KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:26:35 2014 Check: 00 .. Name: ENSBTAP00000055414/1-1440 Len: 1730 Check: 8180 Weight: 1.00 Name: ENSTTRP00000015485/1-1504 Len: 1730 Check: 5844 Weight: 1.00 Name: bmy_00142T0/1-1021 Len: 1730 Check: 4150 Weight: 1.00 Name: BACU010481/1-1659 Len: 1730 Check: 205 Weight: 1.00 // 1 50 ENSBTAP00000055414/1-1440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015485/1-1504 ---------- ---------- ---------- ---------- ---------M bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------- BACU010481/1-1659 MVVTFAPVNV KTEVKSIEMH HEALSEALPG VNMGFSVKNV SVKDVRRGSV 51 100 ENSBTAP00000055414/1-1440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015485/1-1504 SESTSQEEPK PA-------- ---------- ---------- ---------- bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------- BACU010481/1-1659 AGDSKNDPPM EAVGFTAQVI ILNQPGLISA EYAPVLDCHT AHIAFKFAEL 101 150 ENSBTAP00000055414/1-1440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015485/1-1504 ---------- ---------- ---------- ---------- ---------- bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------- BACU010481/1-1659 KKIHHRSGKK LEDGPKFLKS GDAAIIDIVP GKPMCVESFS GYPPLGHFAI 151 200 ENSBTAP00000055414/1-1440 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015485/1-1504 ---------- --QENGKEDK ERNQEATKVK EPMK-SRSIP DSLALGICSN bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------- BACU010481/1-1659 CDMRQTIAVG VIKENGKEDR ERNQEATEVK EPIKSSRSIP DSLALGTCSN 201 250 ENSBTAP00000055414/1-1440 ---------- --DLNLENQP KMSTCSIKES KTRGSKNIVF RKPAKVIFSL ENSTTRP00000015485/1-1504 VAGTAANKVK SQELNL-EQP KISTCSLEDS RI--SKNTVF RKPAEVIFNL bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------- BACU010481/1-1659 VAGTAANKVK SQELNLEEQP KISTCSIKDS RI--SKNTVF RKPAKVIFNL 251 300 ENSBTAP00000055414/1-1440 DQTAQDSNRE QPWKKNLLER VQARAQVMHQ KIIDKENLKK ELEKKEEEKL ENSTTRP00000015485/1-1504 DQTAQNSKLE QSWKKNLFER VQARAQAMQQ KIIDKENLKK ELEKKAEEKL bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------- BACU010481/1-1659 DQTTQSSKLE QSWKKNLFER LQARAQTMQQ KIIDKENLKK ELEKKAEEKL 301 350 ENSBTAP00000055414/1-1440 PRDNLAKEWF NTENMTLNTR AYLLDKLLPT LVPGMERMLM QVEKKKLLAD ENSTTRP00000015485/1-1504 PTDNLAKEWF STENMTLNTR