KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:26:25 2014 Check: 00 .. Name: BACU009200/1-483 Len: 883 Check: 3963 Weight: 1.00 Name: bmy_02725T0/1-751 Len: 883 Check: 2062 Weight: 1.00 Name: ENSP00000293973/1-580 Len: 883 Check: 8213 Weight: 1.00 Name: ENSBTAP00000055307/1-580 Len: 883 Check: 9815 Weight: 1.00 // 1 50 BACU009200/1-483 ---------- ---------- ---------- ---------- ---------- bmy_02725T0/1-751 MSAAERPPPA PAEAPEPHGA LRSLLLATGV AGGSWPRCIL PFGAVVLLAG ENSP00000293973/1-580 ---------- ---------- ---------- -MPGWPWGLL ------LTAG ENSBTAP00000055307/1-580 ---------- ---------- ---------- -MPGWPWGLL ------LTAG 51 100 BACU009200/1-483 ---------- ---------- ---------- ---------- ---------- bmy_02725T0/1-751 AAATAITFSL RGPRLDLAHG SARASGYWPP PSCAGAHGGG GGGGGGGGRG ENSP00000293973/1-580 TLFAALS--- PGP------- --------PA PADPCHDEGG APRGCVPGLV ENSBTAP00000055307/1-580 TLSAALS--- PGP------- --------LA PADPCHDDGG APRGCVPGLV 101 150 BACU009200/1-483 ---------- ---------- ---------- ---------- ---------- bmy_02725T0/1-751 PGAGGGGSRG RPEPTRHALS PASVSGPTEG GSPAYTDTPM WCPPVTAGLG ENSP00000293973/1-580 NAALGREVLA SSTCGRPATR ACDASDPRRA HSPALLTS-- ---------- ENSBTAP00000055307/1-580 NAALGREVLA SSTCGRPATR ACDASDPRRA HPAALLTS-- ---------- 151 200 BACU009200/1-483 ---------- ---------- ---------- ---------- ---------- bmy_02725T0/1-751 LGSASHLELQ ASELLPGGTT SPVCWRSDSL TQVPLNVTLT VPLGKAFELV ENSP00000293973/1-580 ---------- -----PGGTA SPLCWRSESL PRAPLNVTLT VPLGKAFELV ENSBTAP00000055307/1-580 ---------- -----AGGTA SPVCWRSDSL TQVPHNVTLT VPLGKAFELV 201 250 BACU009200/1-483 ---------- ---------- ---------- ---------- ---------- bmy_02725T0/1-751 FVSLRFCSAP PTSVALLKSQ DHGRSWTPLG FFSSRCGLDY GRVPAPADGP ENSP00000293973/1-580 FVSLRFCSAP PASVALLKSQ DHGRSWAPLG FFSSHCDLDY GRLPAPANGP ENSBTAP00000055307/1-580 FVSLRFCSAP PTSLALLKSQ DHGRSWTPLG FFSSHCGLDY GRLPAPADGP 251 300 BACU009200/1-483 ---------- ---------- ---------- ---------- ---------- bmy_02725T0/1-751 AGLGPEALCF PEPQAQPDGG GLLAFSVQDG SPPGLDLDSS PVLQDWVTAT ENSP00000293973/1-580 AGPGPEALCF PAPLAQPDGS GLLAFSMQDS SPPGLDLDSS PVLQDWVTAT ENSBTAP00000055307/1-580 AGPGPEALCF PAPQAQPDGG GLLAFSVQDG SPPGLDLDSS PVLQDWVTAT 301 350 BACU009200/1-483 ---------- MLGDTRDAMA MVPYSYSATE LQVGGRCKCN GHAARCLLDS bmy_02725T0/1-751 DIQVVLTRPT MLGDTRDATA MVPYSYSATE LQVGGRCKCN GHASRCLLDT ENSP00000293973/1-580 DVRVVLTRPS TAGDPRDMEA VVPYSYAATD LQVGGRCKCN GHASRCLLDT ENSBTAP00000055307/1-580 DIQVVLTRPA VLGDTRGAMA TAPYSYSATE LQVGGRCKCN GHASRCLLDP 351 400 BACU009200/1-483 QGHLICDCRH GTEGPDCGRC KPFYCDRPWQ RATAREAHAC LACSCNGHAR bmy_02725T0/1-751 QGHLICDCRH GTEGPDCGRC KPFYCDRPWQ RATAREAHAC LACSCNGHAR ENSP00000293973/1-580 QGHLICDCRH GTEGPDCGRC KPFYCDRPWQ RATARESHAC LACSCNGHAR ENSBTAP00000055307/1-580 QGHLTCDCRH GTEGPDCSRC KPFYCDRPWQ RATAREAHAC LACSCNGHAR 401 450 BACU009200/1-483 RCRFNMELYR LSGRRSGGVC LNCRHNTAGR HCHYCQEGFY RDPGRALSDR bmy_02725T0/1-751 RCRFNMELYR LSGRRSGGVC