KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:47 2014 Check: 00 .. Name: ENSP00000376952/1-583 Len: 618 Check: 4538 Weight: 1.00 Name: ENSBTAP00000055580/1-574 Len: 618 Check: 3910 Weight: 1.00 Name: ENSTTRP00000000192/1-591 Len: 618 Check: 2482 Weight: 1.00 Name: bmy_06719T0/1-587 Len: 618 Check: 2905 Weight: 1.00 Name: BACU006431/1-578 Len: 618 Check: 786 Weight: 1.00 // 1 50 ENSP00000376952/1-583 MALKKSSPSL DSGDSDSEEL PTFAFLKKEP SSTKRRQPER EEKIVVVDIS ENSBTAP00000055580/1-574 MAVNKSSLSL DSSYSDSEEL PTFAFLKNKP SSIKRRQPQE DEKIVVVDIS ENSTTRP00000000192/1-591 MAVEKSSLSL DSSESESEEL PTFAFLKKEP SSTKRRQPQK EEKIVVVDIS bmy_06719T0/1-587 MAVEKSSLSL DSSESDSEEL PTFAFLKKEP SSTKRRQPQK EEKIVVVDTS BACU006431/1-578 MAVETLSLSL ESSESDSEEL PTFAFLKKEP SSTERRQPQK EEKIVVVDTS 51 100 ENSP00000376952/1-583 DCEASCPPAP ELF-SPPVPE IAETVTQTQP VRLLSSESED EEEFIPLAQR ENSBTAP00000055580/1-574 DSEASC-PSP KLKDPPPIPE AAETVIQTEP VSVLSSGSEN EEEFMPLAKR ENSTTRP00000000192/1-591 DSEASCPPSP KLRDPPPVPE TAETVTRTEP VRVLSSGSED EEEFAPLAER bmy_06719T0/1-587 DSEASCPPSQ KLKDPPPVPE AAETVPQTEP VRVLSSGSED EEEFVPLAER BACU006431/1-578 DSEASCPPSQ KLKDPPPVPE AAETVPQTEP VRVLSSGSED EEEFAPLAER 101 150 ENSP00000376952/1-583 LTCKFLTHKQ LSPEDSSSPV KSVLDHQNNE GASCDW-KKP FPKIPEVPLH ENSBTAP00000055580/1-574 LICKFLTHKQ QSPEKSSSPF ERVWDHQK-- -ASHDWQKQP FTKIRDVPLC ENSTTRP00000000192/1-591 LTCKFLTHKQ LSPEDSSSPV KRVLDHQNNE GASRDWQNQP FTKIRDIPLC bmy_06719T0/1-587 LTCKFLTHKQ LSPEDSSSPV KRVLDHQNNE GASRDWQNQP FTKIRDIPXC BACU006431/1-578 LTCKFLTHKQ LSPEDSSSPV KRVLDHQNNE GASRDWQNQP FTKIRDIALC 151 200 ENSP00000376952/1-583 DTPERSAADN KDLILD-PCC QLPAYLSTCP GQSSSLAVTK TNSDILPPQK ENSBTAP00000055580/1-574 GTSERHASNN KDPVVDSPCH QLPAYQTTCS VQSNSLTITK TNAEVPLPQK ENSTTRP00000000192/1-591 DTSERCVSSN KDPVVDSPSH EPPAYPTTCS VQSNGVTVTK TSAEVPPPQK bmy_06719T0/1-587 DTSERHASNN KDPMVDSPCH QLPAYQTTCS VQSNSLTVTK TNAEVPPPQK BACU006431/1-578 DTSERHASNN EDPMVDSPCH QLPAYQTTCS VQSNSLTVTK TNAEVPPPQK 201 250 ENSP00000376952/1-583 KTKPSQKVQG RGSHGCRQQR QARQKESTLR RQER-KNAAL VTRMKAQRPE ENSBTAP00000055580/1-574 RRKYSQKVQK SSTQGCQQWG RASQKESTQR QQEGKKKAAL VNRLKAQRPE ENSTTRP00000000192/1-591 RTKHHQKVQR RGSQGRQQRG QAGRKESTQR QQERKKKAAL VNRLKAQRPE bmy_06719T0/1-587 RTKHNQKVRK RGSQGCQQRG QASQKESTQR QQERKKKAAL VNRLKAQRPE BACU006431/1-578 RTKHNQKVQK RGSQGCQQRG QASQKESTER QQERKKKAAL VNRLKAQRPE 251 300 ENSP00000376952/1-583 ECLKHIIVVL DPVLLQMEGG GQLLGALQTM ECRCVIEAQA VPCSVTWRRR ENSBTAP00000055580/1-574 ECLKHIVVLL DPVLLQMEGG GQLLGALQSM DCSCVIEAQA VPCSLTWRRK ENSTTRP00000000192/1-591 ECLKHIVVLL DPVLLQMEGG GQLLGALQSM ECCCVIEAPA VPCSITWRRR bmy_06719T0/1-587 ECLKHIAVLL DPVLLQMEGG GQLLGALQSM ECCCVIEAPA