AYLLDKLLPT LVPGMEKMLM QVEKKKLLAE bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------- BACU010481/1-1659 PRDNLAKEWF NTENMTLNTR AYLLDKLLPT LVPGTEKMLM QVEKKKLLAE 351 400 ENSBTAP00000055414/1-1440 VDIPTKFDPI NHLGEYLMRN NPNYIKDSGL SGYQRVMREI SEDLKIYVPN ENSTTRP00000015485/1-1504 VDIPTKFDPI NHLGEYLMRN NPNYIKDSGM SGYQRVMRNI AEDLKINVPS bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------- BACU010481/1-1659 VDIPTKFDPI NHLGEYLMRN NPNYIKDSGM SGYQRVMRNT TEDLKIYVPN 401 450 ENSBTAP00000055414/1-1440 TTYNRVSKIK ENIKQKREQK EYINDIKAKV ANARKQALQE QFNEWILDPK ENSTTRP00000015485/1-1504 TTYNRVSRMK ENIKQKREQI ECMNKVKAKV ANTWKQALQE QFNEWILDPK bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------- BACU010481/1-1659 TTYNRVSKMK ENIKQKREQR ECMNKVKAKV ANTWKQALQE QFNEWILDPK 451 500 ENSBTAP00000055414/1-1440 GMIPMVVIQN VLYEFFQNPD LQLETCCLPV DIADSMKPRL NKTEFIQLIS ENSTTRP00000015485/1-1504 GMIPMIVIQN VLHEFFQNPD FQLEACCQQL DIADSMEPRL NKMEFIEFIY bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------- BACU010481/1-1659 GMIPMIVIQN VLHEFFQNPD FQL-ACCQQL DIADSMEPRL NKMEFIEFIS 501 550 ENSBTAP00000055414/1-1440 LHIAGFKSET FEKLLKHLCH CAAEFREVIK TDMRRQMFAD LFLHCDRGKV ENSTTRP00000015485/1-1504 SHIAGFKSEM FEELLKHLCH CADEFREVIK TDMRRQMFAE LFLHCDHGKV bmy_00142T0/1-1021 ---------- ---------- ---------- ---------- ---------V BACU010481/1-1659 SHIAGFKSEM FEELLKHLCH CADEFREVIK TDMRRQMFAE LFLHCDCGKV 551 600 ENSBTAP00000055414/1-1440 GFLDRQRTLA LLETFYDQSS KVLRGTLRNP RQWPFVEFGE IDLPEFWGDM ENSTTRP00000015485/1-1504 GFLDRQRTLA LLETFYDQSS KVLRGLLRNP RQWPFVEFGE IDLPEFWGDM bmy_00142T0/1-1021 GFLDRQRTLA LLETFYDQSS KVLRG----- ---PFVEFGE IDLPEFWGDM BACU010481/1-1659 GFLDRQRTLA LLETFYDQSS KVLRGLLRNP RQWPFVEFGE IDLPEFWGDM 601 650 ENSBTAP00000055414/1-1440 DNQKHIYEDF DNVLLEMNTL PSE---KHFS KTQSKLLASP EDQHEH--YR ENSTTRP00000015485/1-1504 DNQKHIYEDF DKVLLEMNTL HASKHTKHAS KSQSKLLANP EDQHKHDKHR bmy_00142T0/1-1021 DNQKHIYEDF DKVLLEMNTL LSE---NHAS KSQSKLLANP EDQHKHEKHR BACU010481/1-1659 DNQKHIYEDF DKVLLEMNTL LSE---KHAS KSQSKLLANP EDQHKHDKHR 651 700 ENSBTAP00000055414/1-1440 ESTLPQSPPE QQRGATVEQG PNGISTREQE QPEESTGEQE LNEESVSKEG ENSTTRP00000015485/1-1504 KSTLPQSPPE QQRGTTANQE PNRISTK--E QDKESTGEQE LNKESVAKRR bmy_00142T0/1-1021 KSTLPQSPPE QQRGTTANQE