KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:32 2014 Check: 00 .. Name: ENSP00000360635/1-492 Len: 637 Check: 2692 Weight: 1.00 Name: ENSBTAP00000055373/1-335 Len: 637 Check: 6411 Weight: 1.00 Name: ENSTTRP00000001968/1-471 Len: 637 Check: 8524 Weight: 1.00 Name: BACU009831/1-621 Len: 637 Check: 4371 Weight: 1.00 Name: bmy_14839T0/1-526 Len: 637 Check: 5318 Weight: 1.00 // 1 50 ENSP00000360635/1-492 ---------- ---------- --------MG S--------- ---------- ENSBTAP00000055373/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001968/1-471 ---------- ---------- --------MS SAPQAA---- ---------- BACU009831/1-621 MELARALMDT CYQMNRQMET GLSPEIVHFN LHPQKSRKDV QVKAADRHNL bmy_14839T0/1-526 ---------- ---------- --------MS SPPQPA---- ---------- 51 100 ENSP00000360635/1-492 ---------- ---------- -APWAPVLLL AL-------- ---------- ENSBTAP00000055373/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001968/1-471 ---------- ---------- -PTWALALVL AL-------- ---------- BACU009831/1-621 LRPETVESLF YLYRLTGDRK YQDWGWEILR SFNTYTRVPS GGYSSISNVQ bmy_14839T0/1-526 ---------- ---------- -LPWALALLL AL-------- ---------- 101 150 ENSP00000360635/1-492 ---------G LRGLQAG--- ---------- --------AR RAPDPGFQER ENSBTAP00000055373/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001968/1-471 ---------Q LRSLEAG--- ---------- --------AH RATDPDFQEA BACU009831/1-621 DPRNPQPRDK MESFFLGETL KYLYLLFSDA PDLLSLGTPH RATDPDFQEA bmy_14839T0/1-526 ---------Q LRSLEAG--- ---------- --------AH RATDPDFQEA 151 200 ENSP00000360635/1-492 FFQQRLDHFN FERFGNKTFP QRFLVSDRFW VRGEGPIFFY TGNEGDVWAF ENSBTAP00000055373/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001968/1-471 YFEQLLDHFN FERFGNKTFR QRFLLSEKFW KRGEGPIFFY TGNEGDVWSF BACU009831/1-621 YFEQLLDHFN FERFGNKTFR QRFLLSEKFW KRGEGPIFFY TGNEGDVWSF bmy_14839T0/1-526 YFEQLLDHFN FERFGNKTFR QRFLLSEKFW KKGEGPIFFY TGNEGDVWSF 201 250 ENSP00000360635/1-492 ANNSAFVAEL AAERGALLVF AEHRYYGKSL PFGAQSTQRG HTELLTVEQA ENSBTAP00000055373/1-335 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001968/1-471 ANNSGFILEL AAQQGALVVF AEHRYYGKSL PFGERSTCRG YTELLTVEQA BACU009831/1-621 ANNSGFILEL AAQQGALVVF AEHRYYGKSL PFGERSRCRG YTELLTVEQA bmy_14839T0/1-526 ANNSGFILEL AAQHGALVVF AEHRYYGKSL PFGERSRCRG YTELLTVEQA 251 300 ENSP00000360635/1-492 LADFAELLRA LRRDLGAQDA PAIAFGGSYG GMLSAYLRMK YPHLVAGALA ENSBTAP00000055373/1-335 ---------- ----LEAPDA PAIAFGGSYG GMLSAYLRIK YPHLVAGALA ENSTTRP00000001968/1-471 LADYAGLLRA LRQELGAQDA PAIAFGGSYG GMLSAYMRIK YPHLVAGALA BACU009831/1-621 LADYAGLLRA LRQELGARDA PAIAFGGSYG GMLSAYMRIK YPHLVAGALA bmy_14839T0/1-526 LADYAGLLRA LRQELGAWDA PAIAFGGSYG GMLSAYMRIK YPHLVAGALA 301 350 