KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:31 2014 Check: 00 .. Name: ENSTTRP00000013211/1-829 Len: 896 Check: 7257 Weight: 1.00 Name: ENSP00000368759/1-834 Len: 896 Check: 9241 Weight: 1.00 Name: ENSBTAP00000055362/1-862 Len: 896 Check: 3557 Weight: 1.00 Name: bmy_13354T0/1-710 Len: 896 Check: 5458 Weight: 1.00 Name: BACU005148/1-828 Len: 896 Check: 2802 Weight: 1.00 // 1 50 ENSTTRP00000013211/1-829 MKYKNLMARA LYDNVPECAE ELAFRKGDIL TVIEQNTGGL EGWWLCSLHG ENSP00000368759/1-834 MKYKNLMARA LYDNVPECAE ELAFRKGDIL TVIEQNTGGL EGWWLCSLHG ENSBTAP00000055362/1-862 ----NLMARA LYDNVPECAE ELAFRKGDIL TVIEQNTGGL EGWWLCSLHG bmy_13354T0/1-710 ---------- -----MQCV- DMKMRA---- ---------- -----C---- BACU005148/1-828 ------MARA LYDNVPECAE ELAFRKGDIL TVIEQNTGGL EGWWLCSLHG 51 100 ENSTTRP00000013211/1-829 RQGIVPGNRV KLLIGPVQET SSSQDPPTSG LMHQPFGQQK LYQMPNLQGT ENSP00000368759/1-834 RQGIVPGNRV KLLIGPMQET ASSHEQPASG LMQQTFGQQK LYQVPNPQAA ENSBTAP00000055362/1-862 RQGIVPGNRV KLLIGPVQET SSNQDLPTSG LGAPPFGQQK LYQIPNPQGA bmy_13354T0/1-710 --------RV RFV------- ---------- ---------S LTLVPDARAV BACU005148/1-828 RQGIVPGNRV KLLIGPVQET SSSQDLPTSG LMHQPFGQQK LYQMPNPQGA 101 150 ENSTTRP00000013211/1-829 PRDTIYQVPP SYQNQGIYQV PTGHGTQEQD VYQVPPSVQR GIAGANGPHL ENSP00000368759/1-834 PRDTIYQVPP SYQNQGIYQV PTGHGTQEQE VYQVPPSVQR SIGGTSGPHV ENSBTAP00000055362/1-862 PRDTIYQVPP SYQNQGIYQV PTGHGTQEQD VYQVPPSGQR GAGGANGPHL bmy_13354T0/1-710 ---------- ---------- ---------- ---------- ---------- BACU005148/1-828 PRDTIYQVPP SYQNQGIYQV PTGHGAQEQD VYQVPPSVQR GIAGANGPHL 151 200 ENSTTRP00000013211/1-829 ---------- ---------- ---------- ---------- ---------- ENSP00000368759/1-834 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055362/1-862 IFNSPNLKLC HKPHGPGPHP ERERVTPSMG FKTKRHPHPI RKEERTRNWH bmy_13354T0/1-710 ---------- ---------- ---------- ---------- ---------- BACU005148/1-828 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000013211/1-829 ----SKKVIT PMRTGHGYVY EYPSRYQKDV YDVPPSQTAH GVYDIPPSSV ENSP00000368759/1-834 ----GKKVIT PVRTGHGYVY EYPSRYQKDV YDIPPSHTTQ GVYDIPPSSA ENSBTAP00000055362/1-862 QSDPSSGVIT PVRTSHGYVY EYPTRYQKDV YDVPPFQTAH G--------- bmy_13354T0/1-710 -----MSVIT PMRTGHGYVY EYPSRYQKDV YDVPPSQTAH GVYDIPPSSV BACU005148/1-828 ----SKKVIT PMRTGHGYVY EYPSRYQKDV YDVPPSQTAH GVYDIPPSSV 251 300 ENSTTRP00000013211/1-829 KGPVFSVPVG EIKPQGVYDI PPTKG----- --GYAIPPPA CRDEAGLREK ENSP00000368759/1-834 KGPVFSVPVG EIKPQGVYDI PPTKG----- --VYAIPPSA