KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:34 2014 Check: 00 .. Name: ENSBTAP00000055393/1-710 Len: 900 Check: 2800 Weight: 1.00 Name: BACU014252/1-542 Len: 900 Check: 1340 Weight: 1.00 Name: bmy_18179T0/1-520 Len: 900 Check: 918 Weight: 1.00 Name: ENSP00000296955/1-539 Len: 900 Check: 3096 Weight: 1.00 Name: ENSTTRP00000010514/1-675 Len: 900 Check: 8527 Weight: 1.00 // 1 50 ENSBTAP00000055393/1-710 -SPGGKKIWA QRLCEVIAIF LICITLVNSP LTFFSFPGDG CGHIVTYKDS BACU014252/1-542 ---------- ---------- ---------- --------DG CGHIVTYKDS bmy_18179T0/1-520 ---------- ---------- ---------- ---------- ---------- ENSP00000296955/1-539 MVPGARGGGA LARAAGRGLL ALLLAVSAPL RLQAEELGDG CGHLVTYQDS ENSTTRP00000010514/1-675 ---------- ---------- ---------- --------DG CGHIVTYKDS 51 100 ENSBTAP00000055393/1-710 GTMTSKNYPW TYPNHTVCEK TITVPKGKRL ILRLGDLDIE SQTCASDYLL BACU014252/1-542 GTMTSKNYPG TYPNHTVCEK TITVPKGKRL ILRLGDLDIE SQTCASDYLL bmy_18179T0/1-520 ---------- ---------- ---------- ---------- ---------- ENSP00000296955/1-539 GTMTSKNYPG TYPNHTVCEK TITVPKGKRL ILRLGDLDIE SQTCASDYLL ENSTTRP00000010514/1-675 GTMTSKNYPG TYPNHTICEK TITVPKGKRL ILRLGDLDIE SQTCASDYLL 101 150 ENSBTAP00000055393/1-710 FTSSSDQYGP YCGSMTMPKE LLLNTNEVTV RFESGSHTSG RGFLLTYASS BACU014252/1-542 FTSSSDQYGP YCGSMTVPKE LLLNTNEVTV RFESGSHISG RGFLLTYASS bmy_18179T0/1-520 ---------- ---------- --MNT----- ---------- ---------- ENSP00000296955/1-539 FTSSSDQYGP YCGSMTVPKE LLLNTSEVTV RFESGSHISG RGFLLTYASS ENSTTRP00000010514/1-675 FTSSSDQYGP YCGSMTVPKE LLLNTSEVTV RFESGSHISG RGFLLTYASS 151 200 ENSBTAP00000055393/1-710 D--------- ---HPDLITC LDRANHYLKT EYSKFC--PA GCRDVPGDIS BACU014252/1-542 DHPVNPQLPL KQKHPTGFSS VSRLFPDWHA PAAPSCRMPA LLRVEPCNLA bmy_18179T0/1-520 ---------- ---------- ---------- ---------- ---------- ENSP00000296955/1-539 D--------- ---HPDLITC LERASHYLKT EYSKFC--PA GCRDVAGDIS ENSTTRP00000010514/1-675 D--------- ---HPDLITC LERANHYLKT EYSKFC--PA GCRDIAGDIS 201 250 ENSBTAP00000055393/1-710 GNVVDGYRD- -TSLLCKAAI HAGVIADEVG GQISVFLRKG LSRYEGILAN BACU014252/1-542 AGLVGKARNP RTSLLCKAAI HAGVIADEVG GQIGVLLRRG VSRYEGILAN bmy_18179T0/1-520 ---------- -TSLLCKAAI HAGVIADEVG GQIDVLLRRG VSRYEGILAN ENSP00000296955/1-539 GNMVDGYRD- -TSLLCKAAI HAGIIADELG GQISVLQRKG ISRYEGILAN ENSTTRP00000010514/1-675 GNVVHGYRD- -TSLLCKAAI HAGVIADEVG GQIGVLLRRG MSRYEGILAN 251 300 ENSBTAP00000055393/1-710 GVLSRDGSLS DKRFLFTSNG CSGSLSLEPD RQIRASSSWE WINETGDQVR BACU014252/1-542 GVLSRHGSLS DKRFLFTSNG CSRSLSLEPD RQIRASSSWE WINETGDQVR bmy_18179T0/1-520 GVLSRHGSLS DKRFLFTSNG CSRSLSLEPD RQIRASSSWE WINETGDQVR ENSP00000296955/1-539 GVLSRDGSLS DKRFLFTSNG CSRSLSFEPD GQIRASSSWQ SVNESGDQVH ENSTTRP00000010514/1-675 GVLSRHGSLS DKRFLFTSNG CSRSLSLEPD RQIRASSSWE WINETGDQVR 301 350 ENSBTAP00000055393/1-710 WSPGQARLQD QGPSWASGDR SKNHKQREWL RIDLGEKKKI TEGIRTTGST BACU014252/1-542 WSPGQARLQD QGPSWASGDR SKNHK-REWL RIDLGEKKKI T-GIRTTGST bmy_18179T0/1-520 WSPGQARLQD QGPSWASGDR SKNHK-REWL RIDLGEKKKI T-GIRTTGST ENSP00000296955/1-539 WSPGQARLQD QGPSWASGDS SNNHKPREWL EIDLGEKKKI T-GIRTTGST ENSTTRP00000010514/1-675 WSPGQARLQD QGPSWASGDR SKNHK-REWL RIDLGEKKKI T-GIRTTGST 351 400 ENSBTAP00000055393/1-710 QSDFDFYVKS FVMNFRNNNS KWKTYKGIVN NEEKVFQGNS NFRDPVRNNF BACU014252/1-542 QSNFNFYVKS FVMNFRNNNS KWETYKGIVN NEEKVFQGNS NFRDPVRNNF bmy_18179T0/1-520 QSNFNFYVKS FVMNFRNNNS KWETYKGIVN NEEKVFQGNS NFRDPVRNNF ENSP00000296955/1-539 QSNFNFYVKS FVMNFKNNNS KWKTYKGIVN NEEKVFQGNS NFRDPVQNNF ENSTTRP00000010514/1-675 QSNFNFYVKS FVMNFRNNNS KWETYKGIVN NEEKVFQGNS NFRDPVRNNF 401 450 ENSBTAP00000055393/1-710 IPPIVARYVR VIPQTWHQRI ALKVELLGCQ VAPSRTQGND SLVWHKTSVN BACU014252/1-542 IPPIVARYVR VIPQTWHQRI ALKVELLGCQ IAPSRTQGND