737 DRLLNPANRA HLVLEEQLRE LLDMLDLTCS MKSSGSRSKR AKLLKKEIAV BACU013495/1-1043 DRLLNPANRA HLVLEEQLRE LLDMLDLTCA MKSSGSRSKR AKLLKKEIAV ENSTTRP00000013157/1-1187 DRLLSPASRA HMVLEEQLRE LLDMLDLTCS MKSSGSRSKR AKLLKKEIAA 751 800 ENSP00000216267/1-1058 LRNKLSQQHS QPLPTGPGLE GFEEDGAALG PEAGEE---- ---------- ENSBTAP00000055298/1-1182 LRSKLSQQHS QPPAVESGTA GSEEDGAPRG QEAAEEGDKS PPKLEPSDAL bmy_22272T0/1-737 LRNKLSQQHS QPPAAESGTA GFEEDGAQLG QETGEEGDKS PPKLEPSDAL BACU013495/1-1043 LRNKLSQQHS QPPAAESGTA GFEEDGAQLG QETGEEGDKS PPKLEPSDAL ENSTTRP00000013157/1-1187 LRSQLSQQHS QPPAAESGTA GFEEDGAQLG QETGEEGDKS PPKLEPSDAL 801 850 ENSP00000216267/1-1058 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055298/1-1182 PLPSNSEPNS EPPTLNPVEL HPEQSKLSKR VTFGNESHST CTQSALLSGH bmy_22272T0/1-737 PLPSNSETNS EPPTLKPVEL NPEQSKLFKR VTFGNESHST CTQSALVIGH BACU013495/1-1043 PLPSNSETNS EPPTLKPVEL NPEQSKLFKR VTFGNESHST CTQSALVIGH ENSTTRP00000013157/1-1187 PLPSNSETNS EPPTLKPVEL NPEQSKLFKR VTFGNESHST CTQSALVIGH 851 900 ENSP00000216267/1-1058 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055298/1-1182 SPEPTLARSG AAPG-----A EPSSDVNRRT SVLFCKSKSV SPPKSAKNTE bmy_22272T0/1-737 PPEPTLASSG DAPAAASAVA EPSSDVNRRT SVLFCKSKS- ---------- BACU013495/1-1043 PPEPTLASSG DAPAAASAVA EPSSDVNRRT SVLFCKSKSV SPPKSAKNTE ENSTTRP00000013157/1-1187 PPEPTLASSG DAPAAASAVA EPSSDVNRRT SVLFCKSKSV SPPKSAKNTE 901 950 ENSP00000216267/1-1058 ---------- ------VLPR LETLLQPRKR SRSTCGDSEV EEESPGKRLD ENSBTAP00000055298/1-1182 TQPTSPQLGT KTFLSVVLPR LETLLQPRKR SRSTCGDSEV EEGSPGKRLD bmy_22272T0/1-737 ---------- -SF------- --------RG WRLFCSQEKG REAPAAT--- BACU013495/1-1043 TQPTSPQLGT KTFLSVVLPR LETLLQPRKR SRSTCGDSEV EEGSPGKRLD ENSTTRP00000013157/1-1187 TQPTSPQLGT KTFLSVVLPR LETLLQPRKR SRSTCGDSEV EEGSPGKRLD 951 1000 ENSP00000216267/1-1058 AGLTNGFGGA RSEQEPGGGL GRKATPRRRC ASESSISSSN SPLCDSSFNA ENSBTAP00000055298/1-1182 TGLTNGFGAA RGEQELGGAP GRTAAPRRRC ASESSISSSS SPLCDASFSA bmy_22272T0/1-737 ---------- ---------- ---------- ---------- ---------- BACU013495/1-1043 T--------- ---------- ---------- ---------- ---------- ENSTTRP00000013157/1-1187 TGLTNGFGAA RGEQELGGAP GRTAAPRRRC ASESSVSSSS SPLCDSSFSA 1001 1050 ENSP00000216267/1-1058 PKCGRGKPAL VRRHTLEDRS ELISCIENGN YAKAARIAAE VGQSSMWIST ENSBTAP00000055298/1-1182 PKCGRGKPAL VRRHTLEGRS ELISCIENGN YAKAARIAAE VGQNSMWIST bmy_22272T0/1-737 ---------- ---------- ---------- ---------- ---------- BACU013495/1-1043 ---------- ---------- ---------- ---------E VGQNSMWIST ENSTTRP00000013157/1-1187 PPCGRGKPAL VRRHTLEDRS ALISCIENGN YAKAARIAAE VGQNSMWIST 1051 1100 ENSP00000216267/1-1058 DAAASVLEPL KVVWAKCSGY PSYPALIIDP KMPRVPGHHN GVTIPAPPLD ENSBTAP00000055298/1-1182 DAAASVLEPL KVVWAKCSGY PSYPALIIDP KMPRVPGHHN GVTIPAPPLD bmy_22272T0/1-737 ---------- ---------- ---------- --PR------ ---------- BACU013495/1-1043 DAAASVLEPL KVVWAKCSGY PSYPALIIDP KMPRVPGHHN GVTIPAPPLD ENSTTRP00000013157/1-1187 DAAASVLEPL KVVWAKCSGY PSYPALIIDP KMPRVPGHHN GVTIPAPPLD 1101 1150 ENSP00000216267/1-1058 VLKIGEHMQT KSDEKLFLVL FFDNKRSWQW LPKSKMVPLG IDETIDKLKM ENSBTAP00000055298/1-1182 VLKVGEHMQT KADEKLFLVL FFDNKRSWQW LPKSKMVPLG IDETIDKLKM bmy_22272T0/1-737 ---------- ---------- -------WRR ---------- ---------- BACU013495/1-1043 VLKIGEHMQT KADEKLFLVL FFDNKRSWQW LPKSKMVPLG IDETIDKLKM ENSTTRP00000013157/1-1187 VLKVGEHMQT KADEKLFLVL FFDNKRSWQW LPKSKMVPLG IDETIDKLKM 1151 1200 ENSP00000216267/1-1058 MEGRNSSIRK AVRIAFDRAM NHLSRVHGEP TSDLSDID ENSBTAP00000055298/1-1182 MEGRNSSIRK AVRVAFDRAM SHLSRVHGEP ASDLSDID bmy_22272T0/1-737 ---------- ---------- -------GPR ESAWTQVN BACU013495/1-1043 MEGRNSSIRK AVRIAFDRAM NHLSRVHGEP ASDLSDID ENSTTRP00000013157/1-1187 MEGRNSSIRK AVRIAFDRAM NHLSRVHGEP ASDLSDID