KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:26:57 2014 Check: 00 .. Name: ENSTTRP00000010996/1-1122 Len: 1137 Check: 6108 Weight: 1.00 Name: bmy_08710T0/1-714 Len: 1137 Check: 3389 Weight: 1.00 Name: BACU010719/1-1108 Len: 1137 Check: 5905 Weight: 1.00 Name: ENSP00000335615/1-1132 Len: 1137 Check: 72 Weight: 1.00 Name: ENSBTAP00000055665/1-1125 Len: 1137 Check: 3085 Weight: 1.00 // 1 50 ENSTTRP00000010996/1-1122 MGANASNYPH SCSPRVGGNS QAQQTFIGTS SYSQQGYGCE SKLYSLDHGH bmy_08710T0/1-714 ---------- ---------- ---------- ---------- ---------- BACU010719/1-1108 ---------- ---------- MAPFTVTGTS SYSQQGYGCE SKLYSLDHGH ENSP00000335615/1-1132 MGANASNYPH SCSPRVGGNS QAQQTFIGTS SYSQQGYGCE SKLYSLDHGH ENSBTAP00000055665/1-1125 MGANASSYPH SCSPRVGGNP QAQQTFIGTS SYSQQGYGCE SKLYSLDHGH 51 100 ENSTTRP00000010996/1-1122 EKPQDKKKRT SGLATLKKKF IKRRKSNRSA DHAKQMRELL SGWDVRDVNA bmy_08710T0/1-714 ---------- ---------- ---------- ---------- ---------- BACU010719/1-1108 EKPQDKKKRT SGLATLKKKF IKRRKSNRSA DHAKQMRELL SGWDVRDVNA ENSP00000335615/1-1132 EKPQDKKKRT SGLATLKKKF IKRRKSNRSA DHAKQMRELL SGWDVRDVNA ENSBTAP00000055665/1-1125 EKPQDKKKRT SGLATLKKKF IKRRKSNRSA DHAKQMRELL SGWDVRDVNA 101 150 ENSTTRP00000010996/1-1122 LVEEYEGTSA LKELSLQASL ARPEARTLQK DMADLYEYKY CTDVDLIFQE bmy_08710T0/1-714 ---------- ---------- ---------- ---------- ---------- BACU010719/1-1108 LVEEYEGTSA LKELSLQASL ARPEARTLQK DMADLYEYKY CTDVDLIFQE ENSP00000335615/1-1132 LVEEYEGTSA LKELSLQASL ARPEARTLQK DMADLYEYKY CTDVDLIFQE ENSBTAP00000055665/1-1125 LVEEYEGTSA LKELSLQASV ARPEARTLQK DMADLYEYKY CTDVDLIFQE 151 200 ENSTTRP00000010996/1-1122 TCFPVHRAIL AARCPFFKTL LSSSPEYGAE IIMDISTAGI DMPMFSALLH bmy_08710T0/1-714 ---------- ---------- ---------- ---------- ---------- BACU010719/1-1108 TCFPVHRAIL AARCPFFKTL LSSSPEYGAE IIMDISTAGI DMPMFSALLH ENSP00000335615/1-1132 TCFPVHRAIL AARCPFFKTL LSSSPEYGAE IIMDINTAGI DMPMFSALLH ENSBTAP00000055665/1-1125 TCFPVHRAIL AARCPFFKTL LSSSPEYGAE IIMDINTAGI DMPMFSALLH 201 250 ENSTTRP00000010996/1-1122 YLYTGEFGME DSRFQNVDIL VQLSEEFGTP NSLDVDMRGL FDYMCYYDVV bmy_08710T0/1-714 ---------- ---------- ---------- ---------- ---------- BACU010719/1-1108 YLYTGEFGME DSRFQNVDIL VQLSEEFGTP NSLDVDMRGL FDYMCYYDVV ENSP00000335615/1-1132 YLYTGEFGME DSRFQNVDIL VQLSEEFGTP NSLDVDMRGL FDYMCYYDVV ENSBTAP00000055665/1-1125 YLYTGEFGME DSRFQNVDIL VQLREEFGTP NSLDVDMRGL