LNCRHNTAGR HCHYCQEGFY RDPGRALSDR ENSP00000293973/1-580 RCRFNMELYR LSGRRSGGVC LNCRHNTAGR HCHYCREGFY RDPGRALSDR ENSBTAP00000055307/1-580 RCRFNMELYR LSGRRSGGVC LNCRHNTAGR HCHYCREGFY RDPGRALSDR 451 500 BACU009200/1-483 RACR------ ---------- ---------- ----ACDCHP VGAAGKTCNQ bmy_02725T0/1-751 RACRGEPAAS HLHTLTFRFP TSPDGLLTIP LLSSACDCHP VGAAGKTCNQ ENSP00000293973/1-580 RACR------ ---------- ---------- ----ACDCHP VGAAGKTCNQ ENSBTAP00000055307/1-580 RACR------ ---------- ---------- ----ACDCHP VGAAGKTCNQ 501 550 BACU009200/1-483 TTGQCPCKDG VTGLTCNRCA PGFQQSRSPV APCVKTPVPG PTEESSPVEP bmy_02725T0/1-751 TTGQCPCKDG VTGLTCNRCA PGFQQSRSPV APCVNSLGPL QRKAFIPSSP ENSP00000293973/1-580 TTGQCPCKDG VTGLTCNRCA PGFQQSRSPV APCVKTPIPG PTEDSSPVQP ENSBTAP00000055307/1-580 TTGQCPCKDG VTGLTCNRCA PGFQQSRSPV APCVKTPVPG PTEESSPVAP 551 600 BACU009200/1-483 Q--------- ---------- ---------- ---------- ---------- bmy_02725T0/1-751 QRPLSLDPLR RAALWSPRVS GGPRGACPWL EGAMDSRRRG GEGGRRRCRS ENSP00000293973/1-580 Q--------- ---------- ---------- ---------- ---------- ENSBTAP00000055307/1-580 Q--------- ---------- ---------- ---------- ---------- 601 650 BACU009200/1-483 ---------- DCDLHCKPAR GSYRISLKKF CRKDYG-RPP SGLLPPSSSP bmy_02725T0/1-751 VPTSFCALLP DCDLHCKPAR GSYRISLKKF CRKDYAVQVA VRARGEARGS ENSP00000293973/1-580 ---------- DCDSHCKPAR GSYRISLKKF CKKDYAVQVA VGARGEARGA ENSBTAP00000055307/1-580 ---------- DCDLHCKPAR GSYRISLKKF CRKDYAVQVA VGARGEARGS 651 700 BACU009200/1-483 CPLYCPSVYP DPRWTPRPSP GPQVLRCRRP RPVSPLGLSM LPLRRVLFVF bmy_02725T0/1-751 ---------- ---WTRFPVA VLAVFRSGEE RA-------- ---RRGSSAL ENSP00000293973/1-580 ---------- ---WTRFPVA VLAVFRSGEE RA-------- ---RRGSSAL ENSBTAP00000055307/1-580 ---------- ---WTRFPVA VLAVFRSGEE RA-------- ---RRGSSAL 701 750 BACU009200/1-483 LLPPPPHPRG RPVLLCXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02725T0/1-751 WVPARDAACG CPRLL----- ---------- ---------- ---------- ENSP00000293973/1-580 WVPAGDAACG CPRLL----- ---------- ---------- ---------- ENSBTAP00000055307/1-580 WVPARDAACG CPRLL----- ---------- ---------- ---------- 751 800 BACU009200/1-483 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02725T0/1-751 ---------- ---------- ---------- ---------- ---------- ENSP00000293973/1-580 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055307/1-580 ---------- ---------- ---------- ---------- ---------- 801 850 BACU009200/1-483 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_02725T0/1-751 ---------- ---------- ---PDRRYLL LGGGPGAAAG GPEGRGPGLS ENSP00000293973/1-580 ---------- ---------- ---PGRRYLL LGGGPGAAAG GAGGRGPGLI ENSBTAP00000055307/1-580 ---------- ---------- ---PGRRYLL LGGGPGAAVG GPGGRGPGLS 851 900 BACU009200/1-483 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX GAA bmy_02725T0/1-751 AARGSLVLPW RDAWTRRLRR LQRRERRGRC GAA ENSP00000293973/1-580 AARGSLVLPW RDAWTRRLRR LQRRERRGRC SAA ENSBTAP00000055307/1-580 AARGSLVLPW RDAWTRRLRR LQRRERRGRC GAA