KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 18:26:42 2014 Check: 00 ..
Name: bmy_14634T0/1-210 Len: 340 Check: 3174 Weight: 1.00
Name: ENSTTRP00000016268/1-264 Len: 340 Check: 8947 Weight: 1.00
Name: ENSP00000374633/1-336 Len: 340 Check: 1148 Weight: 1.00
Name: BACU013500/1-231 Len: 340 Check: 8414 Weight: 1.00
Name: ENSBTAP00000055493/1-319 Len: 340 Check: 5978 Weight: 1.00
//
1 50
bmy_14634T0/1-210 ---------- --KYFQQLLP GAPHVHVRVR PG-------- ----------
ENSTTRP00000016268/1-264 ---------- ---------- ---------- ---------- ----------
ENSP00000374633/1-336 MSRSVLEALT SSTAMQCVPS DGCAMLLRVR ASITLHERLR GLEACAMSLD
BACU013500/1-231 MSGSVLEALT LSTAMKCAPH DGCSLLLRVN ASLTLREGLR GLEACSMSLD
ENSBTAP00000055493/1-319 MPRSVLGALG LSTAMKCSPP DGCSLLLRVN ASLTFHESLQ GLEVCSTSLD
51 100
bmy_14634T0/1-210 ---------- GPDPLHR--- -HELQVHFDC FEVRVAQSLY VTLRTVPHFC
ENSTTRP00000016268/1-264 ---------- ---------- ---LQMHFDC FEVSVAQSLY VTLRTVPHFC
ENSP00000374633/1-336 TQETQCQSVW VARASHRQQG GQQLQVHFGC FAVSVAQHLY VTLRTIPHFC
BACU013500/1-231 TQETQCQSVR VPRASRRLQV GQQLQVHFDC FEVSVAQSLY VTLRTVPHFC
ENSBTAP00000055493/1-319 TQETQCQTVQ VPRASHR-QA GQQLQVRFDC FKVGVAQSLY VTLRTVPHFC
101 150
bmy_14634T0/1-210 GVQLGQRYRV EAGKLSYWVD RSRKVVLVQV P-ESGGS--- DYYVRLCLKW
ENSTTRP00000016268/1-264 GVQLDERYHV EAGKLSYSVD RSRKVILVQV P-ESGGPDYH DYYVRLCLKW
ENSP00000374633/1-336 GVQLDQRHLV EAGKLSYWVD RRRKAILVQV PRASGSP--- DYYLRLCLKR
BACU013500/1-231 GVQLGQRYHV E--------- ---------- ---------- ----------
ENSBTAP00000055493/1-319 GVQLGQQYHT EAQKLSYWVD RSRKVILVQV P-ESGGP--- DYYVRLCLKR
151 200
bmy_14634T0/1-210 FTCEDAGAPV RVTANRVSQR VSLPYKQELS CLCLEGWSAT PDAVRIQTCP
ENSTTRP00000016268/1-264 FTCEDAGAPV RVTANGVSRR VSLPYKQELS CLCLEGWSAT PDAVRIQTCP
ENSP00000374633/1-336 FTCEDAGAPV RVTANSVSQA VFLPYSQELP CLCLEGWSAT PDAVRIQICP
BACU013500/1-231 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000055493/1-319 FICEDAGAPV RVIGNRVSRR VSLPYSQELS CLCLEVWSAT PDAVRIQTCP
201 250
bmy_14634T0/1-210 FEDGKHG--- --DTVGRHPL PPG---EPGA ELGACLSHEW P---------
ENSTTRP00000016268/1-264 FXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000374633/1-336 FENDTEALEV LWDTVYYHPE SQTLSWEPAC PVSGHVSLCW RPGPGAGCRK
BACU013500/1-231 ---DTET--- LWDAVHYHPE SQALSWEPAC PMSGRVSLCW RPGPGPQCLE
ENSBTAP00000055493/1-319 FKNDTES--- LWDAIRYHPG SQALSWEPAC PMRGRVSLCW QPGPGAHCLE
251 300
bmy_14634T0/1-210 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000016268/1-264 XXXXXXXXXX XXXXXXXXXX XXXXXXFSTS LGFPVKCHFE QLRFPALPAS
ENSP00000374633/1-336 LQQSSQLVHR RVQYPLVDTQ PQLCLKFSTS WGSWVRCPFE QRRFPTPPTS
BACU013500/1-231 LQHSGRPAHS RVQYPLVDTQ PQLCLKFSTS LGFPVRCPCE QPRFPALPAS
ENSBTAP00000055493/1-319 LKHSGRPARG RVQYPLVDTQ PQLCLKFSTS LGFQVRCPFK QPRFPAPPGS
301 350
bmy_14634T0/1-210 -CESVLAPRA RAPVPGAGAL RPARTQ---- ----------
ENSTTRP00000016268/1-264 RCACVTEGR- RGPPRAAGCS RPPPSLRVTP QRTLRWPLW-
ENSP00000374633/1-336 RCTCVTGGS- HSSLPANAHS RPARSLQPQV TWQPPLLLPS
BACU013500/1-231 RCACVTEGR- RGRPRAAECS RPRPPLR--- ----------
ENSBTAP00000055493/1-319 RCACVTRGR- RGPPPAVDCS RPPPSLRP-- ----------