PNRISTNEQE QDKESTGEQE PNKESVAKRG BACU010481/1-1659 KSTLPQSPPE QQRGTTANQE PNRISTNEQE QDKESTGEQE LNKESVAKRG 701 750 ENSBTAP00000055414/1-1440 TYTGSTPEQR SSRELITEQR PHHEPITEQG VPQGTHIEST AEQGLSEESI ENSTTRP00000015485/1-1504 TYTGSTPEQG SSRELIIEQR PHIESITEQG EPPGIHTEPA AEQGLYRESV bmy_00142T0/1-1021 TYTGSTPEQA SSRGLIIEQR PHNESITEQG VPPGIHTEPA AEQGLYRESV BACU010481/1-1659 TYTGSTPEQG SSRELIIEQR PHNESITEQG VPPGIHTEPA AEQGLYRESV 751 800 ENSBTAP00000055414/1-1440 TTEGQHEGST TGQGSHGKST EEQGSRR-ES QSDQGQPRET MAEQEAHRES ENSTTRP00000015485/1-1504 TAQGQHEEST TGQGSHRGSP EEQGPHR-ES VLEQGPHRGS VAEQGAHRES bmy_00142T0/1-1021 TAQGQQEEST TGQGSHRGSP EEQGPHR-ES VLEQGPHRGS IAEQESHRES BACU010481/1-1659 TAQGQHEEST TGQGSHRGSP EEQGPHREES LLDQGRPRGS VAEQGARRES 801 850 ENSBTAP00000055414/1-1440 QSDQ------ ---------- ---------- ----GPHGG- --------ET ENSTTRP00000015485/1-1504 VVEQ------ ---------- ---------- ----GPLRGS TAEQQPPIET bmy_00142T0/1-1021 LLDQGHPRGS TAEQEARRES LLDQGRPRGS VAEQGAHRGS TAEQQPPIET BACU010481/1-1659 VVEQ------ ---------- ---------- ----GPHRGS TAEQQPPTET 851 900 ENSBTAP00000055414/1-1440 ILEEQQDTDL TSQSRKGSLT GESKTSRESI SFEHTEIPPQ EGRTQAHAYE ENSTTRP00000015485/1-1504 IPEKQEDIDS TSQSRKGSIL RESEKSREAI SFEYTEILPQ EERTQGQIYE bmy_00142T0/1-1021 IPEKQEDIDS TSQSRKGSIL RESEKSREAI SFEYTEIPPQ EERTQGQIYE BACU010481/1-1659 IPEKQEDIDS TSQSRKGSIL RESEKSREAI SFEYTEIPPQ EERTQGQICD 901 950 ENSBTAP00000055414/1-1440 ELLFVSPELQ AKTGVSIPED HLSEPAKKEV QKDKSCEPKS QKIEGKSWT- ENSTTRP00000015485/1-1504 EQLFMSPELQ EKISVSSRKG HLSETEKKEV QRDKSCEPKS QKIEGKSWS- bmy_00142T0/1-1021 EQLFMSPELQ EKISVSSRKG HLSETEKKEV QKDKSCEPKS QKIEGKSWS- BACU010481/1-1659 EQLFMSPELQ EKISVSSRKG HLSETEKKEV QKDKSCEPKS QKIEGKSWSG 951 1000 ENSBTAP00000055414/1-1440 ---------- ---------- ---------- --GELLTCNW NMKYAKHEDE ENSTTRP00000015485/1-1504 ---------- ---------- ---------- --GELLTCNW NTKYAKCEEE bmy_00142T0/1-1021 ---------- ---------- ---------- --GELLTCNW NTKYAKCEEE BACU010481/1-1659 NSSFNPPFIH TLEQNHYVSE VTLAILWNVY FIGELLTCNW NTKYAKCEEE 1001 1050 ENSBTAP00000055414/1-1440 EQAHLIYDNS RFTDLHSIIR NIQSYKEIKG RSTFNGVSVN LLQFVQLLET ENSTTRP00000015485/1-1504 EQANLIYGNS RFTDLHSMIR NIQSYKEIKG RSAFNGVSFN LLQFVQLLET bmy_00142T0/1-1021 EQANLIYGNS RFTDLHSIIR NIQSYKEIKG