CRDEAGLREK ENSBTAP00000055362/1-862 ---------- ---PQGVYDI PPSKGVSLES VWGYSTPPSG YRDEAGLREK bmy_13354T0/1-710 KGPVFSVPVG EIKPQGVYDI PPTKG----- --GYAIPPPA CRDEAGLMEK BACU005148/1-828 KGPVFSVPVG EIKPQGVYDI PPTKG----- --GYAIPPPA CRDEAGLREK 301 350 ENSTTRP00000013211/1-829 EYDFPPPMRH AGRPDGRPEG VYDIPPAGTK PLGKDLHAKY NGDA--AAEL ENSP00000368759/1-834 DYDFPPPMRQ AGRPDLRPEG VYDIPPTCTK PAGKDLHVKY NCDIPGAAEP ENSBTAP00000055362/1-862 EYDFPPPMRQ AG----RPEG VYDIPPTGAK PLGTDLHPKY NGDAPGAAEL bmy_13354T0/1-710 EYDFPPPMRH AGRPDGRPEG VYDIPPAGTK PLGKDLHAKC NGDAAGAAEL BACU005148/1-828 EYDFPSPVRH AGRPDGRPEG VYDIPPAGTK PLGKDLHAKC NGDAAGAAEL 351 400 ENSTTRP00000013211/1-829 APRRHQSISL SHPVPQLRQP GGSQ-NDAYD VPRGVQFLAL PAEAGGKANL ENSP00000368759/1-834 VARRHQSLSP NHPPPQLGQS VGSQ-NDAYD VPRGVQFLEP PAETSEKANP ENSBTAP00000055362/1-862 APRRHGGTSL TQPAPQLGPP VGSQNNDAYD IPRGIQFLEA PAETSEKASP bmy_13354T0/1-710 APRRHQSISL SHPAPQLGQP GGSQ-NDAYD VPRGVQFLAP PAETSEKANL BACU005148/1-828 APRRHQSVSL SHPAPQLGQP GGSQ-NDAYD VPRGVQLLAP PAETSEKANL 401 450 ENSTTRP00000013211/1-829 EERDGVYDVP LRNPPDAKGS QDVVDGINRL SFSSTGST-- -MSTSSTTSK ENSP00000368759/1-834 QERDGVYDVP LHNPPDAKGS RDLVDGINRL SFSSTGSTRS NMSTSSTSSK ENSBTAP00000055362/1-862 EERDGVYDVP LHQPPEAKGP VDVVDGINRL SFSSTGSTRS TMSTSSTTSK bmy_13354T0/1-710 EERDGVYDVP LRCPPDAKGS PDVVDGINRL SFSSTGSSRS TMSTSSTASK BACU005148/1-828 EERDGVYDVP LHSPPDAKGP PDVVDGINRL SFSSTGSTRS TMSTSSTTSK 451 500 ENSTTRP00000013211/1-829 ESSLSASPSQ DRRLFLDPDT AIERLHRLQQ ALEMGVSGLM ALVTTDWRGY ENSP00000368759/1-834 ESSLSASPAQ DKRLFLDPDT AIERLQRLQQ ALEMGVSSLM ALVTTDWRCY ENSBTAP00000055362/1-862 ESSLSTSPAQ DRRLFLDPDA ALERLLRLQQ ALDGAVSSLM ALVTTDWRSY bmy_13354T0/1-710 DSALSASPAQ GKRLFLDPDT AIERLHRLQQ ALETGVSGLR ALVTTDWRGY BACU005148/1-828 DSALSASPAQ DKRLFLDPDT AIERLHRLQQ ALETGVSGLR ALVTTDWRGY 501 550 ENSTTRP00000013211/1-829 GYMERHVNEV RAAVDRVELA LRDYLHFAKG ATANASCLPE PPLHNKMKRE ENSP00000368759/1-834 GYMERHINEI RTAVDKVELF LKEYLHFVKG AVANAACLPE LILHNKMKRE ENSBTAP00000055362/1-862 GYMERHVNGV RAAVDRVELA LRDYLHFAQG AAANAACLPE LVLHHKVKRE bmy_13354T0/1-710 GYMERHVNEV RAAVDSVELA LRDYLHFARG AAANASRLPE PLLHHKVRRE BACU005148/1-828 GYMERHVNEV RAAVDSVELA LRDYVHFARG AAANASRLPE PLLQHKVRRE 551 600 ENSTTRP00000013211/1-829 LQRLEDSHQI LSQTSHDLNE CSWSLNVLAV NKPQNKWDDL DRFVMVAKTV ENSP00000368759/1-834 LQRVEDSHQI LSQTSHDLNE CSWSLNILAI NKPQNKCDDL DRFVMVAKTV ENSBTAP00000055362/1-862 LQRLEDSHQI LGQTSHELSE CGWSLNVLAV HKPHNKWDSL DRFVMVAKTV bmy_13354T0/1-710 