KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:42 2014 Check: 00 .. Name: bmy_14634T0/1-210 Len: 340 Check: 3174 Weight: 1.00 Name: ENSTTRP00000016268/1-264 Len: 340 Check: 8947 Weight: 1.00 Name: ENSP00000374633/1-336 Len: 340 Check: 1148 Weight: 1.00 Name: BACU013500/1-231 Len: 340 Check: 8414 Weight: 1.00 Name: ENSBTAP00000055493/1-319 Len: 340 Check: 5978 Weight: 1.00 // 1 50 bmy_14634T0/1-210 ---------- --KYFQQLLP GAPHVHVRVR PG-------- ---------- ENSTTRP00000016268/1-264 ---------- ---------- ---------- ---------- ---------- ENSP00000374633/1-336 MSRSVLEALT SSTAMQCVPS DGCAMLLRVR ASITLHERLR GLEACAMSLD BACU013500/1-231 MSGSVLEALT LSTAMKCAPH DGCSLLLRVN ASLTLREGLR GLEACSMSLD ENSBTAP00000055493/1-319 MPRSVLGALG LSTAMKCSPP DGCSLLLRVN ASLTFHESLQ GLEVCSTSLD 51 100 bmy_14634T0/1-210 ---------- GPDPLHR--- -HELQVHFDC FEVRVAQSLY VTLRTVPHFC ENSTTRP00000016268/1-264 ---------- ---------- ---LQMHFDC FEVSVAQSLY VTLRTVPHFC ENSP00000374633/1-336 TQETQCQSVW VARASHRQQG GQQLQVHFGC FAVSVAQHLY VTLRTIPHFC BACU013500/1-231 TQETQCQSVR VPRASRRLQV GQQLQVHFDC FEVSVAQSLY VTLRTVPHFC ENSBTAP00000055493/1-319 TQETQCQTVQ VPRASHR-QA GQQLQVRFDC FKVGVAQSLY VTLRTVPHFC 101 150 bmy_14634T0/1-210 GVQLGQRYRV EAGKLSYWVD RSRKVVLVQV P-ESGGS--- DYYVRLCLKW ENSTTRP00000016268/1-264 GVQLDERYHV EAGKLSYSVD RSRKVILVQV P-ESGGPDYH DYYVRLCLKW ENSP00000374633/1-336 GVQLDQRHLV EAGKLSYWVD RRRKAILVQV PRASGSP--- DYYLRLCLKR BACU013500/1-231 GVQLGQRYHV E--------- ---------- ---------- ---------- ENSBTAP00000055493/1-319 GVQLGQQYHT EAQKLSYWVD RSRKVILVQV P-ESGGP--- DYYVRLCLKR 151 200 bmy_14634T0/1-210 FTCEDAGAPV RVTANRVSQR VSLPYKQELS CLCLEGWSAT PDAVRIQTCP ENSTTRP00000016268/1-264 FTCEDAGAPV RVTANGVSRR VSLPYKQELS CLCLEGWSAT PDAVRIQTCP ENSP00000374633/1-336 FTCEDAGAPV RVTANSVSQA VFLPYSQELP CLCLEGWSAT PDAVRIQICP BACU013500/1-231 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055493/1-319 FICEDAGAPV RVIGNRVSRR VSLPYSQELS CLCLEVWSAT PDAVRIQTCP 201 250 bmy_14634T0/1-210 FEDGKHG--- --DTVGRHPL PPG---EPGA ELGACLSHEW P--------- ENSTTRP00000016268/1-264 FXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000374633/1-336 FENDTEALEV LWDTVYYHPE SQTLSWEPAC PVSGHVSLCW RPGPGAGCRK BACU013500/1-231 ---DTET--- LWDAVHYHPE SQALSWEPAC PMSGRVSLCW RPGPGPQCLE ENSBTAP00000055493/1-319 FKNDTES--- LWDAIRYHPG SQALSWEPAC PMRGRVSLCW QPGPGAHCLE 251 300 bmy_14634T0/1-210 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016268/1-264 XXXXXXXXXX XXXXXXXXXX XXXXXXFSTS LGFPVKCHFE QLRFPALPAS ENSP00000374633/1-336 LQQSSQLVHR RVQYPLVDTQ PQLCLKFSTS WGSWVRCPFE QRRFPTPPTS BACU013500/1-231 LQHSGRPAHS RVQYPLVDTQ PQLCLKFSTS LGFPVRCPCE QPRFPALPAS ENSBTAP00000055493/1-319 LKHSGRPARG RVQYPLVDTQ PQLCLKFSTS LGFQVRCPFK QPRFPAPPGS 301 350 bmy_14634T0/1-210 -CESVLAPRA RAPVPGAGAL RPARTQ---- ---------- ENSTTRP00000016268/1-264 RCACVTEGR- RGPPRAAGCS RPPPSLRVTP QRTLRWPLW- ENSP00000374633/1-336 RCTCVTGGS- HSSLPANAHS RPARSLQPQV TWQPPLLLPS BACU013500/1-231 RCACVTEGR- RGRPRAAECS RPRPPLR--- ---------- ENSBTAP00000055493/1-319 RCACVTRGR- RGPPPAVDCS RPPPSLRP-- ----------