KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:26:46 2014 Check: 00 .. Name: ENSBTAP00000055579/1-784 Len: 2069 Check: 8231 Weight: 1.00 Name: BACU015964/1-2067 Len: 2069 Check: 6648 Weight: 1.00 Name: ENSTTRP00000004657/1-801 Len: 2069 Check: 6888 Weight: 1.00 Name: bmy_12378T0/1-799 Len: 2069 Check: 5409 Weight: 1.00 // 1 50 ENSBTAP00000055579/1-784 ---------- ---------- ---MEAS--- ---------- ---------- BACU015964/1-2067 METPLPKTTQ KRQVTAIIIL LLLWEVGGAV IKYSILEERH SGSFVANLAK ENSTTRP00000004657/1-801 ---------- ---------- ---MEVG--- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---MEAS--- ---------- ---------- 51 100 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 DLGLGLGELA SRGARILSKG NKQHLQVEHK SGNLLLKEKL DREELCGDVD ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 PCILHFQVLL KNPVQFIQGE LQLQDVNDHA PEFLENEILL KISESSHTGT ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 AFPLKIAQDL DVGSNTVQNY TISTNFHFHI FTRNRSDGRK YPELVLDKEL ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 DREEQPELRL TLTALDGGSP PKTGTSQVLI MVLDINDNAP EFARQLYEVQ ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 VPENSPVGSL VITVSARDLD AGTYGELSYS FFQSSNQVIQ AFEVNTVTGD ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 IRLKKMLDFE EIRSYRMEIE ASDGGGLSGK CTVAIEVTDV NDNAPELTMS ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000055579/1-784 ---------- ---------- --------RK LVC------- ---------- BACU015964/1-2067 LLMNDIPENT PDTVVAIFGI SDPDAGDNGK MMCYIQDHLP FLLKITVENF ENSTTRP00000004657/1-801 ---------- ---------- --------RK LIC------- ---------- bmy_12378T0/1-799 ---------- ---------- --------RK LIC------- ---------- 401 450 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 YTLVTEGALD RESRAKYNLT ITVTDMGTPR LKTEHNITVL VSDVNDNAPA ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 FTQTSYTLSV RENNSPALHI GTVRATDRDA GANAQVTYSL LPPLDPHVPL ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 ASLVSINPDN GHLFALRSLD YEALRAFEFR VGAADRGSPA LSSQALVRVL ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 VADDNDNAPF VLYPLQNASA PCTELVPRAA EAGYLVTKVV AVDGDSGQNA ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 WLSYQLLKAT EPGLFGVWAH NGEVRTARLL SERDAAKHRL VVLVKDNGEP ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 PLSASVTLHV LLVDGFSQPY LPAPEAEAAD AAPAAPLTVY LVVALASVSS ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000055579/1-784 ---------- -----RQRQV L--------- ---------- ---------- BACU015964/1-2067 LFLFSVLVFV ALLLEKPLQI FRAELWVRDI NDHSPVFLDR EIPLKILEGT ENSTTRP00000004657/1-801 ---------- -----RQRQV F--------- ---------- ---------- bmy_12378T0/1-799 ---------- -----RQRQV F--------- ---------- ---------- 751 800 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 TPGAAFLLES AQDSDVGTNN LRNYTISPNA YFHINVHDSG EGIIYPELVL ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 801 850 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 DRLLDQEEVP ELSLLLTALD GGSPPSSGTA LVCILVLDIN DNAHEFVQSL ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 851 900 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ----FFF--- ---------- BACU015964/1-2067 YKVQVPEDSL VGSLVVTVSA RHLDTGSNGE IVYAFFYATE RILKTFQINP ENSTTRP00000004657/1-801 ---------- ---------- ---------- ----FFF--- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ----FFF--- ---------- 901 950 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 TSGNFHLKAE LNYEAMQTYI LTIQAKDGRG LPGKCTTVVQ PPVENYYTLV ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 TDSSLDREKR AEYNITITVT DMGTPRLKTE HNITVLVPDV NDNAPAFTQT ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 SYTLSVRENN SPALHIGTVR ATDRDAGANA QVTYSLLPPL DPHVPLASLV ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000055579/1-784 ---------- ---------- ----LFLHLA LAGF------ ---------- BACU015964/1-2067 SINPDNGHLF ALRSLDYEAL RAFEFRVGAA DRGSPALSSQ ALVRVLVADD ENSTTRP00000004657/1-801 ---------- ---------- ----FFLGLA QAGS------ ---------- bmy_12378T0/1-799 ---------- ---------- ----FFLGLA QAGS------ ---------- 1101 1150 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 NDNAPFVLYP LQNASAPCTE LVPRAAEAGY LVTKVVAVDG DSGQNAWLSY ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 QLLKATEPGL FGVWAHNGEV RTARLLSERD AAKHRLVVLV KDNGEPPLSA ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ---------- BACU015964/1-2067 SVTLHVLLVD GFSQPYLPAP EAEAADAAPA APLTVYLVVA LASVSSLFLF ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ---------- bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000055579/1-784 ---------- ---------- ---------- ---------- ------ESRR BACU015964/1-2067 SVLVFVAVRL CRRGGAASVG RCSVPEGPFP GHLVDVSGTG TCPRATSTRR ENSTTRP00000004657/1-801 ---------- ---------- ---------- ---------- ------EFRR bmy_12378T0/1-799 ---------- ---------- ---------- ---------- ------EFRR 1301 1350 ENSBTAP00000055579/1-784 YSVVEEAEGS SFVTNLAKDL GLGQGELSSR GARVISKGNK LYLQLDQESG BACU015964/1-2067 YSVVEETEGS SSVTNLAKDL GLGQGELSRR GARVISKGNK LYLQLDQETG ENSTTRP00000004657/1-801 YSVVEETEGS SLVTNLAKDL GLGQGELSRR GARVISKGNK LYLQLDQETG bmy_12378T0/1-799 YSVVEETEGS SFVTNLAKDL GLGQGELSRR GARVISKGNK LYLQLDQETG 1351 1400 ENSBTAP00000055579/1-784 DLLLNKKLDR EELCGQTEPC VLRFQVLLEN PLEFFQAELQ VTDINDHTPV BACU015964/1-2067 DLLLNEKLDR EELCGQTEPC MLRFQVLLEN PLEFFQAELQ VIDINDHAPV ENSTTRP00000004657/1-801 DLLLNEKLDR EELCGQTEPC MLRFQVLLEN PLEFFQAELQ VIDINDHAPV bmy_12378T0/1-799 DLLLNEKLDR EELCGQTEPC MLRFQVLLEN PLEFFQAELQ VIDINDHAPV 1401 1450 ENSBTAP00000055579/1-784 FRDGDMLLKI SENSLPGTTF PLKNAQDMDV GQNNIENYII SPNSYFRVLT BACU015964/1-2067 FMDRDMLLKI SESSPPGTKF PLKNAQDMDV GRNNIENYII SPNSYFRVLT ENSTTRP00000004657/1-801 FMDRDMLIKI SESSPPGTKF PLKNAQDMDV GRNNIENYTI SPNSYFRVLT bmy_12378T0/1-799 FMDRDMLLKI SESSPPGTKF PLKNAQDMDV GRNNIENYII SPNSYFRVLT 1451 1500 ENSBTAP00000055579/1-784 RKRSDGRKYP ELVLDKVLDR EEEAEFRLTL TAQDGGSPPR SGTAHIYIEV BACU015964/1-2067 RKRSDGRKYP ELVLDKLLDR EEEPELRLTL TAQDGGSPPR FGTAQVYIEV ENSTTRP00000004657/1-801 RKRSDGRKYP ELVLDKVLDR EEEPELRLTL TAQDGGSPPR FGTAQVSIEV bmy_12378T0/1-799 RKRSDGRKYP ELVLDKLLDR EEEPELRLTL TAQDGGSPPR FGTAQVYIEV 1501 1550 ENSBTAP00000055579/1-784 VDINDNAPEF EQPFYRVKIP EDSPKGFLVV KVSATDVDTG VNGEISYSLS BACU015964/1-2067 VDINDNAPEF EPPFYRVQIP EDSPIGYLIV KVSATDIDIG VNREISYSLF ENSTTRP00000004657/1-801 VDINDNAPEF EPPFYRVQIP EDSPIGYLIV KVSATDIDIG VNREISYSLF bmy_12378T0/1-799 VDINDNAPEF EPPFYRVQIP EDSPIGYLIV KVSATDIDIG VNREISYSLF 1551 1600 ENSBTAP00000055579/1-784 QASEDISKTF EINAMTGEIR LKKQLDFETT QSYEVNIEAI DTGSLSGKCT BACU015964/1-2067 