KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 18:26:42 2014  Check: 00 ..

 Name: bmy_01703T0/1-226         Len:    240  Check:  7213  Weight:  1.00
 Name: BACU001214/1-231          Len:    240  Check:  6753  Weight:  1.00
 Name: ENSP00000382330/1-220     Len:    240  Check:  1559  Weight:  1.00
 Name: ENSBTAP00000055502/1-220  Len:    240  Check:  9853  Weight:  1.00

//


                          1                                                   50
bmy_01703T0/1-226         MLRPFPPTAG ALPSRAAMSE GESKESSGGE CPVCYDKFRD LEGAGRTLSC 
BACU001214/1-231          MLRPFPPTAG ALPSRAAMSE GESKESSGGE CPVCYDKFCD PEGAGRTLRC 
ENSP00000382330/1-220     ---------- -------MSE GESKDSSGSE CPVCYEKFRD LEGASRTLSC 
ENSBTAP00000055502/1-220  -------TAR ALPSCSAMSE GESKDSSGSE CPVCYEKFRE LQGASRTLSC 


                          51                                                 100
bmy_01703T0/1-226         GHMFCHDCLV KYLLSTRVDG QVQRTIVCPV CRYVTFLGKK SSCWPAKLDK 
BACU001214/1-231          GHMFCHDCLV KYLLSTRVDG QVQRTVVCPV CRYVTFLGKK SSCWPAKLDK 
ENSP00000382330/1-220     GHVFCHDCLV KYLLSTRVDG QVQRTLVCPI CRYVTFLSKK SSRWPSMLDK 
ENSBTAP00000055502/1-220  GHVFCHDCLV KYLLSTRVDG QVQRTIVCPI CRYVTFLSRK SSRWPAKLDK 


                          101                                                150
bmy_01703T0/1-226         SSQTLAVPMG LPPVPPPDTL GHANPLALSQ PFWRP----- ----SPNQGG 
BACU001214/1-231          TSQTLAVPMG LPPVPPPDTL GHANPLALSQ PFWRP----- ----SPNQGG 
ENSP00000382330/1-220     SSQTLAVPVG LPSVPPLDSL GHTNPLAASS PAWRPPPGQA RPPGSPGQSA 
ENSBTAP00000055502/1-220  SSQILAVPVG LPPSPLPDAL GHANPLALSQ PVWRS----- ----SPGQGG 


                          151                                                200
bmy_01703T0/1-226         QLPLDPPPGL PREPQIFIIS RYGMPLGEQE S-----SLAE LSEAPPVPSS 
BACU001214/1-231          QLPLDPPPGL PREPQIFIIS RYGVPLGEQD SILLGRSLAE FSEAPRGPSS 
ENSP00000382330/1-220     QLPLDLLPSL PRESQIFVIS RHGMPLGEQD SVLPRRSLAE LSEASLAPRS 
ENSBTAP00000055502/1-220  QLPLDPPPSL PREPQIFIIS RHGMPLGEQD SVLPRRSLAE LSGASLAPSS 


                          201                                                250
bmy_01703T0/1-226         TWTFCSRSRA LLPITLIAVV AVVAVAAAIL PWVLLVRKHV 
BACU001214/1-231          TWTFCSRSRA LLLITLIAAV AVVAVVAAIV PWVLLVRKRA 
ENSP00000382330/1-220     ARAFCCRSRA LLLITLI--- AVVAVVAAIL PWVLLVRKQA 
ENSBTAP00000055502/1-220  TRSFCCRSRA LLLITLI--- AVVAVVAAIL PWVLLVRKQ-