KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:32 2014 Check: 00 .. Name: BACU005066/1-1260 Len: 1260 Check: 5242 Weight: 1.00 Name: ENSBTAP00000055370/1-298 Len: 1260 Check: 5485 Weight: 1.00 Name: ENSP00000370808/1-298 Len: 1260 Check: 5641 Weight: 1.00 Name: ENSTTRP00000014594/1-298 Len: 1260 Check: 4667 Weight: 1.00 Name: bmy_17979T0/1-193 Len: 1260 Check: 4395 Weight: 1.00 // 1 50 BACU005066/1-1260 MNLTRPDNAT LLMLRDPAIA VVLPVVYSLV ALISIPGNLF SLWVLCRHIG ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 51 100 BACU005066/1-1260 PKTPSVIFMI NLSVTDLMLA CVLPFQIYYH CNGNHWVFGE LLCNVVTVAF ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 101 150 BACU005066/1-1260 YANMYSSILT MTCISVDRFL GCRRYAAAAC AGTWLLLLAA LSPLARTDLT ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 151 200 BACU005066/1-1260 YAVEALGIVT CFDVLKSTML PSVATWAAFL FTLFVVLFLI PFVVTVVCYT ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 201 250 BACU005066/1-1260 TTILTLLRSA DCHGEARRRR AVGLAAVVLL AFVTCFAPNN FVLLAHVVSR ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 251 300 BACU005066/1-1260 LFFGRSYYHV YKLTLCLSCL NNCLDPFVYY FASRAPNSTE VQEVRQGLSN ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 301 350 BACU005066/1-1260 CWEFPSRTSG DRQPVREESS GLVLEIRGEL TPSDSDPSLN GFRVCLCNTF ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 351 400 BACU005066/1-1260 SDVFIQIKLS DASIDRGEPG LRFEVVPSRF KEKLHKASFA TPYAYAVETA ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 401 450 BACU005066/1-1260 KQKALEKDLR APDVVIGADT IVAVGATILE KPVDKQDAYR MLSRLNGKEH ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 451 500 BACU005066/1-1260 SVFTGVAIVH CCSKDGRLDT EVSEFYEETT VTFSELSEEL LWEYINSGEP ENSBTAP00000055370/1-298 ---------- ---------- -----MTEQA ISFA------ ---------- ENSP00000370808/1-298 ---------- ---------- -----MTEQA ISFA------ ---------- ENSTTRP00000014594/1-298 ---------- ---------- -----MTEQA ISFA------ ---------- bmy_17979T0/1-193 ---------- ---------- -----MTEQA ISFA------ ---------- 501 550 BACU005066/1-1260 ILCSSLAGCA PQARRGGARR QLVADGLATG LTLPRGPASP CVFLRGAGHR ENSBTAP00000055370/1-298 ---------- ---------K DFLAGGIAAA I--------- ---------- ENSP00000370808/1-298 ---------- ---------K DFLAGGIAAA I--------- ---------- ENSTTRP00000014594/1-298 ---------- ---------K DFLAGGIAAA I--------- ---------- bmy_17979T0/1-193 ---------- ---------K DFLAGGIAAA I--------- ---------- 551 600 BACU005066/1-1260 QPRGGERRRP GLLRPRVRAR VLLVKARLRP VHGKGQGGES PWGIGLVEAV ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 601 650 BACU005066/1-1260 TGLFTVKAGE ESLPGVLVSW KQSQGLRRVK HDSIPAVDTF ENLSDTEGGG ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 651 700 BACU005066/1-1260 SDPGPSAEGG RGGEEADGDR SQAPGALDAA LNGAESRPPF PTGLLELMDG ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 701 750 BACU005066/1-1260 FKASKVLFTA CKLKLFDVLK DQGPLKAVDV ARKLDACAGG TEQLLDVCVA ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 751 800 BACU005066/1-1260 LGLLEKTHRG YSNTAVTTLH LVSDAEHSLL GLAEYNDAHV WGVFTRLGLA ENSBTAP00000055370/1-298 ---------- -SKTAVAPI- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- -SKTAVAPI- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- -SKTAVAPI- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- -SKTAVAPI- ---------- ---------- ---------- 