KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:26:33 2014 Check: 00 .. Name: ENSBTAP00000055377/1-667 Len: 676 Check: 1530 Weight: 1.00 Name: ENSTTRP00000007115/1-639 Len: 676 Check: 2687 Weight: 1.00 Name: bmy_14738T0/1-612 Len: 676 Check: 5821 Weight: 1.00 Name: BACU012808/1-655 Len: 676 Check: 9739 Weight: 1.00 // 1 50 ENSBTAP00000055377/1-667 TANMHSQRSF GKPEKEQGHE EEEEEEEEQE VNVEEEEEEE EEEAVEEEEE ENSTTRP00000007115/1-639 AAKMHSNHSF RKPEEE---- ---------- ---------- -----DEEDE bmy_14738T0/1-612 -MHSHSHHSF RKPEEERGQQ EEGDE----- --MGMEEEEE EEVVAEEEEE BACU012808/1-655 ---MHSHHSF RKPEEERGQQ EEGDE----- --MGMEEEEE -----EEEEE 51 100 ENSBTAP00000055377/1-667 EEEEEDQQAV AELEKELEAF GRFSEEYFSK FWDFGDASEE GWP--RPRLA ENSTTRP00000007115/1-639 EDA-----AA AAAAAD--QD GGFSEEYLWK LLAFGDGNEE EWKAFRPRSA bmy_14738T0/1-612 EDE-----AA ADREKELALH GRFSEEYLWK LLAFGDGNEE EWKALRPRLA BACU012808/1-655 EDE-----AA ADREKELALH GRFSEEYLWK LLAFGDGNEE EWKALRPRLA 101 150 ENSBTAP00000055377/1-667 SVVSPSLSPT LTL-RTPSLS WWSQTSVPSD SAPSRISSQK SFPKIFQTFR ENSTTRP00000007115/1-639 SVVSPSLSPT PTLSRTPSLK -WSQTPVASE SAPSSTSSPK SFPKILQTFK bmy_14738T0/1-612 SVLSPSLSPT PTLSRTPSLK -WSRTPAASE SAPSSTSSQK ---------- BACU012808/1-655 SVVSPSLSPT PTLSRTPSLK -WSRTPAASE SAPSSTSSQK SFPKIFQTFK 151 200 ENSBTAP00000055377/1-667 KDMSEMNFDR AIYHSLHPKV PVSIQTEESW LQELADMEKP KKKVPSVKKE ENSTTRP00000007115/1-639 KDMSETNLDR AVYHNLYPRI STSVQTEESW LQELSGMQQL KKEVPSVEKE bmy_14738T0/1-612 ---------- ---------- ---------- ---------- KKEVPSVKKE BACU012808/1-655 KDMSETNLDR AVYHNLYPRI PTSVQTEESW LQELSGMEQP KKEVPSVKKE 201 250 ENSBTAP00000055377/1-667 DEPENPASKL RAKWIINPEE PKLSILCELE FKEDFITLFE PSLRTLPSIG ENSTTRP00000007115/1-639 DESENLASKL RAKWVINPEE PKLNILCELE FKEDFITLFE PSLRTLPSIG bmy_14738T0/1-612 DEPENLASKL RAKWIINPEE PKLNILCELE FKEDFITLFE PSLRTLPSIG BACU012808/1-655 DEPENLASKL RAKWIINPEE PKLNILCELE FKEDFITLFE SSLRTLPSIG 251 300 ENSBTAP00000055377/1-667 PPSILTFKQE SSNLGIKFKE EEEEESPKCE FCGSDLRTFL SNVDVSSDYS ENSTTRP00000007115/1-639 PPSIFTFKQE SSNLGIKFKR EEEEVSPTCE FCGSDLRPFL SNVDLSCDYN bmy_14738T0/1-612 PPSILSFKQE SSNLGIKFKK EEEEVSPTCE FCGSDLRTFL SNVDLSCDYS BACU012808/1-655 PPSILSFKQE SSNLGIKFKK EEEEVSPTCE FCGSDLRTFL SNVDLSCDYS 301 350 ENSBTAP00000055377/1-667 R-----HRVC LVDHVDLICS LYNC-QKIQS SKAELISINP HAAHGSEVDR