LQRLEDSHQI LSQTSHDLNE CSWSLNVLAV NKPQNKWDDL DRFVMVAKTV BACU005148/1-828 LQRLEDSLQL LSQTSHDLNE CSWSLNVLAV NKPQNKWDDL DRFVMVAKTV 601 650 ENSTTRP00000013211/1-829 PDDAKQLTTT INTNAEALFK PGPGSSHGKS GPESITNSAE CPHASSQVQR ENSP00000368759/1-834 PDDAKQLTTT INTNAEALFR PGPGSLHLKN GPESIMNSTE YPHGGSQGQL ENSBTAP00000055362/1-862 PDDAKQLTTT ISTNAEALFR PGPG----KG GPESITNSTE YPPTGSPGQL bmy_13354T0/1-710 PDDAKQLTTT INTNAEALFK PGPGSSHGKS GPESITNSAE CPHAGSQVQL BACU005148/1-828 PDDAKQLTTT INTNAEALFK PGPGSSHGKG GPESTTNSAE CPHAGSQVQL 651 700 ENSTTRP00000013211/1-829 LHPGDHKAPA LNKPLPPSLG KDQPPDCSSS DGSERSWMDD YDYVHLQGKE ENSP00000368759/1-834 LHPGDHKAQA HNKALPPGLS KEQAPDCSSS DGSERSWMDD YDYVHLQGKE ENSBTAP00000055362/1-862 LPPGDHKAPA LNKPLPPSLG KEQPPDCSSS DGSERSWMDD YDYVHLQGKE bmy_13354T0/1-710 LHPGDHKAPA LNKPLAPSLG KDQPPDCSSS DGSERSWMDD YDYVHLQGKE BACU005148/1-828 LHPGDHKAPA LNKPLPPSLG KDQPPDCSSS DGSERSWMDD YDYVHLQGKE 701 750 ENSTTRP00000013211/1-829 EFERQQKELL EKENIIKQNK MQLEHHQXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368759/1-834 EFERQQKELL EKENIMKQNK MQLEHHQLSQ FQLLEQEITK PVENDISKWK ENSBTAP00000055362/1-862 EFERQQKELL EKENIIKQNK MQLEHHQLSQ FQLLEQEITK PVENDISKWK bmy_13354T0/1-710 EFERQQKELL EKENIIKQNK MQLEHHQLSQ FQLLEQEITK PVENDISKWK BACU005148/1-828 EFERQQKELL EKENIIKQNK MQLEHHQLSQ FQLLEQEITK PVENDISKWK 751 800 ENSTTRP00000013211/1-829 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368759/1-834 PSQSLPTTNS GVSAQDRQLL CFYYDQCETH FISLLNAIDA LFSCVSSAQP ENSBTAP00000055362/1-862 PSQSLPTTSS GVSAQDRQLL CFYYDQCETH YISLLNAIDA LFSCLSSAQP bmy_13354T0/1-710 PSQSLPSTSS GVGAQDRQLL CFYYDQCETH YISLLNAIDA LFSCLSSAQP BACU005148/1-828 PSQSLPSTSS GVGAQDRQLL CFYYDQCETH YISLLNAIDA LFSCLSSAQP 801 850 ENSTTRP00000013211/1-829 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368759/1-834 PRIFVAHSKF VILSAHKLVF IGDTLTRQVT AQDIRNKVMN SSNQLCEQLK ENSBTAP00000055362/1-862 PRIFVAHSKF VILSAHKLVF IGDTLTRQVA AQDVRNKVMN SSNQLCEQLK bmy_13354T0/1-710 PRIFVAHSKF VILSAHKLVF IGDTLTRQVA AQDVRNKVMN SSNQLCEQLK BACU005148/1-828 PRIFVAHSKF VILSAHKLVF IGDTLTRQVA AQDVRNKVMN SSNQLCEQLK 851 900 ENSTTRP00000013211/1-829 TIVLATKTAA LHYPSTSALQ EMVHQVTDLS RNAQLFKRSL LEMATF ENSP00000368759/1-834 TIVMATKMAA LHYPSTTALQ EMVHQVTDLS RNAQLFKRSL LEMATF ENSBTAP00000055362/1-862 TIVLATKTAA LHYPSTPALQ EMVHQVTDLS RNAQLFKRSL LEMATF bmy_13354T0/1-710 TIVLATKTAA LHYPSTSALQ EMVHQVTDLS RNAQLFKRSL LEMATF BACU005148/1-828 TIVLATKTAA LHYPSTSALQ EMVHQVTDLS RNAQLFKRSL LEMATF