KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:51 2014 Check: 00 .. Name: ENSP00000325612/1-877 Len: 906 Check: 2178 Weight: 1.00 Name: ENSBTAP00000055629/1-832 Len: 906 Check: 2431 Weight: 1.00 Name: ENSTTRP00000001384/1-822 Len: 906 Check: 5773 Weight: 1.00 Name: bmy_06645T0/1-542 Len: 906 Check: 8885 Weight: 1.00 Name: BACU006534/1-829 Len: 906 Check: 3798 Weight: 1.00 // 1 50 ENSP00000325612/1-877 MCDLRRPAAG GMMDLAYVCE WEKWSKSTHC PSVPLACAWS CRNLIAFTMD ENSBTAP00000055629/1-832 ---------L GAMDLAYICE WEKWPKSTHC PSGPLACTWS CRNLIAFTTD ENSTTRP00000001384/1-822 -----VCDAG GTMDLAYICE WEKWPKSTHC PSVPLACTWS CRNLIAFTTD bmy_06645T0/1-542 ---------- --MDLAYICE WEKWPKSTHC PSVPLACTWS CRNLIAFTTD BACU006534/1-829 ---------- --MDLAYICE WEKWPKSTHC PSVPLACTWS CRNLIAFTTD 51 100 ENSP00000325612/1-877 LRSDDQDLTR MIHILDTEHP WDLHSIPSEH HEAITCLEWD QSGSRLLSAD ENSBTAP00000055629/1-832 LRSDDQDLTR MIHILDTEHP WDVHSIRSEH SEAITCLEWD QSGSRLLSAD ENSTTRP00000001384/1-822 LRSDDQDLTR VIHILDTEHP WDVHSICSGH SEAVTCLEWD QSGSRLLSAD bmy_06645T0/1-542 LRSDDQDLTR MIHILDTEHP WDVHSIRSEH SEAITCLEWD QSGSRLLSAD BACU006534/1-829 LRSDDQDLTR MIHILDTEHP WDVHSIRSEH SEAITCLEWD QSGSRLLSAD 101 150 ENSP00000325612/1-877 ADGQIKCWSM ADHLANSWES SVGSLVEGDP IVALSWLHNG VKLALHVEKS ENSBTAP00000055629/1-832 ADGQIKCWSM ADHLANSWES PVGSVVEGDP IVALSWLHNG VKLALHVEKS ENSTTRP00000001384/1-822 ADGQIKCWSM ADHLANSWES PVGSLVEGDP IVALSWLHNG VKLALHVEKS bmy_06645T0/1-542 ADGQIKCWSM ADHLANSWES PVGSLVEGDP IVALSWLHNG VKLALHVEKS BACU006534/1-829 ADGQIKCWSM ADHLANSWES PVGSLVEGDP IVALSWLHNG VKLALHVEKS 151 200 ENSP00000325612/1-877 GASSFGEKFS RVKFSPSLTL FGGKPMEGWI AVTVSGLVTV SLLKPSGQVL ENSBTAP00000055629/1-832 GASSFGEKFS RVKFSPSLTL FGGKPMEGWI AVTVSGLVTV SLLKPSGQVL ENSTTRP00000001384/1-822 GASSFGEKFS RVKFSPSLTL FGGKPMEGWI AVTVSGLVTV SLLKPSGQVL bmy_06645T0/1-542 GASSFGEKFS RVKFSPSLTL FGGKPMEGWI AVTVSGLVTV SLLKPSGQVL BACU006534/1-829 GASSFGEKFS RVKFSPSLTL FGGKPMEGWI AVTVSGLVTV SLLKPSGQVL 201 250 ENSP00000325612/1-877 TSTESLCRLR GRVALADIAF TGGGNIVVAT ADGSSASPVQ FYKVCVSVVS ENSBTAP00000055629/1-832 TSTESLCRLR GRVALADIAF TGGGNIVVAT ADGSSASPVQ LYKVCVSVVN ENSTTRP00000001384/1-822 TSTESLCRLR GRVALADIAF TGGGNIVVAT ADGSSASPVQ FYKVCVSVVN bmy_06645T0/1-542 TSTESLCRLR GRVALADIAF TGGGNIVVAT ADGSSASPVQ FYK------- BACU006534/1-829 TSTESLCRLR GRVALADIAF TGGGNIVVAT ADGSSASPVQ FYKVCVSVVN 251 300 ENSP00000325612/1-877 EKCRIDTEIL PSLFMRCTTD LNRKDKFPAI THLKFLARDM SEQVLLCASS ENSBTAP00000055629/1-832 EKCRIDTELL PSLFMRCTTD LSRRVELPAP GSLRYLCFPP GHHVLLCASS