FDYMCYYDVV 251 300 ENSTTRP00000010996/1-1122 LSFSSDSELV EAFGGNQNCL DEELKAHKAI ISARSPFFRN LLQRRIRTGE bmy_08710T0/1-714 ---------- ---------- ---------- ---------- ---------- BACU010719/1-1108 LSFSSDSELV EAFGGNQNCL DEELKAHKAI ISARSPFFRN LLQRRIRTGE ENSP00000335615/1-1132 LSFSSDSELV EAFGGNQNCL DEELKAHKAV ISARSPFFRN LLQRRIRTGE ENSBTAP00000055665/1-1125 LSFSSDSELV EAFGGNQNCL DEELKAHKAI ISARSPFFRN LLQRRIRTGE 301 350 ENSTTRP00000010996/1-1122 EITDRTLRTP TRIILDESII PKKYAKVILH CMYTDVVDLS VLHCSPSVGS bmy_08710T0/1-714 ---------- ---------- ---------- ---------- ---------- BACU010719/1-1108 EITDRTLRTP TRIILDESII PKKYAKVILH CMYTDVVDLS VLHCSPSVGS ENSP00000335615/1-1132 EITDRTLRTP TRIILDESII PKKYATVILH CMYTDVVDLS VLHCSPSVGS ENSBTAP00000055665/1-1125 EITDRTLRTP TRIILDESII PKKYAKVILH CMYTDMVDLA VLHCSPSVGS 351 400 ENSTTRP00000010996/1-1122 LSEVQALVAG KPNMTRAEEA MELYHIALFL EFNMLAQGCE DIIAESISLD bmy_08710T0/1-714 ---------- ---------- ---------- --------CE DIIAESISLD BACU010719/1-1108 LSEVQALVAG KPNMTRAEEA MELYHIALFL EFNMLAQGCE DIIAESISLD ENSP00000335615/1-1132 LSEVQALVAG KPNMTRAEEA MELYHIALFL EFNMLAQGCE DIIAESISLD ENSBTAP00000055665/1-1125 LSEVQALVAG KPNMTRAEEA MELYHIALFL EFNMLAQGCE DIIAESISLD 401 450 ENSTTRP00000010996/1-1122 TLIAILKWSS HPYGSKWVHR QALHFLCEEF SQVMTSDVFY ELSKDHLLTA bmy_08710T0/1-714 TLIAILKWSS HPYGSKWVHR QALHFLCEEF SQVMTSDVFY ELSKDHLLTA BACU010719/1-1108 TLIAILKWSS HPYGSKWVHR QALHFLCEEF SQVMTSDVFY ELSKDHLLTA ENSP00000335615/1-1132 TLIAILKWSS HPYGSKWVHR QALHFLCEEF SQVMTSDVFY ELSKDHLLTA ENSBTAP00000055665/1-1125 TLIAILKWSS HPYGSKWVHR QALHFLCEEF SQVMTSDVFY ELSKDHLLTA 451 500 ENSTTRP00000010996/1-1122 IQSDYLQASE QDILKYLIKW GEHQLMKRIA DREPNLLSGT AHSVNKRGVK bmy_08710T0/1-714 IQSDYLQASE QDILKYLIKW GEHQLMKRIA DREPNLLSGT AHSVNKRGVK BACU010719/1-1108 IQSDYLQASE QDILKYLIKW GEHQLMKRIA DREPNLLSGT AHSVNKRGVK ENSP00000335615/1-1132 IQSDYLQASE QDILKYLIKW GEHQLMKRIA DREPNLLSGT AHSVNKRGVK ENSBTAP00000055665/1-1125 IQSDYLQASE QDILKYLIKW GEHQLMKRIA DREPNLLSGT AHSVNKRGVK 501 550 ENSTTRP00000010996/1-1122 RRDLDIEELR EILSSLLPFV RIEHILPINS EVLSDAMKRG LISTPPSDML bmy_08710T0/1-714 RRDLDIEELR EILSSLLPFV RIEHILPINS EVLSDAMKRG LISTPPSDML BACU010719/1-1108 RRDLDIEELR EILSSLLPFV RIEHILPINS EVLSDAMKRG LISTPPSDML ENSP00000335615/1-1132 RRDLDMEELR EILSSLLPFV RIEHILPINS EVLSDAMKRG LISTPPSDML ENSBTAP00000055665/1-1125 RRDLDIEELR EILSSLLPFV