KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:53 2014 Check: 00 .. Name: ENSTTRP00000003282/1-835 Len: 845 Check: 2740 Weight: 1.00 Name: ENSP00000369071/1-836 Len: 845 Check: 6029 Weight: 1.00 Name: ENSBTAP00000055657/1-836 Len: 845 Check: 7358 Weight: 1.00 Name: bmy_17233T0/1-792 Len: 845 Check: 4597 Weight: 1.00 Name: BACU015767/1-811 Len: 845 Check: 7198 Weight: 1.00 // 1 50 ENSTTRP00000003282/1-835 MIPLLSIFSL FLLVVVNPAN ANGHYDKILA HSRIRGRDQG PNVCALQQIL ENSP00000369071/1-836 MIPFLPMFSL LLLLIVNPIN ANNHYDKILA HSRIRGRDQG PNVCALQQIL ENSBTAP00000055657/1-836 MIPFLPVCSL FLLLVVNPAN ANGHYDKILA HSRIRGRDQG PNVCALQQIL bmy_17233T0/1-792 MIPLLPIFSL FLLVVVNPAN ANGHYDKILA HSRIRGRDQG PNVCALQQIL BACU015767/1-811 MIPLLPIFSL FLLVVVNPAN ANGHYDKILA HSRIRGRDQG PNVCALQQIL 51 100 ENSTTRP00000003282/1-835 GTKRKYFSTC RNWYQGAICG KKTTVLYECC PGYMRMEGMK GCPAVMPIDH ENSP00000369071/1-836 GTKKKYFSTC KNWYKKSICG QKTTVLYECC PGYMRMEGMK GCPAVLPIDH ENSBTAP00000055657/1-836 GTKKKYLSTC RNWYQGAICG KKTTVLYECC PGYMRMEGMK GCPAVMPIDH bmy_17233T0/1-792 GTKRKYFSTC RNWYQGAICG KKTTVLYECC PGYMRMEGMK GCPAVMPIDH BACU015767/1-811 GTKKKYFSTC RNWYQGAICG KKTTVLYECC PGYMRMEGMK GCPAVMPIDH 101 150 ENSTTRP00000003282/1-835 VYGTLGIVGA TTTQRYSDVS KLREEIEGKG SFTYFAPSNE AWDNLDSDIR ENSP00000369071/1-836 VYGTLGIVGA TTTQRYSDAS KLREEIEGKG SFTYFAPSNE AWDNLDSDIR ENSBTAP00000055657/1-836 VYGTLGIVGA TTTQSYSDVS KLREEIEGKG SFTYFAPSNE AWDNLDSDIR bmy_17233T0/1-792 VYGTLGIVGA TTTQRYSDVS KLREEIEGKG SFTYFAPSNE AWDNLDSDIR BACU015767/1-811 VYGTLGIVGA TTTQRYSDLS KLREEIEGKG SFTYFAPSNE AWDNLDSDIR 151 200 ENSTTRP00000003282/1-835 RGLESNVNVE LLNALHSHMI NKRMLTKDXX X-XXXXXXXX XXXXXXXXXX ENSP00000369071/1-836 RGLESNVNVE LLNALHSHMI NKRMLTKDLK NGMIIPSMYN NLGLFINHYP ENSBTAP00000055657/1-836 RGLESNVNVE LLNALHSHMV NKRMLTKDLK NGMIIPSMYN NLGLFINHYP bmy_17233T0/1-792 RGLESNVNVE LLNALHSHMV NKRMLTKDLK NGMIISSMYN NLGLFINHYP BACU015767/1-811 RGLESNVNVE LLNALHSHMV NKRMLTKDLK NGMIVSSMYN NLGLFINHYP 201 250 ENSTTRP00000003282/1-835 XXVVTVNCAR IIHGNQIATN GVVHVIDRVL TQIGTSIQDF IEAEDDLSSF ENSP00000369071/1-836 NGVVTVNCAR IIHGNQIATN GVVHVIDRVL TQIGTSIQDF IEAEDDLSSF ENSBTAP00000055657/1-836 NGVVTVNCAR IIHGNQIATN GVVHVIDRVL TQIGTSIQDF IEAEDELSSF bmy_17233T0/1-792 NGVVTVNCAR IIHGNQIATN GVVHVIDRVL TQIGTSIQDF IEAEDDLSSF BACU015767/1-811 NGVVTVNCAR IIHGNQIATN GVVHVIDRVL TQIGTSIQDF IEAEDDLSSF 