ENSP00000360635/1-492 ASAPVLAVAG LGDSNQFFRD VTADFEGQSP KCTQGVREAF RQIKDLFLQG ENSBTAP00000055373/1-335 ASAPVVSAAG LGDPYQFFQD VSADFQGQSP ECARAVQDAF RQIRDLFQQG ENSTTRP00000001968/1-471 ASAPVVSVAG LGDPYQFFRD VSADFEGQSP KCAQAVRDAF RPINDLFLQG BACU009831/1-621 ASAPVVAVAG LGDPYQFFRD VSADFEGQSP ECAQAVRDAF RQIKDLFLQG bmy_14839T0/1-526 ASAPVVAVAG LGDPYQFFRD VSADFEGQSP ECAQAVRDAF RQIKDLFLQG 351 400 ENSP00000360635/1-492 AYDTVRWEFG TCQPLSDEKD LTQLFMFARN AFTVLAMMDY PYPTDFLGPL ENSBTAP00000055373/1-335 APHVVSQEFG TCQPLSGPKD LTQLFGFARN AFTVLAMMDY PYATDFVGHL ENSTTRP00000001968/1-471 AYDTVSQEFG TCWPLSGPGD LTQLFGFARN AFTLLAMMDY PYPTDFVGHL BACU009831/1-621 AYDAVSQEFG TCWPLSGPGD LTQLFGFARN AFTLLAMMDY PYPVDFLRHL bmy_14839T0/1-526 AYDAVSQEFG TCWPLSGPGD LTQLFGFARN AFTLLAMMDY PYPVDFVGHL 401 450 ENSP00000360635/1-492 PANPVK---- ---------- VGCDRLLSEA QRITGLRALA GLVYNASGSE ENSBTAP00000055373/1-335 PAHPVQ---- ---------- VGCSRLLSES SRIAGLRALA GLVYNSSGIE ENSTTRP00000001968/1-471 PANPVK---- ---------- VGCDRLLSES QRIKGLRSLA ---------D BACU009831/1-621 PANP------ ---------- VGCDRLLSES QRIKGLRSLA GLVYNSSGTE bmy_14839T0/1-526 PANPVKARHP PLAGGNPGRA VGCDRLLSES QRIKGLRSLA GLVYNSSGTE 451 500 ENSP00000360635/1-492 HCYDIYRLYH SCADPTGCGT GPDARAWDYQ ACTEINLTFA SNNVTDMFPD ENSBTAP00000055373/1-335 PCYDIYLQYQ ACADPTGCGL GSDAKAWDYQ ACTEISLTFS SNNVSDLFPE ENSTTRP00000001968/1-471 TCWPVRARXX XXX------- ---------- -----XLTFS SNNVSDIFPD BACU009831/1-621 PCYDIYLQYQ VCADPTGCGL GPDAKAWDYQ ACTEINLTFS SNNVSDIFPD bmy_14839T0/1-526 PCYDIYLQYQ VCADPTGCGL GPDAKAWDYQ ACTEINLTFS SNNVSDIFPD 501 550 ENSP00000360635/1-492 LPFTDELRQR YCLDTWGVWP RPDWLLTSFW GGDLRAASNI IFSNGNLDPW ENSBTAP00000055373/1-335 LPFTEAQRQQ YCLDTWGVWP RQDWLQTSFG GGDLTAASNI IFSNGDLDPW ENSTTRP00000001968/1-471 LPFTEALRQQ YCLDTWGVWP RQDWLQTSFG GGDLTAASNI IFSNGDLDPW BACU009831/1-621 LPFTEALRQQ YCLDVWGVWP RQDWLQTSFG GGDLTAASNI IFSNGDLDPW bmy_14839T0/1-526 LPFTEALRQQ YCLDTWGVWP RQDWLQTSFG GGDLTAASNI IFSNGDLDPW 551 600 ENSP00000360635/1-492 AGGGIRRNLS ASVIAVTIQG GAHHLDLRAS HPEDPASVVE ARKLEATIIG ENSBTAP00000055373/1-335 ARGGIQSNLS ASVLAITIHG GAHHLDLRGS HPDDPASVVE ARRLEAALIG ENSTTRP00000001968/1-471 AGGGIQSNLS MSVLAVTIHG GAHHLDLRAS HPEDPASVVE ARRLEATLIG BACU009831/1-621 AGGGIQSNLS TSVLAITIHG AAHHLDLRAS HPEDPASVVE ARRLEATLIG bmy_14839T0/1-526 AGGGIQSNLS MSVLAITIHG AAHHLDLRAS HPEDPASVVE ARRLEATLIG 601 650 ENSP00000360635/1-492 EWVKAARREQ QPAL--RGGP RLSL------ ------- ENSBTAP00000055373/1-335 KWVEAAR--- --------ST GLQG------ ------- ENSTTRP00000001968/1-471 KWVEAARHEQ RLRLAQHRGS RLRGAPP--- ------- BACU009831/1-621 KWVEAARHER RLRLPQHGGP EAEGCSPGRT REDLLGA bmy_14839T0/1-526 KWVEAARHEQ RLRLAHHRGS EAEGCSPSRT RGDLLGA