KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:40 2014 Check: 00 .. Name: ENSP00000392252/1-850 Len: 1273 Check: 2220 Weight: 1.00 Name: ENSBTAP00000055464/1-833 Len: 1273 Check: 4467 Weight: 1.00 Name: ENSTTRP00000004845/1-645 Len: 1273 Check: 3302 Weight: 1.00 Name: bmy_14633T0/1-484 Len: 1273 Check: 6600 Weight: 1.00 Name: BACU013501/1-1127 Len: 1273 Check: 2438 Weight: 1.00 // 1 50 ENSP00000392252/1-850 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055464/1-833 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 MAREELGYDR VPPLERGRPD AGSYAPDTKP SDLQLSSRLP PCFSHKTWVF 51 100 ENSP00000392252/1-850 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055464/1-833 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 SVLMGSCLLV TSGFSLYLGN VFPLEMDYLR CAAGSCIPSA IVSFAVWRRN 101 150 ENSP00000392252/1-850 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055464/1-833 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 VSAIPNFQIL FVSTFAVTTT CLIWFGCKLV LNPSAVDINF NLILLLLLEL 151 200 ENSP00000392252/1-850 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055464/1-833 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 FMAATVIISA RSGEAHCRQK GSVSESTNIL YEVTFPARVL KSYSVIEVIA 201 250 ENSP00000392252/1-850 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055464/1-833 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 GVSAIIGGVI ALNVDDAISG PHLSVTFFWI LVACFPSAIA SHVTAECPSR 251 300 ENSP00000392252/1-850 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055464/1-833 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 SLVEVLIAIC SLAAPLLFTA SGYLSFSVMR IMDVFKDYPP AFKPSYDALL 301 350 ENSP00000392252/1-850 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055464/1-833 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 LLLMLELLLQ AGLNTATVIQ CVRFKAGASW DAAQTGPQGR PAGEGPRSVA 351 400 ENSP00000392252/1-850 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055464/1-833 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 LVHVQVSYTA SGDPAQQRSA CTHPEPSVND AGVDPVHCGS SVFSGVGPLS 401 450 ENSP00000392252/1-850 -----MEPER KGLSLASSSD GDGREENKLK QGISQDLASS SRLDRYKIAR ENSBTAP00000055464/1-833 ---------- ---------- --------LK RGVSQDLVSS PKLDRFKIAK ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 KALKTDSSHL HVSVASVSRA GQEDKCLELK RGISQDLISS PKLDIYKIAR 451 500 ENSP00000392252/1-850 QLTEKAIKEK KIFSIYGHYP VVRAALRRKG WVEKKFHFLP KVIPDVEDEG ENSBTAP00000055464/1-833 QLTDKAIKEK KIFSICGHYP VIRSTLRRKG WVEKKFHFLT SLVPSVDGDG ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 QLTDTAIKEK KIFSIYGHYP VIRAALRRKG WVEKRFRFLP KVVPSVEDEG 501 550 ENSP00000392252/1-850 ARVNDDTCAK VKENQEMALE KTDNIHDVMS RLVKNEMPYL LWTIKRDIID ENSBTAP00000055464/1-833 EGVPENKHAE GKENQDVALE KADDIHDVMS RLVKNETPYF LWTIKRDVID ENSTTRP00000004845/1-645 ---------- ---------- ---------- ---------- ---------- bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 