KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:38 2014 Check: 00 .. Name: ENSTTRP00000004163/1-491 Len: 547 Check: 2534 Weight: 1.00 Name: ENSP00000367407/1-498 Len: 547 Check: 7459 Weight: 1.00 Name: ENSBTAP00000055459/1-529 Len: 547 Check: 7802 Weight: 1.00 Name: bmy_16409T0/1-490 Len: 547 Check: 8092 Weight: 1.00 Name: BACU017221/1-437 Len: 547 Check: 4397 Weight: 1.00 // 1 50 ENSTTRP00000004163/1-491 ---------- ---------- ---------- ---------- ---------- ENSP00000367407/1-498 MAEDSESAAS QQSLELDDQD TCGIDGDNEE ETEHAKG--- ---------- ENSBTAP00000055459/1-529 MAEDSESAAS QQSLELDDQD TCGIDGDNEE ETEHAKG--- ---------- bmy_16409T0/1-490 MAEDSESAAS QQSLELDDQD TCGIDGDNEE ETEHTKGFYI MTCCCFYKPC BACU017221/1-437 ---------- ---------- ---------- ---------- MTCCCFYKPC 51 100 ENSTTRP00000004163/1-491 -----SPGGD LGAKKKKKKQ KRKKEKPNSG GTKSDSASDS QEIKIQPPSK ENSP00000367407/1-498 -----SPGGY LGAKKKKKKQ KRKKEKPNSG GTKSDSASDS QEIKIQQPSK ENSBTAP00000055459/1-529 -----SPGGD LGAKKKKKKQ KRKKEKPNSG GTKSDSASDS QEIKIQPPSK bmy_16409T0/1-490 EFPNRSPGGD LGAKKKKKKQ KRKKEKPNSG GTKSDSASDS QEIKIQPPSK BACU017221/1-437 EFPNRSPGGD LGAKKKKKKQ KRKKEKPNSR GTKSDSASDS QEIKIQPPSK 101 150 ENSTTRP00000004163/1-491 HSTIWQQVSA GATMGGAALV GGWIGLRIYH KNPTIPMQKL QDIQRAMELL ENSP00000367407/1-498 ---------- ---------- ---------- -NPSVPMQKL QDIQRAMELL ENSBTAP00000055459/1-529 QGSLWDIYSF PRTHAGTQIK GDWIGLRIYH SNSTIPVQKL QDIQRAMELL bmy_16409T0/1-490 KIFTFSFFWV SNYLNNSTAP SGSRFQQEQP WNPTIPMQKL QDIQRAMELL BACU017221/1-437 ---------- ---------- ---------- -NPTIPMQKL QDIQRAMELL 151 200 ENSTTRP00000004163/1-491 SACQGPARNI DEAAKHRYQF WDTQPVPKLN EVITSHGAIE ADKENVRQEP ENSP00000367407/1-498 SACQGPARNI DEAAKHRYQF WDTQPVPKLD EVITSHGAIE PDKDNVRQEP ENSBTAP00000055459/1-529 SACQGPARNI DEAAKHRYQF WDTQPVPKLN EVITSHGAIE ADKENVRQEP bmy_16409T0/1-490 SACQGPARNI DEAAKHRYQF WDTQPVPKLN EVITSHGAIE ADKENVRQEP BACU017221/1-437 SACQGPARNI DEAAKHRYQF WDTQPVPKLN EVITSHGAIE ADKENVRQEP 201 250 ENSTTRP00000004163/1-491 YSLPQGFMWD TLDLGNAEVL RELYTLLNEN YVEDDDNMFR FDYSPEFLLW ENSP00000367407/1-498 YSLPQGFMWD TLDLSDAEVL KELYTLLNEN YVEDDDNMFR FDYSPEFLLW ENSBTAP00000055459/1-529 YSLPQGFMWD TLDLGNAEVL RELYTLLNEN YVEDDDNMFR FDYSPEFLLW bmy_16409T0/1-490 YSLPQGFMWD TLDLGNAEVL RELYTLLNEN YVEDDDNMFR FDYSPEFLLW BACU017221/1-437 YSLPQGFMWD TLDLGNAEVL RELYTLLNEN YVEDDDNMFR FDYSPEFLL- 