SLVWSKTSLN bmy_18179T0/1-520 IPPIVARYVR VIPQTWHQRI ALKVELLGCQ IAPSRTQGND SLVWSKTSLN ENSP00000296955/1-539 IPPIVARYVR VVPQTWHQRI ALKVELIGCQ I----TQGND SLVWRKTSQS ENSTTRP00000010514/1-675 IPPIVARYVR VIPQTWHQRI ALKVELLGCQ IAPS----ND SLVWSKTSLN 451 500 ENSBTAP00000055393/1-710 TVGSTKGEDK TISKPIPSEE MPKGLNITTI VILLVLFFVL A-AGVAIFAV BACU014252/1-542 TVGSTNREEE TILKPIPSEE MPKGLNVVTV VTPLVLLVLL V-AGVGIFVV bmy_18179T0/1-520 TVGSTNREDE TILKPIPSEE MPKGLNVITI VTPLVLLVLL V-AGVGIFVV ENSP00000296955/1-539 TSVSTKKEDE TITRPIPSEE TSTGINITTV AIPLVLLVVL VFAGMGIFAA ENSTTRP00000010514/1-675 TVGSTNREDE TILKPIPSEE MPKGLNVITI VTPLVLLVLL V-AGVGIFVV 501 550 ENSBTAP00000055393/1-710 LRKKKKKGNP YGSSKTQKTD CWKQIKYPFA RHQSAEFTIS YNNEKEMTQK BACU014252/1-542 LRKRKKKGNP YGSAKAQKTD CWKQIKYPFA RHQSAEFTIS YDNEKEITQK bmy_18179T0/1-520 LRKRKKKGNP YGSAKAQKTD CWKQIKYPFA RHQSAEFTIS YDNEKEMTQK ENSP00000296955/1-539 FRKKKKKGSP YGSAEAQKTD CWKQIKYPFA RHQSAEFTIS YDNEKEMTQK ENSTTRP00000010514/1-675 LRKRKKKGNP YGSAKAQKTD CWKQIKYPFA RHQSAEFTIS YDNEKEMTQK 551 600 ENSBTAP00000055393/1-710 LDLITSDIAD ---------- ---------- ---------- ---------- BACU014252/1-542 LDLITSDMAE ---------- ---------- ---------- ---------- bmy_18179T0/1-520 LDLITSDMAD ---------- ---------- ---------- ---------- ENSP00000296955/1-539 LDLITSDMAG ---------- ---------- ---------- ---------- ENSTTRP00000010514/1-675 LDLVTSDMAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 601 650 ENSBTAP00000055393/1-710 ---------- ---------- ---------- ---------- ---------- BACU014252/1-542 ---------- ---------- ---------- ---------- ---------- bmy_18179T0/1-520 ---------- ---------- ---------- ---------- ---------- ENSP00000296955/1-539 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010514/1-675 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 651 700 ENSBTAP00000055393/1-710 ---------- ---------- ---------- ---------- ---------- BACU014252/1-542 ---------- ---------- ---------- ---------- ---------- bmy_18179T0/1-520 ---------- ---------- ---------- ---------- ---------- ENSP00000296955/1-539 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010514/1-675 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 701 750 ENSBTAP00000055393/1-710 ---------- ---------- ---------Y QQPLMIGTET VTRKGSTFRP BACU014252/1-542 ---------- ---------- ---------L QS-------- ---------- bmy_18179T0/1-520 ---------- ---------- ---------Y QQPLMIGTGT VARKGSTFRP ENSP00000296955/1-539 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010514/1-675 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVLL---- ---------- 751 800 ENSBTAP00000055393/1-710 MDTEADAAGP GTEAGGHYDC PLPAGRHEYA LPLTNPEPEY ATPIVERHLA BACU014252/1-542 -DTEI----- ---------- ---------- ---------- ---------- bmy_18179T0/1-520 MDTEADEAGP DAEAGGHYDC PLPAGRHEYA LPLTNPEPEY ATPIVERHLA ENSP00000296955/1-539 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010514/1-675 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000055393/1-710 RAHTFSARSG YRVPGPRPAH KHSLSSGAFS PAAGYQRPPS PAPAEPGYDQ BACU014252/1-542 ---------- ---------- ---------- ------FPKS PIQ------- bmy_18179T0/1-520 RAHTFSARSG YRVPGPGPAH KHSLSSGAFS PAAGYQLPQS PAPADPGYDK ENSP00000296955/1-539 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010514/1-675 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000055393/1-710 PK---GGGLA AGCAPPDHPK PQVSPASSAA YLAPRDCLRP LNPTAMTALL BACU014252/1-542 ---------- ---------- ---------- -------LRL LHLQGL---- bmy_18179T0/1-520 PKGGGGGGSA AGRADPAYQK PQVNPATNAA YLAPRDCLRP LNQTAMTALL ENSP00000296955/1-539 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010514/1-675 ---------- ---------- ---------- ---------- ----------