ENSTTRP00000001384/1-822 EKCRIDTEIL PSLFMRCTTD LNRRDRLPAI THLKFLARDM SEQVLLCASS bmy_06645T0/1-542 ---------- ---------- ---------- ---------- ---VLLCASS BACU006534/1-829 EKCRIDTEIL PSLFMRCTTD LNRRDRLPAI THLKFLARDM SEQVLLCASS 301 350 ENSP00000325612/1-877 QTSSIVECWS LRKEGLPVNN IFQQISPVVG DKQPTILKWR ILSATNDLDR ENSBTAP00000055629/1-832 QTSSVVECWS LRKEGLPVNN IFQQLSPAVG DKQPTILKWR ILSATNDLDR ENSTTRP00000001384/1-822 QTSSVVECWS LRKEGLPVNN IFQQLSPAVG DKQPTILKWR ILSATNDLDR bmy_06645T0/1-542 QTSSVVECWS LRKEGLPVNN IFQQLSPA-- ---------- ---ATNDLDR BACU006534/1-829 QTSSVVECWS LRKEGLPVNN IFQQLSPAVG DKQPTILKWR ILSATNDLDR 351 400 ENSP00000325612/1-877 VSAVALPKLP ISLTNTDLKV ASDTQFYPGL ---------- ---------- ENSBTAP00000055629/1-832 VSAVALPKLP ISLTNTDLKV ASDTQFYPGL ---------- ---------- ENSTTRP00000001384/1-822 VSAVALPKLP ISLTNTDLKV ASDTQFYPGL ---------- ---------- bmy_06645T0/1-542 VSAVALPKLP ISLTNTDLKV ASDTQFYPGL VPHVEILGLV PGVCDPGAGF BACU006534/1-829 VSAVALPKLP ISLTNTDLKV ASDTQFYPGL ---------- ---------- 401 450 ENSP00000325612/1-877 ---------G LALAFHDGSV HIVHRLSLQT MAVFYSSAAP RPVDEPAMKR ENSBTAP00000055629/1-832 ---------G LALAFHDGSV HIVHRLSLQT MAIFYSSAAP RPIDEPALKR ENSTTRP00000001384/1-822 ---------G LALAFHDGSV HIVHRLSLQT MAIFYSSAAP RSVDEPAIKR bmy_06645T0/1-542 GRLTLHVPPG LALAFHDGSV HIVHRLSLQT MAIFYSSAAP RSVDEPAIKR BACU006534/1-829 ---------G LALAFHDGSV HIVHRLSLQT MAIFYSSAAP RSVDEPAIKR 451 500 ENSP00000325612/1-877 PRTAGPAVHL KAMQLSWTSL ALVGIDSHGK LSVLRLSPSM GHPLEVGLAL ENSBTAP00000055629/1-832 PRTTGPAVHF KAMQLSWTSL ALVGIDNHGR LSMLRISPSM GHSLDVGLAL ENSTTRP00000001384/1-822 PRTTGPAVHF KAMQLSWTSL ALVGIDNHGR LSMLRISPSM GHSLDAGLAL bmy_06645T0/1-542 PRTTGPAVHF KAMQLSWTSL ALVGIDNHGR LSMLRISPSM GHSLDAGLAL BACU006534/1-829 PRTTGPAVHF KAMQLSWTSL ALVGIDNHGR LSMLRISPSM GHSLDAGLAL 501 550 ENSP00000325612/1-877 RHLLFLLEYC MVTGYDWWDI LLHVQPSMVQ SLVEKLHEEY TRQTAALQQV ENSBTAP00000055629/1-832 RHLLFLLEYC MVTGYDWWDI LLHVQPGMVQ SLVEKLHEEY TRQKAELQQV ENSTTRP00000001384/1-822 RHLLFLLEYC MVTGYDWWDI LLHVQPSMVQ SLVEKLHEEY TRQKAELQQV bmy_06645T0/1-542 RHLLFLLEYC MVTGYDWWDI LLHVQPSMVQ SLVEKLHEEY TRQKAELQQV BACU006534/1-829 RHLLFLLEYC MVTGYDWWDI LLHVQPNMVQ SLVEKLHEEY TRQKAELQQV 551 600 ENSP00000325612/1-877 LSTRILAMKA SLCKLSPCTV TRVCDYHTKL FLIAISSTLK SLLRPHFLNT ENSBTAP00000055629/1-832 LSTRILAMKA SLCKLSPCTV TRVCDYHAKL FLIAISSTLK SLLRPHVLNT ENSTTRP00000001384/1-822 LSTRILAMKA SLCKLSPCAV TRVCEYHAKL FLIAASSTLK SLLRPHVLNT bmy_06645T0/1-542 LSTRILAMKA SLCKLSPCAV TRVCEYHAKL FLIAASSTLK SLLRPHVLNT