RSVFNGVSFN LLQFVQLLET BACU010481/1-1659 EQANLIYGNS RFTDLHSIIR NIQSYKEIKG RSAFNGVSFN LLQFVQLLET 1051 1100 ENSBTAP00000055414/1-1440 FVGEDSPLSV SEALTSFFRK GFVETKEEKM SGLEKARQNA SRIRRELLLK ENSTTRP00000015485/1-1504 FVGEDAPLSV SEALTSFFKK GFVETKEEKR SGLEEARQNA SQVRRGLLLN bmy_00142T0/1-1021 FVGEDAPLSV SEALTSFFKK GFVETKEEKM SGLEEARQNA SQVRRGLLLN BACU010481/1-1659 FVGEDAPLSV SEALTSFFKK GFVETKEEKM RGLEEARQNA SQVRRGLLLN 1101 1150 ENSBTAP00000055414/1-1440 ALFQKWDCDG SGFLDLKEID ELLYTYKEGM EKESMKKAKL HVQFPKLHPG ENSTTRP00000015485/1-1504 ALFQKWDCDS SGFLDLNEVD ELLYTYKEGM EKESMKKAKL HIQFPKPHPG bmy_00142T0/1-1021 ALFQKWDCDG SGFLDLNEVD ELLYTYKEGM EKESMKKAKL HIQFPKPHPG BACU010481/1-1659 ALFQKWDCDG SGFLDLNEVD ELLYTYKEGM EKESMKKAKL HIQFPKPHPG 1151 1200 ENSBTAP00000055414/1-1440 HEVRLSSKQF QKYIELVVSE LRGNEEEVLE SVVEFLMNSL ERSHVESLRN ENSTTRP00000015485/1-1504 HEVRLSSKQF QKYIELVVSE LRGNEDQVLE SVVEFLMNTL ERSRVESLRN bmy_00142T0/1-1021 HEVRLSSKQF QKYIELVVSE LRGNEDQVLE SVVEFLMNTL ERSHVESLRN BACU010481/1-1659 HEVRLSSKQF QKYIELVVSE LRGNEDQVLE SVVEFLMNTL ERSHVESLRN 1201 1250 ENSBTAP00000055414/1-1440 CARQKWLHQI QRAAETSGVS LEPVYTETFK ALTQDAEAHG NKKISAHISL ENSTTRP00000015485/1-1504 CARQKWLHQI QRAAETSGVS LEPVYAETFK ALTQDAEAHG NKKISAHISL bmy_00142T0/1-1021 CARQKWLHQI QRAAETSGVS LEPVYAETFK ALTQDAEAHG NKKISAHISL BACU010481/1-1659 CARQKWLHQI QRAAETSGVS LEPVYVETFK ALTQDAEAHG NKKISAHISL 1251 1300 ENSBTAP00000055414/1-1440 LEENLLLPDR GNVLLRNVAC TLDDAPFVLK RVLYRDMKGI SFTVVDEGKP ENSTTRP00000015485/1-1504 LEENLLLPDR GKVLLKNIAC TLDDAPFVLN KVLYRDMKGI SFTVVDEGKP bmy_00142T0/1-1021 LEENLLLPDR GNVLLRNIAC TLDDAPYVLN RVLYRDMKGI SFTVVDEGKP BACU010481/1-1659 LEENLLLPDR GNVLLRNIAC TLDDAPFVLN RVLYRDMKGI SFTVVDEGKP 1301 1350 ENSBTAP00000055414/1-1440 IHVPQVQHHG NIYFWNHSRK KSDHNGSFLA LPLQDAYMRI FGVLAVDTLR ENSTTRP00000015485/1-1504 IHVPQVQNHG NIFFWNHSRK KNDQNGSFLA LPLQDAYMRI FGVLAVDTLR bmy_00142T0/1-1021 VHVPQVQNHG NIFFWNHSRK KNDQNGSFLA LPLQDAYMRI FGVLAVDTLR BACU010481/1-1659 VHVPQVQNHG NIFFWNHSRK KNDQNGSFLA LPLQDAYMRI FGVLAVDTLR 1351 1400 ENSBTAP00000055414/1-1440 DPQKINIFLP HEIRFYQGVA NVFSTAYHYV HSREHILHIV ITGIGWLYNI ENSTTRP00000015485/1-1504 DPQKINIFLP HEIKFYQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_00142T0/1-1021 DPQKVNIFLP HEIKFYQGVA NVFSTAYHYV