251 300 ENSTTRP00000003282/1-835 RAAAITSDIL ESLGRDGHFT LFAPTNEAFE KLPRGVLERI MGDKVASEAL ENSP00000369071/1-836 RAAAITSDIL EALGRDGHFT LFAPTNEAFE KLPRGVLERI MGDKVASEAL ENSBTAP00000055657/1-836 RAAAITSDIL ETLGRDGHFT LFAPTNEAFE KLPRGVLERI MGDKVASEAL bmy_17233T0/1-792 RAAAITSDVL EALGRDGHFT LFAPTNEAFE KLPRGVLERI MGDKVASEAL BACU015767/1-811 RAAAITSDVL EALGRDGHFT LFAPTNEAFE RLPRGVLERI MGDKVASEAL 301 350 ENSTTRP00000003282/1-835 LKYHILNTLQ CSEAIMGGAV FETLEGNTIE IGCDGDSITV NGIKMVNKKD ENSP00000369071/1-836 MKYHILNTLQ CSESIMGGAV FETLEGNTIE IGCDGDSITV NGIKMVNKKD ENSBTAP00000055657/1-836 MKYHILNTLQ CSEAIMGGAV FETLEGNTIE IGCDGDSITV NGIKMVNKKD bmy_17233T0/1-792 LKYHILNTLQ CSEAIMGGAV FETLEGNTIE IGCDGDSITV NGIKMVNKKD BACU015767/1-811 LKYHILNTLQ CSEAIMGGAV FETLEGNTIE IGCDGDSITV NGIKMVNKKD 351 400 ENSTTRP00000003282/1-835 IVTNNGVIHL IDQVLIPDSA KQVIELAGNQ QTTFTDLVAQ LGLASALRPD ENSP00000369071/1-836 IVTNNGVIHL IDQVLIPDSA KQVIELAGKQ QTTFTDLVAQ LGLASALRPD ENSBTAP00000055657/1-836 IVTNNGVIHL IDQVLVPDSA KQVIELAGNQ QTTFTDLVAQ LGLASALRPD bmy_17233T0/1-792 IVTNNGVIHL IDRVLIPDSA KQVIELAGNQ QTTFTDLVAQ LGLASALRPD BACU015767/1-811 IVTNNGVIHL IDQVLIPDSA KQVIELAGNQ QTTFTDLVAQ LGLASALRPD 401 450 ENSTTRP00000003282/1-835 GEYTLLAPVN NAFSDDTLSM DQRLLKLILQ NHILKVKVGL NELYNGQKLE ENSP00000369071/1-836 GEYTLLAPVN NAFSDDTLSM DQRLLKLILQ NHILKVKVGL NELYNGQILE ENSBTAP00000055657/1-836 GEYTLLAPVN NAFSDDTLSM DQRLLKLILQ NHILKVKIGL NELYNGQKLE bmy_17233T0/1-792 GEYTLLAPVN NAFSDDTLSM DQRLLKLILQ NHILKVKVGL NELYNGQKLE BACU015767/1-811 GEYTLLAPVN NAFSDDTLSM DQRLLKLILQ NHILKVKVGL NELYNGQKLE 451 500 ENSTTRP00000003282/1-835 TIGGKQLRVF VYRTAVCIEN SCMVRGSKQG RNGAIHIFQE IIKPAEKSLH ENSP00000369071/1-836 TIGGKQLRVF VYRTAVCIEN SCMEKGSKQG RNGAIHIFRE IIKPAEKSLH ENSBTAP00000055657/1-836 TIGGKQLRVF VYRTAVCIEN SCMVRGSKQG RNGAIHIFQE IIKPAEKSLH bmy_17233T0/1-792 TIGGKQLRVF VYRTAVCIEN SCMVRGSKQG RNGAIHIFRE IIKPAEKSLH BACU015767/1-811 TIGGKQLRVF VYRTAVCIEN SCMVRGSKQG RNGAIHIFRE IIKPAEKSLH 501 550 ENSTTRP00000003282/1-835 EKLKQDKRFS IFLSLLEAAD LKELLTQPGD WTLFVPTNDA FKGMTKDEKE ENSP00000369071/1-836 EKLKQDKRFS TFLSLLEAAD LKELLTQPGD WTLFVPTNDA FKGMTSEEKE ENSBTAP00000055657/1-836 EKLKQDKRFS IFLSLLEAAD LKELLTQPGD WTLFVPTNDA FKGMTNEEKE bmy_17233T0/1-792 EKLKQDKRFS IFLSLLEAAD LKELLTQPGD WTLFVPTNDA FKGMTNEEKE BACU015767/1-811 EKLKQDKRFS TFLSLLEAAD LKELLTQPGD WTLFVPTNDA