QASEEISKTF EINAMTGEIR LKKQLDFETT QSYEVNIEAR DTGSLSGKCT ENSTTRP00000004657/1-801 QASEEISKTF EINAMTGEIR LKKQLDFETT QSYEVNIEAR DTGSLSGKCT bmy_12378T0/1-799 QASEEISKTF EINAMTGEIR LKKQLDFETT QSYEVNIEAR DTGSLSGKCT 1601 1650 ENSBTAP00000055579/1-784 VLIQVVDVND NAPEVTMSAL TGQIPENSPE TVVAVFSVSD LDSEENGKVS BACU015964/1-2067 VLTQVMDVND NAPEVTMSAL TRQIPENSPE TVVAVFSVSD LDSEENGKIS ENSTTRP00000004657/1-801 VLTQVMDVND NAPEVTMSAL TRQIPENSPE TVVAVFSVSD LDSEENGKIS bmy_12378T0/1-799 VLTQVMDVND NAPEVTMSAL TRQIPENSPE TVVAVFSVSD LDSEENGKIS 1651 1700 ENSBTAP00000055579/1-784 CSVQYDLPFL LKSSMENFYT LVTERPLDRE TRAEYNIIIA VTDLGTPKLK BACU015964/1-2067 CYIQDDLPFL LKSSMENFYT LVTERPLDRE TRAEYNVTIT VTDMGTPRLK ENSTTRP00000004657/1-801 CYIQDDLPFF LKSSMENFYT LVTERPLDRE TRAEYNVTIT VTDLGTPRLK bmy_12378T0/1-799 CYIQDDLPFL LKSSMENFYT LVTERPLDRE TRAEYNVTIT VTDMGTPRLK 1701 1750 ENSBTAP00000055579/1-784 TEHNITVLVS DVNDNAPTFT QTSYTLWVRE NNSPALHIGS VSATDTDAGA BACU015964/1-2067 TEHSITVLVS DVNDNAPAFT QTSYTLSVRE NNSPALHIGT VRATDRDAGA ENSTTRP00000004657/1-801 TEHNITVLVS DVNDNAPAFT QTSYTLSVRE NNSPALHIGS VRATDRDAGA bmy_12378T0/1-799 TEHNITVLVS DVNDNAPAFT QTSYTLSVRE NNSPALHIGS VRATDRDAGA 1751 1800 ENSBTAP00000055579/1-784 NAQVTYSLLP PPDPLVPLAS LVSINPDNGH LFALTSLDYE ALRAFEFRVG BACU015964/1-2067 NAQVTYSLLP PLDAHVPLAS LVSINPDNGH LFALRSLDYE ALRAFEFRVG ENSTTRP00000004657/1-801 NAQVTYSLLP PLDAHVPLAS LVSINPDNGH LFALRSLDYE ALRAFEFRVG bmy_12378T0/1-799 NAQVTYSLLP PLDAHVPLAS LVSINPDNGH LFALRSLDYE ALRAFEFRVG 1801 1850 ENSBTAP00000055579/1-784 ATDRGSPALS SQALVRVLVA DANDNAPFVL YPLQNASAPC TELVPRAAEP BACU015964/1-2067 AADRGSPALS SQALVRVLVA DDNDNAPFVL YPLQNASAPC TELVPRAAEA ENSTTRP00000004657/1-801 AADRGSPALS SQALVRVLVV DDNDNAPFVL YPLQNASAPC TELVPRAAEA bmy_12378T0/1-799 AADRGSPALS SQALVRVLVA DDNDNAPFVL YPLQNASAPC TELVPRAAEA 1851 1900 ENSBTAP00000055579/1-784 GYLVTKVVAV DGDAGQNAWL SYQLLKATEP GLFGVWAHNG EVRTARLLSE BACU015964/1-2067 GYLVTKVVAV DGDSGQNAWL SYQLLKATEP GLFGVWAHNG EVRTARLLSE ENSTTRP00000004657/1-801 GYLVTKVVAV DGDSGQNAWL SYQLLKATEP GLFGVWAHNG EVRTARLLSE bmy_12378T0/1-799 GYLVTKVVAV DGDSGQNAWL SYQLLKATEP GLFGVWAHNG EVRTARLLSE 1901 1950 ENSBTAP00000055579/1-784 RDTPKQRLVV LVKDNGEPPL SASVTLHVLL VDGFSQPYLP APEAEAAASA BACU015964/1-2067 RDAAKHRLVV LVKDNGEPPL SASVTLHVLL VDGFSQPYLP APEAEAADAA ENSTTRP00000004657/1-801 RDAAKHRLLV LVKDNGEPPL SASVTLHVLL VDGFSQPYLP APEAEAADAA bmy_12378T0/1-799 RDAAKHRLVV LVKDNGEPPL SASVTLHVLL VDGFSQPYLP APEAEAADAA 1951 2000 ENSBTAP00000055579/1-784 PADPLTVYLV VALASVSSLF LFSVLVFVAV RLCRRGGAAS AGRCPVAEGH BACU015964/1-2067 PAAPLTVYLV VALASVSSLF LFSVLVFVAV RLCRRGGAAS VGRCSVPEGP ENSTTRP00000004657/1-801 PAAPLTVYLV VALASVSSLF VFSVLVFVAV RLCRRGGAAS VGRCSVPEGH bmy_12378T0/1-799 PAAPLTVYLV VALASVSSLF LFSVLVFVAV RLCRRGGAAS VGRCSVPEGP 2001 2050 ENSBTAP00000055579/1-784 FPGHLVDVSG TGTLSQSYQY EVCLMGGTGT GEFKFLKPVV PKFQSHFPGP BACU015964/1-2067 FPGHLVDVSG TGTLSQSYQY EVCLKGGSGT SEFKFLKPIV TNFQGHSPGP ENSTTRP00000004657/1-801 FPGHLVDVSG TGTLSQSYQY EVCLKGGSGT SEFKFLKPIV TNFQGHSPGP bmy_12378T0/1-799 FPGHLVDVSG TGTLSQSYQY EVCLKGGSGT SEFKFLKPIV TNFQGHSPAP 2051 2100 ENSBTAP00000055579/1-784 EI-------- --------- BACU015964/1-2067 DIEETPNFRK DFGFSIQ-- ENSTTRP00000004657/1-801 DIEETPNFRK DFGFSIQQQ bmy_12378T0/1-799 DIEETPNFRK DFGFSIQ--