ENSTTRP00000007115/1-639 RSELVEQTSC CSYFQNLIDY IYEGKQKIQS SKAELICIDP HAAHGSEVDR bmy_14738T0/1-612 SSELVEHTSC CSYFQNLIDY IYEEKQKLQS SKAELICIEP HAAHGSEVDR BACU012808/1-655 SSELVEHTSC CSYFQNLIDY IYEEKQKIQS SKAELICIDP HAAHGSEVDR 351 400 ENSBTAP00000055377/1-667 LKAKEKALRR KQERQMAKHY EILAKEQPTF SEEDAKHYKT ISYQLSVDIP ENSTTRP00000007115/1-639 LKAKEKALRR KLERRMAQHY AMFTKEQTPF SEEDAKQFKT ISYQLSMDIP bmy_14738T0/1-612 LKAKEKALWR KQERQMAKHY AVLTKEQTTF SEEDAKQFKT ISYQLSMNIP BACU012808/1-655 LKAKEKALRR KQERQMAKHY AVLTKEQTTF SEEDAKQFKT ISYQLSMDIP 401 450 ENSBTAP00000055377/1-667 EIESVKEELT DYQVDKRNIS IVCCDSRIAC GKIVTNELFE KHYKHGSKFL ENSTTRP00000007115/1-639 EVESAKEELT DYQLDERNIS IVCCDSRIAC GKIMTNELFE KHYKHGSKFL bmy_14738T0/1-612 EVESPKEELT DYQLDKRNIS IVCCDSRIAC GKIMTNELFE KHYKHGSKFL BACU012808/1-655 EVESAKEELT DYQLDKRNIS IVCCDSRIAC GKIMTNELFE KHYKHGSKFL 451 500 ENSBTAP00000055377/1-667 TSFPDGTTQI FYPSGNLAII RVPNKINGFT CIVQEDMPTN PAILALLDSS ENSTTRP00000007115/1-639 TSFPDGTTQI FYPSGNLAII RVPNEINGFT CIIQEDMPTN PAILAVLDSS bmy_14738T0/1-612 TSFPDGTTQI FYPSGNLAII RVPNKINGFT CIVQEDVPTN PAILAVLDSS BACU012808/1-655 TSFPDGTTQI FYPSGNLAII RVPNKINGFT CIVQEDVPTN PAILAVLDSS 501 550 ENSBTAP00000055377/1-667 GRSSCYHPNG NVWVYINILG GQYSDQAGNR VRAWNWSSSV ISSPFVSFKP ENSTTRP00000007115/1-639 GRSSCYHPNG NVWVYINILG GQCSDQAGNR VRAWNWSSSV TSSPFVSFKP bmy_14738T0/1-612 GRSSCYHPNG NVWVYINILG GQYSDQAGNR VRAWNWSSSV TSSPFVSFKP BACU012808/1-655 GRSSCYHPNG NVWVYINILG GQYSDQAGNR VRAWNWSSSV TSSPFVSFKP 551 600 ENSBTAP00000055377/1-667 VFLALNHYVG IRILEQDKIS ITFLAMGQQA RISVGTKVKL LNAKEIPALR ENSTTRP00000007115/1-639 VFLALNRYVG IRILEQDKIS ITFLAMGQQA RISVGTKVKL PNPEEIPALR bmy_14738T0/1-612 VFLALNHYVG IRILEQDKIS ITFLAMGQQA RISVGTKVKL PNPKEIPALR BACU012808/1-655 VFLALNHYVG IRILEQDKIS ITFLAMGQQA RISVGTKVKL PNPKEIPALR 601 650 ENSBTAP00000055377/1-667 YLNGDDLLLL ASLIKIRRLF HKLEGCVNFP SSQVWEKLKQ PSYLSSLSLK ENSTTRP00000007115/1-639 HLNGDDLLLL ASLIKIRRLF HKLEGCVNFP SSQVREKLKQ PSYLSSLSLK bmy_14738T0/1-612 YLNGDDLLLL ASLIKIRRLF HKLEGCVNFP SSQVWEKFKQ PSYLSSLSLK BACU012808/1-655 YLNGDDLLLL ASLIKIRRLF HKLEGCVNFP SSQVWEKLKQ PSYLSSLSLK 651 700 ENSBTAP00000055377/1-667 LIALCHNSGM KQDIITTIAA MINENI ENSTTRP00000007115/1-639 LIALCHNSGM KQDTITTIAA LINEKI bmy_14738T0/1-612 LIALCHNSGM KQDTITTIAA LINENI BACU012808/1-655 LIALCHNSGM KQDTITTIAA LINENI