251 300 ENSTTRP00000004163/1-491 ALRPPGWLLQ WHCGVRVSSN KKLVGFISAI PANIRI-DSV KKMVEINFLC ENSP00000367407/1-498 ALRPPGWLLQ WHCGVRVSSN KKLVGFISAI PANIRIYDSV KKMVEINFLC ENSBTAP00000055459/1-529 ALRPPGWLLQ WHCGVRVSSN KKLVGFISAI PANIRIYDSV KKMVEINFLC bmy_16409T0/1-490 ALRPPGWLLQ WHCGVRVSXN KKLVGFISAI PANIRIYDSV KKMVEINFLC BACU017221/1-437 ---------- ---------- ---------- --------CV KKMVEINFLC 301 350 ENSTTRP00000004163/1-491 VHKKLRSKRV APVLIREITR RVNLEGIFQA VYTAGVVLPK PVATCRYWHR ENSP00000367407/1-498 VHKKLRSKRV APVLIREITR RVNLEGIFQA VYTAGVVLPK PIATCRYWHR ENSBTAP00000055459/1-529 VHKKLRSKRV APVLIREITR RVNLEGIFQA VYTAGVVLPK PVATCRYWHR bmy_16409T0/1-490 VHKKLRSKRV APVLIREITR RVNLEGIFQA VYTAGVVLPK PVATCRYWHR BACU017221/1-437 VHKKLRSKRV APVLIREITR RVNLEGIFQA VYTAGVVLPK PVATCRYWHR 351 400 ENSTTRP00000004163/1-491 SLNPRKLVEV KFSHLSRNMT LQRTMKLYRL PDXXXXXXXX XXXXXXXXXX ENSP00000367407/1-498 SLNPRKLVEV KFSHLSRNMT LQRTMKLYRL PDVTKTSGLR PMEPKDIKSV ENSBTAP00000055459/1-529 SLNPRKLVEV KFSHLSRNMT LQRTMKLYRL PDATKTSGLR PMEPRDIKAV bmy_16409T0/1-490 SLNPRKLVEV KFSHLSRNMT LQRTMKLYRL PD-------- ---------- BACU017221/1-437 SLNPRKLVEV KFSHLSRNMT LQRTMKLYRL PDVTKTSGLR PMEPRDIKAV 401 450 ENSTTRP00000004163/1-491 XXXXXXXXXX XXXXXVMDEE EVAHWFLPQE HIIDTFVVEX XXXXXXXXXX ENSP00000367407/1-498 RELINTYLKQ FHLAPVMDEE EVAHWFLPRE HIIDTFVVES PNGKLTDFLS ENSBTAP00000055459/1-529 QELTNTYLKQ FHLAPVMDEE EVAHWFLPQE HIIDTFVVEN SSGKLTDFLS bmy_16409T0/1-490 ---------- ---------- ---------- ---------N SSGKLTDFLS BACU017221/1-437 QELTNSYLKQ FHLAPVMDEE EVAHWFLPQE HIIDTFVVEN SSGKLTDFLS 451 500 ENSTTRP00000004163/1-491 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXKGFDV ENSP00000367407/1-498 FYTLPSTVMH HPAHKSLKAA YSFYNIHTET PLLDLMSDAL ILAKSKGFDV ENSBTAP00000055459/1-529 FYTLPSTVMH HPAHKSLKAA YSFYNIHTET PLLDLMSDAL IIAKLKGFDV bmy_16409T0/1-490 FYTLPSTVMH HPAHKSLKAA YSFYNIHTET PLLDLMNDAL IIAKLKGFDV BACU017221/1-437 FYTLPSTVMH HPAHKSLKAA YSFYNVHTET PLLDLMNDAL IIAKLKGFDV 501 550 ENSTTRP00000004163/1-491 FNALDLMENK TFLEKLKFGI GDGNLQYYLY NWRCPGTESE KVGLVLQ ENSP00000367407/1-498 FNALDLMENK TFLEKLKFGI GDGNLQYYLY NWRCPGTDSE KVGLVLQ ENSBTAP00000055459/1-529 FNALDLMENK TFLEKLKFGI GDGNLQYYLY NWRCPGTESE KVGLVLQ bmy_16409T0/1-490 FNALDLMENK TFLEKLKFGI GDGNLQYYLY NWRCPGTESE KVGLVLQ BACU017221/1-437 FNALDLMENK TFLEKLKFGI GDGNLQYYLY NWRCPGTESE KVGLVLQ