801 850 BACU005066/1-1260 VREGAGQARG ALGVTEEEEH LSQSREMTLQ FMRAMHSLSK LTAHHVATAF ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 851 900 BACU005066/1-1260 DLSRFTSACD LGGCTGILAR ELAREYPHLQ VTVFDLPEVI ELSGGFQRGG ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 901 950 BACU005066/1-1260 RQTERIRFVP GDFFKDNLPE ADLYVLSRIL QDWPDDRLHK LLSRISSGCK ENSBTAP00000055370/1-298 ---ERVKL-- ---------- ---------- ---------- ---------- ENSP00000370808/1-298 ---ERVKL-- ---------- ---------- ---------- ---------- ENSTTRP00000014594/1-298 ---ERVKL-- ---------- ---------- ---------- ---------- bmy_17979T0/1-193 ---ERVKL-- ---------- ---------- ---------- ---------- 951 1000 BACU005066/1-1260 PGGGLLVAEA AAEEEEGASR SPRLRTLSAG QPRSPDEHRR LLQRHGFRDV ENSBTAP00000055370/1-298 ---------- ---------- ---------- ---------- LLQ------V ENSP00000370808/1-298 ---------- ---------- ---------- ---------- LLQ------V ENSTTRP00000014594/1-298 ---------- ---------- ---------- ---------- LLQ------V bmy_17979T0/1-193 ---------- ---------- ---------- ---------- LLQ------V 1001 1050 BACU005066/1-1260 QHASKQIAAD KQYKGIVDCI VRIPKEQGVL SFWRGNLANV IRYFPTQALN ENSBTAP00000055370/1-298 QHASKQIAAD KQYKGIVDCI VRIPKEQGVL SFWRGNLANV IRYFPTQALN ENSP00000370808/1-298 QHASKQIAAD KQYKGIVDCI VRIPKEQGVL SFWRGNLANV IRYFPTQALN ENSTTRP00000014594/1-298 QHASKQIAAD KQYKGIVDCI VRIPKEQGVL SFWRGNLANV IRYFPTQALN bmy_17979T0/1-193 QHASKQIAAD KQYKGIVDCI VRIPKEQGVL SFWRGNLANV IRYFPTQALN 1051 1100 BACU005066/1-1260 FAFKDKYKQI FLGGVDKHTQ FWKYFAGNLA SGGAAGATSL CFVYPLDFAR ENSBTAP00000055370/1-298 FAFKDKYKQI FLGGVDKRTQ FWRYFAGNLA SGGAAGATSL CFVYPLDFAR ENSP00000370808/1-298 FAFKDKYKQI FLGGVDKHTQ FWRYFAGNLA SGGAAGATSL CFVYPLDFAR ENSTTRP00000014594/1-298 FAFKDKYKQI FLGGVDKHTQ FWKYFAGNLA SGGAAGATSL CFVYPLDFAR bmy_17979T0/1-193 FAFKDKYKQI FLGGVDKHTQ FWKYFAGNLA SGGAAGATSL CFVYPLDFAR 1101 1150 BACU005066/1-1260 TRLAADVGKS GTEREFKGLG DCLVKITKSD GIRGLYQGFN VSVQGIIIYR ENSBTAP00000055370/1-298 TRLAADVGKS GSEREFRGLG DCLVKITKSD GIRGLYQGFN VSVQGIIIYR ENSP00000370808/1-298 TRLAADVGKS GTEREFRGLG DCLVKITKSD GIRGLYQGFS VSVQGIIIYR ENSTTRP00000014594/1-298 TRLAADVGKS GTEREFKGLG DCLVKITKSD GIRGLYQGFS VSVQGIIIYR bmy_17979T0/1-193 TRLAADVGKS GMEREFKGLG DCLVKITKSD GIRGLYQGFN VSVQGIIIYR 1151 1200 BACU005066/1-1260 AAYFGVYDTA KGMLPDPKNT HIVVSWMIAQ TVTAAAGVVS YPFDTVRRRM ENSBTAP00000055370/1-298 AAYFGIYDTA KGMLPDPKNT HIVVSWMIAQ TVTAVAGVVS YPFDTVRRRM ENSP00000370808/1-298 AAYFGVYDTA KGMLPDPKNT HIVVSWMIAQ TVTAVAGVVS YPFDTVRRRM ENSTTRP00000014594/1-298 AAYFGVYDTA KGMLPDPKNT HIVVSWMIAQ TVTAVAGVVS YPFDTVRRRM bmy_17979T0/1-193 AAYFG----- ---------- ---------- ---------- ---------- 1201 1250 BACU005066/1-1260 MMQSGRKGAD IMYRGTLDCW RKIFKDEGGR AFFKGAWSNV LRGMGGAFVL ENSBTAP00000055370/1-298 MMQSGRKGAD IMYKGTVDCW RKILKDEGGK AFFKGAWSNV LRGMGGAFVL ENSP00000370808/1-298 MMQSGRKGAD IMYTGTVDCW RKIFRDEGGK AFFKGAWSNV LRGMGGAFVL ENSTTRP00000014594/1-298 MMQSGRKGAD IMYRGTLDCW RKIFKDEGGR AFFKGAWSNV LRGMGGAFVL bmy_17979T0/1-193 ---------- ---------- ---------- ---------- ---------- 1251 1300 BACU005066/1-1260 VLYDELKKVI ENSBTAP00000055370/1-298 VLYDELKKVI ENSP00000370808/1-298 VLYDELKKVI ENSTTRP00000014594/1-298 VLYDELKKVI bmy_17979T0/1-193 ----------