RIEHILPINS EVLSDAMKRG LISTPPSDML 551 600 ENSTTRP00000010996/1-1122 PTTEGGKSNA WLRQKNAGIY VRPRLFSPYV EEAKSVLDXX XXXXXXXXXX bmy_08710T0/1-714 PTTEGGKSNA WLRQKNAGIY VRPRLFSPY- ----SVLDEM MVEQTDLVRL BACU010719/1-1108 PTTEGGKSNA WLRQKNAGIY VRPRLFSPYV EEAKSVLDEM MVEQTDLVRL ENSP00000335615/1-1132 PTTEGGKSNA WLRQKNAGIY VRPRLFSPYV EEAKSVLDEM MVEQTDLVRL ENSBTAP00000055665/1-1125 PTTEGGKSNA WLRQKNAGIY VRPRLFSPYV EEAKSVLDEM MVEQTDLVRL 601 650 ENSTTRP00000010996/1-1122 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXPR bmy_08710T0/1-714 RMVRMSNVPD TLYMVNNAVP QCCHMISHQQ ISSNQSSPPS VVANEIPVPR BACU010719/1-1108 RMVRMSNVPD TLYMVNNAVP QCCHMISHQQ ISSNQSSPPS VVANEIPVPR ENSP00000335615/1-1132 RMVRMSNVPD TLYMVNNAVP QCCHMISHQQ ISSNQSSPPS VVANEIPVPR ENSBTAP00000055665/1-1125 RMVRMSNVPD TLYMVSNAVP QCCHMISHQQ ISSNQSSPPS VVANEIPVPR 651 700 ENSTTRP00000010996/1-1122 LLIMKDMVRR LQELRHTEQV QR-YALNCGE GATVSYEIQI RVLREFGLAD bmy_08710T0/1-714 LLIMKDMVRR LQELRHTEQV QRAYALNCGE GATVSYEIQI R--------- BACU010719/1-1108 LLIMKDMVRR LQELRHTEQV QRAYALNCGE GATVSYEIQI RVLREFGLAD ENSP00000335615/1-1132 LLIMKDMVRR LQELRHTEQV QRAYALNCGE GATVSYEIQI RVLREFGLAD ENSBTAP00000055665/1-1125 LLIMKDMVRR LQELRHTEQV QRAYALNCGE GATVSYEIQI RVLREFGLAD 701 750 ENSTTRP00000010996/1-1122 AAAELLQNPH KFFPDERFGD ESPLLTMRQS GRCRVSSNPA AETVFTDPDS bmy_08710T0/1-714 -------NPH KFFPDERFGD ESPLLTMRQS GRCRVTSTPA AETVFTDPDS BACU010719/1-1108 AAAELLQNPH KFFPDERFGD ESPLLTMRQS GRCRVSSTPA AETVFTDPDS ENSP00000335615/1-1132 AAAELLQNPH KFFPDERFGD ESPLLTMRQP GRCRVNSTPP AETMFTDLDS ENSBTAP00000055665/1-1125 AAAELLQNPH KFFPDERFGD ESPLLTMRQS GRCRVNSTPT AETMFTDLDS 751 800 ENSTTRP00000010996/1-1122 FVAFHPPLPP PPPPYHPPAT PVHHHLKAGW RQRPPSQHPS RSFSYPCNHS bmy_08710T0/1-714 FVAFHPPLPP PPPPYHPPAT PVHHHLKAGW RQRPPSQHPS RSFSYPCNHS BACU010719/1-1108 FVAFHPPLPP PPPPYHPPAT PVHHHLKAGW RQRPPSQHPS RSFSYPCNHS ENSP00000335615/1-1132 FVAFHPPLPP PPPPYHPPAT PIHNQLKAGW KQRPPSQHPS RSFSYPCNHS ENSBTAP00000055665/1-1125 FVAFHPPLPP PPPPYHPPAT PIHNQLKAGW KQRPPSQHPS RSFSYPCNHS 801 850 ENSTTRP00000010996/1-1122 LFHSRPAPKA VPPPVCLPGV QAAGPDCPGT TGLGRQTVAA AASAA----- bmy_08710T0/1-714 LFHSRAAPKA VPPPVCLPGV QAAGPDCAGT TGLGRQTVAA AASAA----- BACU010719/1-1108 LFHARAAPKA VPPPVCLPGV QAAGPDCAGT TGLGRQTVAA AASAA----- ENSP00000335615/1-1132 LFHSRTAPKA GPPPVYLPSV KAAPPDCTST AGLGRQTVAA AAATTTSTAT ENSBTAP00000055665/1-1125 LFHSRTAPKA