EGAPENKRAE GKGNQEVALE KTDDIHDVM- ---------- ---------- 551 600 ENSP00000392252/1-850 YHSLTYDQML NHYAKTASFT TKIGLCVNMR SLPWYVPANP DSFFPRCYSL ENSBTAP00000055464/1-833 YHSLSCDQML NHYGKTASFT TKIGLCVSMR SLPWYVQANP DTFFPRCYSL ENSTTRP00000004845/1-645 ---------- ---------- --IGLCVSLR SLPWYVQANP DSFFPRCYGL bmy_14633T0/1-484 ---------- ---------- ---MLCACPS PFPRA----- ----ATCWHL BACU013501/1-1127 ---------- ---VLRGSLA PSLGLGDPEL PLRWWIQQGP QP--PTVRAV 601 650 ENSP00000392252/1-850 CTESEQQEFL EDFRRTMASS ILKWVVSHQS CSRSSRSKPR DQREEAGSSD ENSBTAP00000055464/1-833 CTESEKQEFL DDFRQTVASS ILKWVVSQQS ----SRSKPR SRREEARDSG ENSTTRP00000004845/1-645 CTESEKREFL XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14633T0/1-484 GT-------- -----ALGVS RAFWIL---- ---------- ---------- BACU013501/1-1127 GANKHVQE-- DDFRRTVASS ILKWVVSQQN C---SRSTPK GWREKAGDSD 651 700 ENSP00000392252/1-850 LSSRQDAENA EAKLRGLPGQ LVDIACKVCQ AYLGQLEHED IDTSADAVED ENSBTAP00000055464/1-833 -ASRKVPEGA GPRLMGLSGQ FVDVACKVCK AYLGRLEHED IDLTEDSATD ENSTTRP00000004845/1-645 XXXXXXPEST GSRLTGLSGQ LVDVACRACE AYLGRLEHED IDLSEDAAKD bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 PSNRQVPESA GSRLTGLSGQ LVDVACRVCE AYLGRLEHGD IDLSEDAAKD 701 750 ENSP00000392252/1-850 LTEAEWEDLT QQYYSLVHGD AFISNSRNYF SQ-----CQA LLNRITSVNP ENSBTAP00000055464/1-833 LTEDEWNDLT QQYYSLVQLL AFVINLSFYV RL----ECSE YRNRIHKTNN ENSTTRP00000004845/1-645 LTEDEWKDLT QQYYRLIHEP VTLRTLRVFA SSGATAACQA LLKKITSVNP bmy_14633T0/1-484 ---------- -----LCSGE AFISNSRNYF SQ-----CQA LLNKITSVNP BACU013501/1-1127 LTEDEWQDLT QQYYTLLHGE AFISNSRNYF SQ-----CQA LLNKITSVNP 751 800 ENSP00000392252/1-850 QTDIDGLRNI WIIKPAAKSR GR----DIVC MDRVEEILEL AAADHPLSRD ENSBTAP00000055464/1-833 HRIKKRMSHI IINKDFKKSR KK-EMRDIVC MNHVEEILEL VAADQPPAKD ENSTTRP00000004845/1-645 QTEIDGLRNI WIVKPAAKSR GRGESQDIVC LNHVEEILEL -ATDPPPAKG bmy_14633T0/1-484 QTEIDGLRNI WIVKPAAKSR GR----DIVC MNHVEEILEL VATDQAPAKD BACU013501/1-1127 QTEIDGLRNI WIVKPAAKSR GR----DIVC MNHVEEILEL VATDQAPAKH 801 850 ENSP00000392252/1-850 NKWVVQKYIE TPLLICDTKF DIRQWFLVTD WNPLTIWFYK ESYLRFSTQR ENSBTAP00000055464/1-833 -KWVVQKYIE TPLLIYDTKF DIRQWFLVTD WNPLTIWFYK ESYLRFSTQR ENSTTRP00000004845/1-645 NKWVVQKYIE TPLLIYDTKF DIRQWFLVTD WNPLTIWFYK ESYLRFSTQR bmy_14633T0/1-484 NKWVVQKYIE APLLVYDTKF DIRQWFLVTD WNPLTIWFYK ESYLRFSTQR BACU013501/1-1127 HKWVVQKYIE TPLLVYDTKF DTRQRFLVTD WNALAIWFYK ESHVRFSAQR 851 900 ENSP00000392252/1-850 FSLDKLDSAI HLCNNAVQKY LKNDVGRSPL LPAHNMWTST RFQEYLQRQG ENSBTAP00000055464/1-833 FSLDKLDSAI HLCNNSIQKH LKNDKDRSPL LPCHNMWTST RFQEYLQKRG ENSTTRP00000004845/1-645 FSLDNLDSAI HLCNNSIQKH LKNDKDRSPL LPDHNMWTST EFQEYLQKRG bmy_14633T0/1-484 FSLDNLDSAV HLCNNSIQKH LKNDEDRSPL LPDHNMWTST RFQEYLQRRG BACU013501/1-1127 FSLHSLDSAI HLCNNSIQKH LKNDKDRSPL LPGHNMWTST RFREYLQRRG 901 950 ENSP00000392252/1-850 RGAVWGSVIY PSMKKAIAHA MKVAQDHVEP RKNSFELYGA DFVLGRDFRP