KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:48 2014 Check: 00 .. Name: ENSP00000263946/1-747 Len: 778 Check: 7149 Weight: 1.00 Name: ENSBTAP00000055583/1-716 Len: 778 Check: 2254 Weight: 1.00 Name: ENSTTRP00000014575/1-732 Len: 778 Check: 2743 Weight: 1.00 Name: bmy_21406T0/1-474 Len: 778 Check: 7348 Weight: 1.00 Name: BACU001691/1-718 Len: 778 Check: 2747 Weight: 1.00 // 1 50 ENSP00000263946/1-747 MNHSPLKTAL AYECFQDQDN STLALPSDQK MKTGTSGRQR VQEQVMMTVK ENSBTAP00000055583/1-716 MNHSPLKTAL AYECFQDQDN STLALPSDQK MKTGTSGRQR VQEQVMMTVK ENSTTRP00000014575/1-732 MNHSPLKTAL AYECFQDQDN STLALPSDLK IKTGTSGQQR VQEQVMMTVK bmy_21406T0/1-474 ---------- ---------- ---------- ---------- ---------- BACU001691/1-718 MNHSPLKTAL AYECFQFQDN STLALPSDQK IKTGTSGWQR VQEQVMMTVK 51 100 ENSP00000263946/1-747 RQKSKSSQSS TLSHSNRGSM YDGLADNYN- YGTTSRSSYY SKFQAGNGSW ENSBTAP00000055583/1-716 RQKSKSSQSS TLSHSNRGSM YDGLADSYNN YGTSSRSSFY SKFQAGSGSW ENSTTRP00000014575/1-732 RQKSKTSQSS TPSHSIRGSM YDGLADNYNS CGTTGRSGYY SKFQAGNGTW bmy_21406T0/1-474 ---------- ---------- ---------- ---------- ---------- BACU001691/1-718 RQKPKSSQSS TLSHSNRGSM YD---DNYNS CGTTSRSSYY STFQAGNGSW 101 150 ENSP00000263946/1-747 GYPIYNGTLK REPDNRRFSS YSQMENWSRH YPRGSCNTTG AGSDICFMQK ENSBTAP00000055583/1-716 GYPIYNGTLK READNRRFSS YSQMESWGRQ YPRGGCTAPG AGSDICFMQK ENSTTRP00000014575/1-732 GYPIYNGTLK READNRRFSS YSQMETWGRQ YPRSSCVPPC AGSDICFMQK bmy_21406T0/1-474 ---------- ---------- ---MESWGQQ YPRSSNPPPG AGSDICFMQK BACU001691/1-718 GYPIYNGTLK QGADNKRFSS YSQMESWGRQ YPRSS-NPPG AGSDICFMQK 151 200 ENSP00000263946/1-747 IKASRSEPDL YCDPRGTLRK GTLGSKGQKT TQNRYSFYST CSGQKAIKKC ENSBTAP00000055583/1-716 IKASRSEPDL YCDPRGTLRK GTLGGKGHKT TQNRYSFYST CSGQKAVKKY ENSTTRP00000014575/1-732 MKASRSEPDL YCDPRGTLRK GTLGSKGFKT AQNRYSIYST CSGQKGAKKY bmy_21406T0/1-474 IKASRSEPNL YCDPRGTLRK STLGSKGYKT AQNRYSIYST CSGQKGVKKY BACU001691/1-718 IKASRSEPNL YCDPRSTLRK GTLGGKGYKT PQNRYSIYST CNGQKAVKKY 201 250 ENSP00000263946/1-747 PVRPPSCASK QDPVYIPPIS CNKDLSFGHS RASSKICSED IECSGLTIPK ENSBTAP00000055583/1-716 PGRPPSCTSR QDPVCVPPTS CTKDLSFSHS RASSKICSED IECSALSLCL ENSTTRP00000014575/1-732 PVRPPSCTSK QDPVYVQPIT CTKDQSFSHS