VPCSITWRRR BACU006431/1-578 ECLKHIAVLL DPVLLQMEGG GQLLGALQSM ECCCVIEAPA VPCSITWRRR 301 350 ENSP00000376952/1-583 AGPSED-RED WVEEPTVLVL LRAEAFVSMI DNGKQGSLDS TMKGKETLQG ENSBTAP00000055580/1-574 AGPSEDGEEG WVEEPMVLVL LLAEVFMSMI YHFKQGSLGS TEEGKKTLES ENSTTRP00000000192/1-591 AGSTEDGEED WVEEPMVLVL LLAEAFVSMI YNFKQGSLGS TKEGKETLRS bmy_06719T0/1-587 AGSTE----- ---------- ---------- -----GSLGS AEEGKETLRS BACU006431/1-578 AGSTEDGEEG WVEEPTILVL LLAEAFVSMI YNFKQGRLGS AEQGKETLRS 351 400 ENSP00000376952/1-583 FVTDITAKTA GKALSLVIVD QEKCFSL--- -------ELL FFDFLPCTSA ENSBTAP00000055580/1-574 FVTDITARTA GKDLSLVIVD PEKCF----- ---------- --------SA ENSTTRP00000000192/1-591 FVTDITARTA GKALSLVIVD PEKCFSL--- -------ELP LFDFLPCSRA bmy_06719T0/1-587 FVTDITARTA GKALSLVIVD LEKCFSLLTP LLPELGLELP LFDFLPCSSA BACU006431/1-578 FVTDITARTA GKALSLVIVD LEKCF----- ---------- --------SA 401 450 ENSP00000376952/1-583 QNPPRRGKQG -ANKQTKKQQ ---QRQPEAS IGSMVSRVDA EEALVDLQLH ENSBTAP00000055580/1-574 PNPLRRKQRA -ANREQAKEK KKQQKQPEAN TGAMVTRVDV EEALVDLQLH ENSTTRP00000000192/1-591 PNPPRRRKQG VANGEQAKEK EK-QRQPEAS TAAVVTRVDM EEALVDLQLH bmy_06719T0/1-587 PNPLRRRKQG VANGEQAKEK KK-QRQPEAN TAAVVTRVDM EEALVDLQLH BACU006431/1-578 PNPPRRRKQG VANGEQAKEK KK-QRQPEAN TAAVVTRVDT EEALVDLQLH 451 500 ENSP00000376952/1-583 TEAQAQIVQS WKELADFTCA FTKAVAEAPF K--------- -------KLR ENSBTAP00000055580/1-574 TEAQARIVQS WKELADLACA FTKAVAEAPF K--------- -------KLR ENSTTRP00000000192/1-591 TEAQARIVQS WKELADLACA FTKAVAEAPF K--------- -------KLR bmy_06719T0/1-587 TEAQARIVQS WKELADLACT FTKAVAEAPF KCSTVTHDSQ LNCAVCRKLR BACU006431/1-578 TEAQARIVQS WKELADLACT FTKAVAEAPF K--------- -------KLR 501 550 ENSP00000376952/1-583 DETTFSFCLE SDWAGGVKVD LAGRGLALVW RRQIQQLNRV SLEMASAVVN ENSBTAP00000055580/1-574 DQTSFSFCLE SDWAGGAKVD RSGRGLALVW RRQIQQLNRV SLEMASAIVD ENSTTRP00000000192/1-591 DQVSFSFCPE SDWAGGAKVD RSGRGLAVVW RRQIQQLNRV SLEMASAFVD bmy_06719T0/1-587 DQASFSFCLE SDWAGGAKVD RSGRGLAVVW RRQIQQLNRV SLEMASAVVD BACU006431/1-578 DQASFSFCLE SDWAGGAKVD RSGRGLAVVW RRQIQQLNRV SLEMASAVVD 551 600 ENSP00000376952/1-583 AYPSPQLLVQ AYQQCFSDKE RQNLLADIQV RRGEGVTSTS RRIGPELSRR ENSBTAP00000055580/1-574 AYPSPQLLIQ AYKRCLSEQE RQNLLADLQV RRGEGVTATL RRVGPELSRR ENSTTRP00000000192/1-591 AYPSPQLLIQ AYKRCFSEQE RQNLLADIQV RRGEGVTATS RRLGPELSRR bmy_06719T0/1-587 AYPSPQLLIQ AYKRCFSEQE RQNLLADIQV RRGEGVTATS RRLGPELSRR BACU006431/1-578 AYPSPQLLIQ AYKRCFSEQE RQNLLADIQV RRGEGVTATS RRLGPELSRR 601 650 ENSP00000376952/1-583 IYLQMTTLQP HLSLDSAD ENSBTAP00000055580/1-574 IYLQMTALQP DLSLDSAD ENSTTRP00000000192/1-591 IYLQMTALQP DLSLDSAD bmy_06719T0/1-587 IYLQMTALQP DLSLDSAD BACU006431/1-578 IYLQMTALQP DLSLDSAD