ENSBTAP00000055464/1-833 RGAVWSSVIY PSMKRAITNT MKVAQDHVEP RKNSFELYGA DFILGRDFRP ENSTTRP00000004845/1-645 RGAVWGSVIY PSMKRAVTNT MKVAQDHVDP RKNSFELYGA DFILGCDFKP bmy_14633T0/1-484 RGAVWGSVIY PSMKRAITNT MKVAQDHVDP RKNSFELYGA DFILGRDFKP BACU013501/1-1127 RGAVWGSVIY PSMKRAITNT MKVAQDHVDP RKNSFELYGA DFILGRDFKP 951 1000 ENSP00000392252/1-850 WLIEINSSPT MHPSTPVTAQ LCAQVQEDTI KVAV----DR SCDIGNFELL ENSBTAP00000055464/1-833 WLIEINSSPT MHASTPVTAQ LCAQVQEDTI KVVVDRKADR NCDIGNFELL ENSTTRP00000004845/1-645 WLIEINSSPT MHASTPVTAR LCAQVQEDTI KVVVDRKVDR NCDVGNFELL bmy_14633T0/1-484 WLIEINSSPT MHASTPVTAQ LCAQVQEDTI KVVVDRKVDR NCDVGNFELL BACU013501/1-1127 WLIEINSSPT MHASTPVTAQ LCAQVQEDTI KVVVDRKVDR NCDVGNFELL 1001 1050 ENSP00000392252/1-850 WRQPVVEPPP FSGSDLCVAG VSVRRARRQV LPVCNLKASA SLLDAQPLKA ENSBTAP00000055464/1-833 WKQPAVGLPT SQGSDLLVEG VGMRKARKPM PAIPSVDVVP PLSDIHPLKQ ENSTTRP00000004845/1-645 WRQPAVELPP FPGSDLFVEG VGVWKAKKQM TPISNFDFAS PLLDIHPPGE bmy_14633T0/1-484 WRQPAVALPP FPGSDLFVEG VGVGKAKKQM PPISNFDFAS PLLDIHPLRE BACU013501/1-1127 WRQPAVELPP FPGSDLFVEG VGVGKAKKQM PPISNFDFAS PLLDVHPLRE 1051 1100 ENSP00000392252/1-850 RGPSAMPDPA QGPPSPALQR DLGLKEEKGL PLALLAPLRG AAESGGAAQP ENSBTAP00000055464/1-833 RCPSAMLDLG GGPPLMALHQ DFTLKDEQVL PCSLPVHLHR LVERSAKAKS ENSTTRP00000004845/1-645 RCPPAMPHLA PGPPRMALQQ DLKLKDEKVL PCTLPVP-KR LAERSAKVKC bmy_14633T0/1-484 RCPSAMPGLA PGPPRMALQQ DLKLKDGKVL PCTLPVPLKR LAERSAKVKC BACU013501/1-1127 RCPSAMPGLA PGPPRMALQQ DLKLKDEKVL PCTLPVPLKR LAERSAKVKC 1101 1150 ENSP00000392252/1-850 TRTKAAGKVE LPACPCRHVD SQAPNTGVPV AQPAKSWDPN QLNAHPLEPV ENSBTAP00000055464/1-833 GHRESGGKIE LPSCTSQHPD YKAPRPTLAK AESDRHSDPN SLHVRPLPSV ENSTTRP00000004845/1-645 GHREF-GKRE PPTCTFQHLD NKALSSALAR AESDKHLDPN LLNVHP-ASL bmy_14633T0/1-484 GHRESGGKIE PPTCTFQRLD NKALSSAVSK AESDEHLDPN LLNVHPLPSL BACU013501/1-1127 GHREPGGKIE PPTCTFQRLD NKALSSALAK AESDKHLDPN LLNVHPLPSL 1151 1200 ENSP00000392252/1-850 LRGLKTAEGA LRPPPGGK-- --GEGTVCSR LPHHGHHVAA CQTTGTTWDG ENSBTAP00000055464/1-833 LPSVKTVEGA PFQPPRPPEG RLGEGGTCSP VPVFPHHCCS CQDFGTLVNG ENSTTRP00000004845/1-645 LPSVKTVESA QFQLPRPS-- --G------- ---------- ---------- bmy_14633T0/1-484 LPSVKTAESA QFQPPRPP-- --G------- ---------- ---------- BACU013501/1-1127 LPSVKTAESA QFQPPRPS-- --G------- ---------- ---------- 1201 1250 ENSP00000392252/1-850 GPGVCFLRQL LASELPMGPG LPRDPRAPPC LVCRGLLPPA GPCKRCRSFC ENSBTAP00000055464/1-833 GYGVCRTGRP LPPLLPLGRR LPRALPA-PC LVCRGSLPPA GPCKRCRSFC ENSTTRP00000004845/1-645 ---------- ---------- LPRALPA-PC LVCRGSLPPA GPCKRCCSFC bmy_14633T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU013501/1-1127 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000392252/1-850 AAVLQGASFV RLG-GRSCSP RTP ENSBTAP00000055464/1-833 AAVLQGASFV PLCDEPGSGL WTP ENSTTRP00000004845/1-645 AAVLQGASVV PLGNGPGGGL CTP bmy_14633T0/1-484 ----NSAMLV PV-------- --- BACU013501/1-1127 ----NSAVLV PI-------- ---