HSREHILHIV ITGISWLYNI BACU010481/1-1659 DPQKINIFLP HEIKFYQGVA NVFSTAYHYV HSREHILHIV ITGISWLYNI 1401 1450 ENSBTAP00000055414/1-1440 TPSITAISTY FVEPNSEKDS DYVLRNMMVT GQQGLTEIHK NPSVIFRKTC ENSTTRP00000015485/1-1504 XXXXXXXXXX XXXXXXXXDS DYVLRNMMVT GHLGLTEIHR NPPIIFRKTC bmy_00142T0/1-1021 TSSITAITTY FIEPSPA--- ---------- ---------- ---------- BACU010481/1-1659 TSSITAITTY FIEPSPAKDS DYVLRNMMVT GHLGLTEVHR NPPIIFRKTC 1451 1500 ENSBTAP00000055414/1-1440 IFRDFLFKCT DSSGVVLASV CGENHIVVPL RERTGEALGV LDVNIGKSKM ENSTTRP00000015485/1-1504 IFRDFLFKCT DSSEVVLASV CGENHIVVPL RERTGEALGA LDVNIGRSKM bmy_00142T0/1-1021 -------KCT DSSEVVLASV CGENHIVVPL RERTGEALGV LDVNIGRSKM BACU010481/1-1659 IFRDFLFKCT DSSEVVLASV CGENHIVVPL RERTGEALGV LDVNIGRSKM 1501 1550 ENSBTAP00000055414/1-1440 LLYREFKDLQ KMLKVIQLAC SEILGEFSGE IKKNYILEIE SVGEVQRAGI ENSTTRP00000015485/1-1504 LLYREFKDLQ KMTKVIQVAC NEILGELSGE IKKNYILEIE NVGAVQRAGI bmy_00142T0/1-1021 LLYREFKDLQ KMTKVIQVAC NEILGELSGE IKKNYILEIE NVGEVQRAGI BACU010481/1-1659 LLYREFKDLQ KMAKVIQVAC NEILGELSGE IKKNYILETE NVGEVQRAGI 1551 1600 ENSBTAP00000055414/1-1440 LFFRVMLQEL QECLSLLTSS DFVSLLLHDY DPLAEVKAPP DSQSQDLKAN ENSTTRP00000015485/1-1504 LFFRVMLKEL QQCLRLLTSM DFVSLLLYDY DLLAEPKS-P DSQSQELEAN bmy_00142T0/1-1021 LFFRVMLKEL QQCLRLLTSM DFVSLLLYDY DPLAEPKS-P DSQSQELEAN BACU010481/1-1659 LFFRVMLKEL QQCLRLLTSM DFVSLLLYDY DPLAEPKS-P DSQSQELEAN 1601 1650 ENSBTAP00000055414/1-1440 IKLVQDILKG IIVFFHPELK SSSDLESWDH CKLYVNQQLV ENICDFDPTA ENSTTRP00000015485/1-1504 IRLVQDILK- IILFFHPELE LSSDLG-WDQ CKLXXXXXXX XXXXXXXXXX bmy_00142T0/1-1021 IKLVQDILKG IILFFHPELE LSSDLGNWDQ ---------F ENICDFDPTA BACU010481/1-1659 IKLVQDILKG IILFFHPELE LSSDLGNWDQ CKLYVNQYLV EHICDFDPTA 1651 1700 ENSBTAP00000055414/1-1440 MELKVNLRLI AEYFESTDHS RIEVWKFGNS AIEYLYHWAH ICLALIKLNK ENSTTRP00000015485/1-1504 XXXXXXXXXX DEYIR--DHS RIEVWTFGNT AIEYLYHWAH ICSALMKLNK bmy_00142T0/1-1021 RKLKVNLKLI DEYIR----- ---------- ---------- ---------- BACU010481/1-1659 RKLKVNLKLI DEYIR----- --------GN PPEAVY---- ---------- 1701 1750 ENSBTAP00000055414/1-1440 KISGAIPPPL PSKTDSCVYA KMPGGSLPGK ENSTTRP00000015485/1-1504 KINSAISPPL PSETDSYVY- KMPGGSLLG- bmy_00142T0/1-1021 ---------- ---------- ---------- BACU010481/1-1659 -MNGTVKSEL KNLALFFFLT HLKN------