RASSKICSED VECSGLTIPK bmy_21406T0/1-474 PVRQASCISK QDPVYVQPIS CTKDQSFSHS RASSKICSED IECSGLTIPK BACU001691/1-718 PVRQASCISK QDSVYVQPTS CTKDQSFSHS RASSKICSED IECSGLTIPR 251 300 ENSP00000263946/1-747 AVQYLSSQDE KYQAIGAYYI QHTCFQDESA KQQVYQLGGI CKLVDLLRSP ENSBTAP00000055583/1-716 SVSLSVSPVV ESRAVGGLLV APCSWQAPSA GLQVYQLGGI CKLVDLLRSP ENSTTRP00000014575/1-732 AVRCLTSPDK KCQAIGAYYI QHTCFQDESA KQQVYQLGGI CKLVDLLRSS bmy_21406T0/1-474 AVQYLSSQDE KCQTIGAYYI QRTCFQDESA KQQVYQLGGI CKLVSLLRSP BACU001691/1-718 AVQYLSYQDE KCQAIGAYYI QHTCFQNEPA KQQVYQLGGI CKLVSLLRSP 301 350 ENSP00000263946/1-747 NQNVQQAAAG ALRNLVFRST TNKLETRRQN GIREAVSLLR RTGNAEIQKQ ENSBTAP00000055583/1-716 NQNVQQAAAG ALRNLVFRST TNKLETRRQN GIREAVSLLR RTGSTEIQKQ ENSTTRP00000014575/1-732 NQNVQQAAAG ALRNLVFRST TNKLETQRQS GIHEAVTLLR STSCTEIQKQ bmy_21406T0/1-474 NQNVQQAVAG ALRNLVFRST TNKLETQRQS GVREAVSLLR RTSCTDIQKQ BACU001691/1-718 NQNVQQAAAG ALRNLVFRST TNKLETQRQS GIREAVSLLR RTSCTEIQKQ 351 400 ENSP00000263946/1-747 LTGLLW---- ---------N LSSTDELKEE LIADALPVLA DRVIIPFSGW ENSBTAP00000055583/1-716 LTGGGLAAGA GVGAAGGRDR VRAGGSLRQT PLESHRPVLA -RLVVP--SW ENSTTRP00000014575/1-732 LTGLLW---- ---------N LSSTDELKKE LISEALPVLA DRVIIPFSGW bmy_21406T0/1-474 LTGLLW---- ---------N LSSTDELKEE LISDALPVLA DRVIIPFSGW BACU001691/1-718 LTGLLW---- ---------N LSSTDELKEE LISDALPILA DRVIIPFSGW 401 450 ENSP00000263946/1-747 CDGNSNMSRE VVDPEVFFNA TGCLRKRLGM RELLALVPQR ATSSRVNLSS ENSBTAP00000055583/1-716 CPT------- ---------- ----R----- ---------- ------NLSS ENSTTRP00000014575/1-732 CDGNSNVPQK AVDPEVFFNA TGCLRSAAG- ---------- ----RVNLSS bmy_21406T0/1-474 CDGNSRLPQE AVDAEVFFNA SGCLR----- ---------- ------NLSS BACU001691/1-718 CDGNSSLPQE AVDAEVFFNA SGCLR----- ---------- ------NLSS 451 500 ENSP00000263946/1-747 ADAGRQTMRN YSGLIDSLMA YVQNCVAASR CDDKSVENCM CVLHNLSYRL ENSBTAP00000055583/1-716 ADVGRQTMRN YTGLIDSLMA YVQNCVAANR CDDKSVENCM CVLHNLSYRM ENSTTRP00000014575/1-732 ADTGRQAMRN YTGLIDSLMA YIQKCVAAGR CDDKSVENCM CTLHNLCYRL bmy_21406T0/1-474 VDMGRQTMRN YTGLIDSLMA YIQNCVAASC CDDKSVENCM CILHNLSYHL BACU001691/1-718 VDTGRQTMRS YTGLIDSLMA YVQNCVAASC YDDKSVENCM CILHNLSYRL 501 550 ENSP00000263946/1-747 DAEVPTRYRQ LEYNARNAYT