KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:43 2014 Check: 00 .. Name: BACU012239/1-147 Len: 285 Check: 4519 Weight: 1.00 Name: ENSP00000390020/1-273 Len: 285 Check: 4944 Weight: 1.00 Name: ENSBTAP00000055511/1-271 Len: 285 Check: 8348 Weight: 1.00 Name: bmy_20619T0/1-272 Len: 285 Check: 3547 Weight: 1.00 Name: ENSTTRP00000003990/1-265 Len: 285 Check: 7577 Weight: 1.00 // 1 50 BACU012239/1-147 ------VLAL W--------- ---------- ---------- ---------- ENSP00000390020/1-273 ------MGSG WVPW-VVALL VNLTRLDSSM TQG---TDSP EDFVIQAKAD ENSBTAP00000055511/1-271 ------MSPS WVPW-VVTFL STALRLDASV TQG---RDSP EDFVTQAKAD bmy_20619T0/1-272 MDVSLLRGTR VGPRGAGATL ADLLRSKSSS PINVVWHNKP EDFVIQAKAD ENSTTRP00000003990/1-265 ------MGSS WVPW-VVALL VTVVRLDSSM TQG---RDAP EDFVIQAKAD 51 100 BACU012239/1-147 ---------I SFTMSHFF-- ---------- ---------- --------SR ENSP00000390020/1-273 CYFTNGTEKV QFVVRFIFNL EEYVRFDSDV GMFVALTKLG QPDAEQWNSR ENSBTAP00000055511/1-271 CYFTNGTEKV RFVVRFIFNL EEYARFDSDL GMFVALTELG KPDAERWNNR bmy_20619T0/1-272 CYFTNGTENV QFVVRFIFNL EEYARFDSNL GMFVALTELG QPDAELWNNR ENSTTRP00000003990/1-265 CYFTNGTENV QFVVRFIFNL EEYARFDSNL GMFVALTELG QPDAELWNNR 101 150 BACU012239/1-147 P--------- ---------- ---------L VQPEVTVYPE RIPALQHSNL ENSP00000390020/1-273 LDLLERSRQA VDGVCRHNYR LGAPFTVGRK VQPEVTVYPE RTPLLHQHNL ENSBTAP00000055511/1-271 PDILARSRAS VDMLCRRNYY LGAPFTVGRR VQPEVTVYPE KTPALQHRNL bmy_20619T0/1-272 PDILARSRAS VDALCRHNYK LGAPFTVGRK VQPEVTVYPE RIPALQHRNL ENSTTRP00000003990/1-265 PDILARSRAS VDALCRHNYK LGAPFTVGRK VQPEVTVYPE RIPALQHHNL 151 200 BACU012239/1-147 LLCSVTGFYP GDIKITWFRN GQEQREGVMS TGLIRNGDWT FQTMVMLAMT ENSP00000390020/1-273 LHCSVTGFYP GDIKIKWFLN GQEERAGVMS TGPIRNGDWT FQTVVMLEMT ENSBTAP00000055511/1-271 LLCLVTGFYP GDIKVTWFRN GQEQREGIMS TGLIRNGDWT FQMTVMLAMT bmy_20619T0/1-272 LLCSVTGFYP GDIKITWFRN GQEQREGVMS TGLIRNGDWT FQTMVVLAMT ENSTTRP00000003990/1-265 LLCSVTGFYP GDIKITWFRN GQEQREGVMS TGLIRNGDWT FQTMVMLAMT 201 250 BACU012239/1-147 PELGEVYTCL VDHPSLLSPV SVEWSEN--- --QLILSGRN SANLTQDLCY ENSP00000390020/1-273 PELGHVYTCL VDHSSLLSPV SVEWRAQSEY SWRKMLSG-- IAAFLLGLIF ENSBTAP00000055511/1-271 PELGEVYTCL VDHPSLLSPV SVEWRAQSEY SWRKILSG-- AAAFLVGLVF bmy_20619T0/1-272 PELGEVYTCL VDHPSLLSPV SVEWRAQSEY SWRKMLSG-- IAAFLVGLVF ENSTTRP00000003990/1-265 PELGEVYTCL VDHPSLLSPV SVEWRAQSEY PWRKMLSG-- IAAFLVGLVF 251 300 BACU012239/1-147 LCVHLGYNTS SSSL------ ---------- ----- ENSP00000390020/1-273 LLVGIVIQLR AQKGYVRTQM SGNEVSRAVL LPQSC ENSBTAP00000055511/1-271 FLVGIVVHIR AWKGRVETPL PGNEVPRAVL PPP-- bmy_20619T0/1-272 LLVGIVIHTR ARKGRVETLL SGAE------ ----- ENSTTRP00000003990/1-265 LLVGIVIHTR ARKM------ --VTVPRAVL RPQPH