KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:52 2014 Check: 00 .. Name: ENSBTAP00000055648/1-634 Len: 692 Check: 8999 Weight: 1.00 Name: ENSP00000305302/1-634 Len: 692 Check: 9549 Weight: 1.00 Name: ENSTTRP00000003569/1-565 Len: 692 Check: 9959 Weight: 1.00 Name: bmy_05113T0/1-656 Len: 692 Check: 4595 Weight: 1.00 Name: BACU014730/1-669 Len: 692 Check: 7774 Weight: 1.00 // 1 50 ENSBTAP00000055648/1-634 MVRLALPNPG LEARIPSLGE LERVEREESS SRPTWDNKAQ YMLTCVGFCV ENSP00000305302/1-634 MVRLVLPNPG LDARIPSLAE LETIEQEEAS SRPKWDNKAQ YMLTCLGFCV ENSTTRP00000003569/1-565 ---------- ---------- ---------- ---------- ---------- bmy_05113T0/1-656 MVRLVLPNPG LEARIPTLGE LESLEKQESG SRPQWDNKAQ YMLTCVGFCV BACU014730/1-669 MVRLVLPNPG LEARIPTLGE LESLEKQESG SRPQWDNKAQ YMLTCVGFCV 51 100 ENSBTAP00000055648/1-634 GLGNVWRFRP VLCGA-GGSV PRVSRDGLLG VEGGPLGSQP MSVGASMPRL ENSP00000305302/1-634 GLGNVWRF-P YLCQSHGGGA FMIPFLILLV LEGIPLLYLE FAIGQRLRRG ENSTTRP00000003569/1-565 ---------- ---------A FMIPFLILLV LEGIPLLHLE FAIGQRLRKG bmy_05113T0/1-656 GLGNVWRF-P YLCQSHGGGA FMIPFLILLV LEGIPLLHLE FAIGQRLRKG BACU014730/1-669 GLGNVWRF-P YLCQSHGGGA FMIPFLILLV LEGIPLLHLE FAIGQRLRKG 101 150 ENSBTAP00000055648/1-634 SLGSGLAAHA ALSSLCIASM FVSFMVGLYY NTIIAWVMWY FFNSFQEPLP ENSP00000305302/1-634 SLGVWSSIHP ALKGLGLASM LTSFMVGLYY NTIISWIMWY LFNSFQEPLP ENSTTRP00000003569/1-565 SVGVWSSIHP ALKGVGIASM FVSFMVGLYY NTIIAWVMWY FFNSFQDPLP bmy_05113T0/1-656 SVGVWSSIHP ALKGVGIASM FVSFMVGLYY NTIIAWVMWY FFNSFQDPLP BACU014730/1-669 SVGVWSSIHP ALKGVGIASM FVSFMVGLYY NTIIAWVMWY FFNSFQDPLP 151 200 ENSBTAP00000055648/1-634 WSQCPLNANQ TGYVDECARS SSVDYFWYRE TLNVSTSIDD SGSVQWWILL ENSP00000305302/1-634 WSDCPLNENQ TGYVDECARS SPVDYFWYRE TLNISTSISD SGSIQWWMLL ENSTTRP00000003569/1-565 WSQCPLNANQ TGYVEECARS SSVDYYWYRE TLNVSTSIDD SGSVQWWILL bmy_05113T0/1-656 WSQCPLNANQ TGYVEECARS SSVDYYWYRE TLNISTSIDD SGSVQWWVLL BACU014730/1-669 WSQCPLNANQ TGYVEECARS SSVDYYWYRE TLNISTSIDD SGSVQWWILL 201 250 ENSBTAP00000055648/1-634 ALTCAWSVLY VCTIRGIETT GKAVYITSTL PYVVLTIFLI RGLTLKGATN ENSP00000305302/1-634 CLACAWSVLY MCTIRGIETT GKAVYITSTL PYVVLTIFLI RGLTLKGATN ENSTTRP00000003569/1-565 CLTCAWSVLY VCTIRGIETT GKAVYVTSTL PYVVLTIFLI RGLTLKGASS bmy_05113T0/1-656 SLTCAWSVLY VCTIRGIETT GKAVYITSTL PYVVLTIFLI RGLTLKGASS BACU014730/1-669 SLTCAWSVLY VCTIRGIETT GKAVYITSTL PYVVLTIFLI RGLTLKGASS 251 300 ENSBTAP00000055648/1-634 GIVFLFTPNV TELANPVTWL DAGAQVFYSF SLAFGGLISF SSYNPVH--- ENSP00000305302/1-634 GIVFLFTPNV TELAQPDTWL DAGAQVFFSF SLAFGGLISF SSYNSVH--- ENSTTRP00000003569/1-565 GIIFLFTPNV TELANPVTWL DAGAQVFYSF SLAFGGLISF SSYNSVH--- bmy_05113T0/1-656 GIVFLFTPNV TELANPVTWL DAGAQVFYSF SLAFGGLISF SSYNSVHTGW BACU014730/1-669 GIVFLFTPNV TELANPVTWL DAGAQVFYSF SLAFGGLISF SSYNSVH--- 301 350 ENSBTAP00000055648/1-634 ---------- ---------N NCEMDSVIVS VINGFTSVYA ATVVYSIIGF ENSP00000305302/1-634 ---------- ---------N NCEKDSVIVS IINGFTSVYV AIVVYSVIGF ENSTTRP00000003569/1-565 ---------- ---------N NCEMDSVIVS VINGFTSVYA ATVVYSIIGF bmy_05113T0/1-656 SGVHSVPGPV VTEAAFVRSN NCEMDSVIVS VINGFTSVYA ATVVYSIIGF BACU014730/1-669 ---------- ---------N NCEMDSVIVS VINGFTSVYA ATVVYSIIGF 351 400 ENSBTAP00000055648/1-634 RATERYDDCF STNILTLING FDLPEGNVTQ ENFAEMQRWC NASDPAAYAR ENSP00000305302/1-634 RATQRYDDCF STNILTLING FDLPEGNVTQ ENFVDMQQRC NASDPAAYAQ ENSTTRP00000003569/1-565 RATERFDDCF SANILTLING FDLPEGNVTQ ENFAEMQQWC NASNPAAYAE bmy_05113T0/1-656 RATERFDDCF SANILTLING FDLPEGNVTQ ENFAEMQRWC NASNPAAYAE BACU014730/1-669 RATERFDDCF SANILTLING FDLPEGNVTQ ENFAEMQRWC NASNPAAYAE 401 450 ENSBTAP00000055648/1-634 LKFQTCDMDA FLSQGVEGTG LAFIVFTEAI TKMPVAPLWS VLFFVMLFCL ENSP00000305302/1-634 LVFQTCDINA FLSEAVEGTG LAFIVFTEAI TKMPLSPLWS VLFFIMLFCL ENSTTRP00000003569/1-565 LKFQTCDMNT FLSEGVEGTG LAFIVFTEAI TRMPAAPLWS VLFFVMLFCL bmy_05113T0/1-656 LKFQTCDMNT FLSEGVEGTG LAFIVFTEAI TKMPVAPLWS VLFFIMLFCL BACU014730/1-669 LKFQTCDMNT FLSEGVEGTG LAFIVFTEAI TKMPVAPLWS VLFFIMLFCL 451 500 ENSBTAP00000055648/1-634 GLSSMFGNME GVVVPLQDLK VIPKKWPKEL LTGLICLGMY LIAFIFTLNS ENSP00000305302/1-634 GLSSMFGNME GVVVPLQDLR VIPPKWPKEV LTGLICLGTF LIGFIFTLNS ENSTTRP00000003569/1-565 GLSSMFGNME GVVVPLQDLN VIPKKWPKEL LTGLICLGTY LLALVFTLNS bmy_05113T0/1-656 GLSSMFGNME GVVVPLQDLK VIPKNWPKEL LTGLICLGMY LIAFVFTLNS BACU014730/1-669 GLSSMFGNME GVVVPLQDLK VIPKNWPKEL LTGLICLGMY LIAFVFTLNS 501 550 ENSBTAP00000055648/1-634 GQYWLSLLDS YAGSIPLLVI AFFEMFSVVY VYGVDR---- ---------- ENSP00000305302/1-634 GQYWLSLLDS YAGSIPLLII AFCEMFSVVY VYGVDR---- ---------- ENSTTRP00000003569/1-565 GQYWLSLLDR YAGSIPLLV- AFFEMFSXXX XXXXXX---- ---------- bmy_05113T0/1-656 GQYWLSLLDS YAGSIPLLII AFFEMFSVVY VYGVDR---- ---------- BACU014730/1-669 GQYWLSLLDS YAGSIPLLII AFFEMFSVVY VYGIDRALDS SRLRSAHFVL 551 600 ENSBTAP00000055648/1-634 ---------- ---------- -FNRDIEFMI GHKPNIFWQV TWRVVSPLLM ENSP00000305302/1-634 ---------- ---------- -FNKDIEFMI GHKPNIFWQV TWRVVSPLLM ENSTTRP00000003569/1-565 ---------- ---------- -FNRDIEFMI GHKPSIFWQV TWRVVSPLLM bmy_05113T0/1-656 ---------- ---------- -FNRDIEFMI GHKPNIFWQV TWRVVSPLIM BACU014730/1-669 ISADDKRICA EGHWAQDGGR WFNRDIEFMI GHKPNIFWQV TWRVVSPLLM 601 650 ENSBTAP00000055648/1-634 LAIFLFFFVI EVREELTYNI WDPAYEEFPK SKEIKYPGWV YAVVVLVAGV ENSP00000305302/1-634 LIIFLFFFVV EVSQELTYSI WDPGYEEFPK SQKISYPNWV YVVVVIVAGV ENSTTRP00000003569/1-565 LTIFLFFLVI SVNEELVYSV WNPAYEEFPK SQKVKYPNWV YGVVVVVAGV bmy_05113T0/1-656 LTIFLFFFVI KVNEELIYSV WNPAYEEFPK SQKVKYPNWV YGVVVIVAGV BACU014730/1-669 LTIFLFFFVI KVNEELIYSV WNPAYEEFPK SQKFKYPNWV YGVVVIVAGV 651 700 ENSBTAP00000055648/1-634 PCLVIPGFAI YKLIRNHFQR RGDQRALVSS LSAASVNGGL WS ENSP00000305302/1-634 PSLTIPGYAI YKLIRNHCQK PGDHQGLVST LSTASMNGDL KY ENSTTRP00000003569/1-565 PCLAIPGFAI YKLIRNRFRR AGDQQGLVGA QSTVSVNGDV RS bmy_05113T0/1-656 PCLVIPGFAI YKLIRNRFQR AGDRQGLVGT LSTVSLNGDL KS BACU014730/1-669 PCLVIPGFAI YKLIRNRFQR AGDRQGLVGA PSTVSVNGDL KY