FKGMTNEEKE 551 600 ENSTTRP00000003282/1-835 ILIRNKNALQ NIILYHLTPG VFIGKGFEPG VTNILKTTQG SKIFLKGVND ENSP00000369071/1-836 ILIRDKNALQ NIILYHLTPG VFIGKGFEPG VTNILKTTQG SKIFLKEVND ENSBTAP00000055657/1-836 ILIRDKNALQ NIILYHLTPG VFIGKGFEPG VTNILKTTQG SKIYLKGVND bmy_17233T0/1-792 ILIRDKNALQ NIILYHLTPG VFIGKGFEPG VTNILKTTQG SKIYLKGVND BACU015767/1-811 ILIRDKNALQ NIILYHLTPG VFIGKGFEPG VTNILKTTQG SKIYLKGVND 601 650 ENSTTRP00000003282/1-835 TLLVNELKSK ESDIMTTNGV IHVVDKLLYP ADTPVGNDQL LEILNKLIKY ENSP00000369071/1-836 TLLVNELKSK ESDIMTTNGV IHVVDKLLYP ADTPVGNDQL LEILNKLIKY ENSBTAP00000055657/1-836 TLLVNELKSK ESDIMTTNGV IHVVDKLLYP ADTPVGNDQL LEILNKLIKY bmy_17233T0/1-792 TLLVNELKSK ESDIMTTNGV IHVVDKLLYP ADTPVGNDQL LEILNKLIKY BACU015767/1-811 TLLVNELKSK ESDIMTTNGV IHVVDKLLYP ADTPVGNDQL LEILNKLIKY 651 700 ENSTTRP00000003282/1-835 IQIKFVRGST FKEIPITVYT TKIITKVVEP KIKVIEGSLQ PIIKTEGPTI ENSP00000369071/1-836 IQIKFVRGST FKEIPVTVYT TKIITKVVEP KIKVIEGSLQ PIIKTEGPTL ENSBTAP00000055657/1-836 IQIKFVRGST FKEIPITVYT TKIITKVVEP KIKVIEGSLQ PIIKTEGRTI bmy_17233T0/1-792 IQIKFVRGST FKEIPITVYR ---------- ---------- -------PTI BACU015767/1-811 IQIKFVRGST FKEIPITVYT TKIITKVVEP KIKVIEGSLQ PIIKTEGPTI 701 750 ENSTTRP00000003282/1-835 TKVKIEGEPE FRLIKEGETV TEVIHGEPII KKYTKIIDGV PVEITEKETR ENSP00000369071/1-836 TKVKIEGEPE FRLIKEGETI TEVIHGEPII KKYTKIIDGV PVEITEKETR ENSBTAP00000055657/1-836 PKVKIEGEPE FRLIKEGETV TEVIHGEPII KKYTKIIDGV PVEITEKETR bmy_17233T0/1-792 TKVKIEGEPE FRLIKEGETV TEVIHGEPII KKYTKIIDGV PVEITEKETR BACU015767/1-811 TKVKIEGEPE FRLIKEGETV TEVIHGEPII KKYTKIIDGV PVEITEKETR 751 800 ENSTTRP00000003282/1-835 EERIITGPEI KYTRISTSGG EADETLKKLL QEEVTKVTKF IEGGDGHLFE ENSP00000369071/1-836 EERIITGPEI KYTRISTGGG ETEETLKKLL QEEVTKVTKF IEGGDGHLFE ENSBTAP00000055657/1-836 EERIITGPEI KYTRISTTGG ETEETLKKLL QEEVTKVTKF IEGGDGHLFE bmy_17233T0/1-792 EERIIT---- ---------- ---------- --EVTKVTKF IEGGDGHLFE BACU015767/1-811 EERIITGPEI KYTRISTSGG ETEETLKKLL QEEVTKVTKF IEGGDGHLFE 801 850 ENSTTRP00000003282/1-835 DEEIKRLLQG XXXXXXXXXX XXXXXSRRRS R-------ED RPQ-- ENSP00000369071/1-836 DEEIKRLLQG DTPVRKLQAN KKVQGSRRRL R-------EG RSQ-- ENSBTAP00000055657/1-836 DEEIKRLLQG DTPVRKIQAN KRVQASRRRS R-------ED RPQ-- bmy_17233T0/1-792 DEEIKRLLQG DTPVRKIQAN KRIQGTPSKY ERMYGDDYEG RSKDK BACU015767/1-811 DEEIKRLLQG G--------- ---------- ---------- -----