KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:42 2014 Check: 00 .. Name: ENSTTRP00000013100/1-252 Len: 275 Check: 8309 Weight: 1.00 Name: ENSP00000361795/1-263 Len: 275 Check: 3534 Weight: 1.00 Name: ENSBTAP00000055495/1-247 Len: 275 Check: 6414 Weight: 1.00 Name: bmy_08789T0/1-218 Len: 275 Check: 9158 Weight: 1.00 Name: BACU015452/1-160 Len: 275 Check: 5013 Weight: 1.00 // 1 50 ENSTTRP00000013100/1-252 AETWPLTAFP EYRGPLLLCL ELASPLWS-G SAPPLHETWF VEWTLFE--- ENSP00000361795/1-263 MESWALAVFP EYRVSLLWCL ELASPLWSLG QAPPLHETWF VGHTWFQGRG ENSBTAP00000055495/1-247 PEMWPLAVFP EYRGASLAVP GTNIPFVELG SALPLRETW- ---DFVSGKG bmy_08789T0/1-218 PRARRSRGRP G--------- ---------G AAPP------ ---------- BACU015452/1-160 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013100/1-252 ----RGEVVK SE--APVLGC WLQGXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000361795/1-263 KRSPRAEVSR PEPGAPLLGC WLQWGAPSPG PLCLLFRLCS CTCFAPLPAG ENSBTAP00000055495/1-247 KRESSPGVSR LQPEAPLLGS WLQGGSPRPG PQPLL----- ------ALPG bmy_08789T0/1-218 ---------R PA-------- ----RPATTP PPPSRRSGQP ESAGALGAAG BACU015452/1-160 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013100/1-252 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXHLESHRPP ENSP00000361795/1-263 ADMDPNPRAA LERQQLRLRE RQKFFEDILQ PETEFVFPLS HLHLESQRPP ENSBTAP00000055495/1-247 ADMDPNPRAA LERQQLRLRE RQKFFEDILQ PETEFVFP-S HLHPESHRPP bmy_08789T0/1-218 ADMDPNPRAA LERQQLRLRE RQKFFEDILQ PETEFVFPLS HLHLESHRPP BACU015452/1-160 --MDPNPRAA LERQQLRLRE RQKFFEDILQ PETEFVFPLS HLHLESHRPP 151 200 ENSTTRP00000013100/1-252 IGSISSMEVN VDTLEQVELI DLGDQDGADV FLPCEDPPPT PQTS------ ENSP00000361795/1-263 IGSISSMEVN VDTLEQVELI DLGDPDAADV FLPCEDPPPT PQSS------ ENSBTAP00000055495/1-247 IGSISSMEVN VDTLEQVELI DLGDQDGADV FLPCEDPPPT PQTS------ bmy_08789T0/1-218 IGSISSMEVN VDTLEQVEFI DLGDQDGADV FLPCEDPPPT PQTSGMPLYF BACU015452/1-160 IGSISSMEVN VDTLEQVEFI DLGDQDGADV FLPCEDPPPT PQTS------ 201 250 ENSTTRP00000013100/1-252 -----GVDDR PEEPSLPMPM ADRTTSRT-F SSSSDSSTNP HSPDVSDGGA ENSP00000361795/1-263 -----GMDNH LEELSLPVPT SDRTTSRTSS SSSSDSSTNL HSPNPSDDGA ENSBTAP00000055495/1-247 -----GVDER PEEPSLPVPT PDRTTSRT-S SLSSNSSTNP HSADASDGGA bmy_08789T0/1-218 GHLGTGVDDR PEEPSLPMPT ADRTTSRT-S SSSSDSSTNP HSPDVSDGGA BACU015452/1-160 -----GVDDR PEEPNLPMPT ADRTTSRT-F SSSSDSSTNP HSPDVSDGGA 251 300 ENSTTRP00000013100/1-252 DTPLAQSDEE EDGG-DGGAE PGACS ENSP00000361795/1-263 DTPLAQSDEE EERG-DGGAE PGACS ENSBTAP00000055495/1-247 DTPLAQSDEE EDGGHDGGAE PGACS bmy_08789T0/1-218 DTPLAQSDEE EDGG-DGGAE PGACS BACU015452/1-160 DTPLAQSDEE EDGG-DGGAE PGACS