BACU006534/1-829 LSTRILAMKA SLCKLSPCAV TRVCEYHAKL FLIAASSTLK SLLRPHVLNT 601 650 ENSP00000325612/1-877 PDKSPGDRLT EICTKITDVD IDKVMINLKT EEFVLDMNTL QALQQLLQWV ENSBTAP00000055629/1-832 PDKSPGDRLT EICAKITDVD IDKVMINLKT EEFVLDMNTL QALQQLLQWV ENSTTRP00000001384/1-822 PDKSPGDRLT EVCAKITDVD IDKVMINLKT EEFVLDMNTL QALQQLLQWV bmy_06645T0/1-542 PDKSPGDRLT EICAKITDV- ---------- ---------- ---------- BACU006534/1-829 PDKSPGDRLT EICAKITDVD IDKVMINLKT EEFVLDMNTL QALQQLLQWV 651 700 ENSP00000325612/1-877 GDFVLYLLAS LPNQGSLLRP GHSFLRDGTS LGMLRELMVV IRIWGLLKPS ENSBTAP00000055629/1-832 GDFVLYLLAS LPNQGSPLRP GHSFLRDGTS LGMLRELMVV IRIWGLLKPS ENSTTRP00000001384/1-822 GDFVLYLLAS LPNQGSPLRP GHSFLRDGAS LGVLRELMVV IRIWGLLKPS bmy_06645T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU006534/1-829 GDFVLYLLAS LPNQGSPLRP GHSFLRDGMS LGLLRELMVV IRIWGLLKPG 701 750 ENSP00000325612/1-877 CLPVYTATSD TQDSMSLLFR LLTKLWICCR DEGPASEPDE ALVDECCLLP ENSBTAP00000055629/1-832 CLPVYTATSD TQDSMSLLFR LLTKLWICCR DEGPTSEPDE ALVDECCLLP ENSTTRP00000001384/1-822 CLPVYTATSD TQDSMSLLFR LLTKLWICCR DEGPTSEPDE ALVDECCLLP bmy_06645T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU006534/1-829 CLPVYTATSD TQDSMSLLFR LLTKLWICCR DEGPTSEPDE ALVDECCLLP 751 800 ENSP00000325612/1-877 SQLLIPSLDW LPASDGLVSR LQPKQPLRLQ FGRAPTLPGS AATLQLDGLA ENSBTAP00000055629/1-832 SQLLIPSLDW LPVSDGLVSR LQPKQPLRLH FGKAPALPGS STGLQLDGLI ENSTTRP00000001384/1-822 SQLLIPSLDW LPVSDGLVSR LQPKQPLRLH FGKPPALPGS ATSLQLDGLI bmy_06645T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU006534/1-829 SQLLIPSLDW LPVSDGLVSR LQPKQPLRLH FGKPPALPGS ATSLQLDGLI 801 850 ENSP00000325612/1-877 RAPGQPKIDH LRRLHLGACP TEECKACTRC GCVTMLKSPN RTTAVKQWEQ ENSBTAP00000055629/1-832 RAPGQPKMDH LRRLHLGAYP TEACKACTRC GCVTMLKSPN KTTAVKQWEQ ENSTTRP00000001384/1-822 RAPGQPKMDH LRRLHLGAYP TEACKACTRC GCVTMLKSPN KTTAVKQWEQ bmy_06645T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU006534/1-829 RVPGQPKMDH LRRLHLGAYP TEACKACTRC GCVTMLKSPN KTTAVKQWEQ 851 900 ENSP00000325612/1-877 RWIKNCLAVE GRGPDACVTS RASEEAPAFV QLGPQSTHHS PRTPRSLDHL ENSBTAP00000055629/1-832 RWIKNCLC-- ---------- ---------- ---------- ----GGLWWR ENSTTRP00000001384/1-822 RWIKNC---- ---------- ---------- ---------- ---------- bmy_06645T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU006534/1-829 RWIKNCLC-- ---------- ---------- ---------- ----GGLWWR 901 950 ENSP00000325612/1-877 HPEDRP ENSBTAP00000055629/1-832 MPLSYP ENSTTRP00000001384/1-822 ------ bmy_06645T0/1-542 ------ BACU006534/1-829 MPLSYP