GPPPVYLPGV KAAAPDCTNT TGLGRQTVAA AAAAASTT-- 851 900 ENSTTRP00000010996/1-1122 ----VVSERQ VCTQPVLNDL MPDIAMGVST LSLKDRRLPE LAVDTELSQS bmy_08710T0/1-714 ----VASERQ VCTQPGLNDL MPDIAMGVSA LSLKDRRLPE LAVDTELSQS BACU010719/1-1108 ----VTSERQ VCTQPVLNDL MPDIAMGVST LSLKDRRLPE LAVDTELSQS ENSP00000335615/1-1132 AAAAAASEKQ VRTQPVLNDL MPDIAVGVST LSLKDRRLPE LAVDTELSQS ENSBTAP00000055665/1-1125 ----IASEKQ VCTQPVLNDL MPDIAMGVST LSLKDRRLPE LAVDTELSQA 901 950 ENSTTRP00000010996/1-1122 VSEVVPGPPQ HLSCIPQRHT HTSRKKHTLE QKPDTRENQQ -----EYPDF bmy_08710T0/1-714 VSEVGPGPPQ HLSCIPQRHT HTSRKKHTLE QKTDTRENQQ -----EYPDF BACU010719/1-1108 VSEVGPGPPQ HLSCIPQRHT HTSRKKHTLE QKTDTRENQQ GENXXEYPDF ENSP00000335615/1-1132 VSEAGPGPPQ HLSCIPQRHT HTSRKKHTLE QKTDTRENPQ -----EYPDF ENSBTAP00000055665/1-1125 VSEVGPGPPQ HLSCIPQRHT HTSRKKHTLE QKTDARENQQ -----EYPDF 951 1000 ENSTTRP00000010996/1-1122 YDFSNAACRP STPAPGRRSP SPPQGGYFGP DLYSHNKASP SGLKSAYLPG bmy_08710T0/1-714 YDFSNAACRP STPAPGRRTP SPSQGGYFGP DLYSHNKASP SGLKSAYLPG BACU010719/1-1108 YDFSNAACRP STPAPGRRTP SPSQGGYFGP DLYSHNKASP SGLKSAYLPG ENSP00000335615/1-1132 YDFSNAACRP STPALSRRTP SPSQGGYFGP DLYSHNKASP SGLKSAYLPG ENSBTAP00000055665/1-1125 YDFSNAACRP SAPAPGRRTP SPSQGGYFGP DLYSHNKASP SGLKSAYLPG 1001 1050 ENSTTRP00000010996/1-1122 QTSPKKQEEA RREYPLSPDG HLHRQKNEPV HLDVVEQPPQ RSDFPLAAPE bmy_08710T0/1-714 QTSPKKQEEA RREYPLSPDG HLHRQKNEPV HLDVVEQPPQ RSDFPLAAPE BACU010719/1-1108 QTSPKKQEEA RREYPLSPDG HPHRQKNEPV HLDVVEQPPQ RSDFPLAAPE ENSP00000335615/1-1132 QTSPKKQEEA RREYPLSPDG HLHRQKNEPI HLDVVEQPPQ RSDFPLAAPE ENSBTAP00000055665/1-1125 QTSPKKQEET RKEYPLPPDG HPHRQKSEPI HLDVVEQPPQ RPDFPLAAPE 1051 1100 ENSTTRP00000010996/1-1122 NAGNGPAHVR GRTAVETDLT FGLTPNRPSH SACSSEAPEE RSGRRLADSE bmy_08710T0/1-714 NAGNGPAHVR GRTAVETDLT FGLTPNRPSH SACSSEAPEE RSGRRLADSE BACU010719/1-1108 NAGNGPAHVR GRTAVETDLT FGLTPNRPSH SACSSEAPEE RSGRRLADSE ENSP00000335615/1-1132 NASTGPAHVR GRTAVETDLT FGLTPNRPSL SACSSEAPEE RSGRRLADSE ENSBTAP00000055665/1-1125 NAGSGSAHVR GRAAVETDLT FGLTPNRPSH SACSSEAPEE RSGRRLAD-E 1101 1150 ENSTTRP00000010996/1-1122 SLGHGAPRNT DLEREDSISR GRRSPSKPDF LYKKSAL bmy_08710T0/1-714 SLGHGAQRNT DLEREDSISR GRRSPSKPDF LYKKSAL BACU010719/1-1108 SLGHGAQRNT DLEREDSISR GRRSPSKPDF LYKKSAL ENSP00000335615/1-1132 SLGHGAQRNT DLEREDSISR GRRSPSKPDF LYKKSAL ENSBTAP00000055665/1-1125 SLGHGAQRNT DLEREDSVSR GRRSPSKPDF LYKKSAL