EKSSTGCFSN KSDKMM---- ---------- ENSBTAP00000055583/1-716 DAEVPTRYRQ LEYNARNAYT DKSSTGCFSN KSDRMT---- ---------- ENSTTRP00000014575/1-732 DTEVPTRYRQ LEHNARNAYT EKSSTGCFSS KNGRMM---- ---------- bmy_21406T0/1-474 DTEVPTPYRQ LEYNARNAYT EKSSTGCFSN KNDRMMMRGF GPSRLASCPQ BACU001691/1-718 DSEVSTPYRQ LEYDARNAYT EKSSTGCFSN KNDRMM---- ---------- 551 600 ENSP00000263946/1-747 NNNYDCPLPE EETNPKGSGW LYHSDAIRTY LNLMGKSKKD ATLEACAGAL ENSBTAP00000055583/1-716 NNNYDCPLPE EEPNPKGSSW LYHSDAVRTY LNLMGKSKKD ATLEACAGAL ENSTTRP00000014575/1-732 NDNYDCPLPE EEPNPKGSSW LYHSNAIRTY LNLMGKSKKD ATLEACAGAL bmy_21406T0/1-474 NNNYDCPLPE EEPNPKGSSW LYHSSAIRTY LNLMGKSKKD ATLEACAGAL BACU001691/1-718 NDNYNCPLPE EEPNPKGSSW LYHSNAIRTY LNLMGKSKKD ATLEACAGAL 601 650 ENSP00000263946/1-747 QNLTASKGLM SSGMSQLIGL KEKGLPQIAR LLQSGNSDVV RSGASLLSNM ENSBTAP00000055583/1-716 QNLTASKGLM SSGMSQLIGL KEKGLPHIAR LLQSGNSDVV RSGASLLSNM ENSTTRP00000014575/1-732 QNLTASKGLM SSGXXXXXXX XXXXXXXXXX XXXXXXXDVV RSGAS-MSYM bmy_21406T0/1-474 QNLTASKGLV SAP------- ---------- ---------- ---------- BACU001691/1-718 QNLTASKGLM SSSMSQLIGL KEKGLPHIAN LLQSGNSDVV RSGASLLSNM 651 700 ENSP00000263946/1-747 SRHPLLHRVM GNQVFPEVTR LLTSHTGNTS NSEDILSSAC YTVRNLMASQ ENSBTAP00000055583/1-716 SRHPALHRVM GTQVFPEVTR LLTSHTGNTS NSEDILASAC YTVRNLMASL ENSTTRP00000014575/1-732 SRHPPLHRVM GNQVFPEVTR LLSSHTGHTS NSEDILSSTC YTVRNLMASQ bmy_21406T0/1-474 --RPA----- --PLSPPAVR ---------- ---------- ---------- BACU001691/1-718 SRHPALHRVM GNQVFPEVTR LLTSHTGHTS NSEDILSSSC YTVRNLMASL 701 750 ENSP00000263946/1-747 PQLAKQYFSS SMLNNIINLC RSSASPKAAE AARLLLSDMW SSKELQGVLR ENSBTAP00000055583/1-716 PGMAKQHFSS SMVNNIINLC RSSTSPKAAE AARLLLSDMW SSRELQGLLR ENSTTRP00000014575/1-732 PAMAKQHFSS DMICNVINLC RSSTSPRAAE AARLLLADMW SSRELQGVLR bmy_21406T0/1-474 ---------- ---------A QLSASP---- ---------- ---------- BACU001691/1-718 PGMAKQHFSS GMISNVVNLC RSSASPKATE AARLLLADMR SNRELQGVLR 751 800 ENSP00000263946/1-747 Q---QGFDRN MLGTLAGANS LRNFTSRF ENSBTAP00000055583/1-716 Q---QGFDRS MLGTLAGANS LRNFTSRF ENSTTRP00000014575/1-732 Q---QGFDRS MLGTLAGASS LRNFSSRF bmy_21406T0/1-474 ---------- ---------- -------- BACU001691/1-718 QVRAHTFHPC RRGFPA---- ----PSRH