KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:08 2014 Check: 00 .. Name: BACU006009/1-529 Len: 785 Check: 5647 Weight: 1.00 Name: ENSP00000406209/1-662 Len: 785 Check: 6309 Weight: 1.00 Name: ENSBTAP00000055682/1-576 Len: 785 Check: 3110 Weight: 1.00 Name: bmy_21468T0/1-609 Len: 785 Check: 7456 Weight: 1.00 Name: ENSTTRP00000015440/1-500 Len: 785 Check: 2929 Weight: 1.00 // 1 50 BACU006009/1-529 ---------- ---------- ---------- ---------- ---------- ENSP00000406209/1-662 MGDQSWLWNQ AAPGVRSPVF ACSVEKGNVP LVLSEHLAHS RDPGSGAVRF ENSBTAP00000055682/1-576 ---------- ---------- ---------- ---------- ---------- bmy_21468T0/1-609 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015440/1-500 ---------- ---------- ---------- ---------- ---------- 51 100 BACU006009/1-529 ---------- ---------- ---------- ---------- ---------- ENSP00000406209/1-662 LISPEPWASA ILGTSGLLAS PVLPAALDAV TCQHLPQPSS GSRPISPRIG ENSBTAP00000055682/1-576 ---------- ---------- ---------- ---------- ---------- bmy_21468T0/1-609 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015440/1-500 ---------- ---------- ---------- ---------- ---------- 101 150 BACU006009/1-529 ---------- ---------- ---------- ---------- ---------- ENSP00000406209/1-662 ALCPLLLQPG TMSTSSLRRQ MKNIVHNYSE AEIKVREATS NDPWGPSSSL ENSBTAP00000055682/1-576 ---------- -MSTSSLRRQ VKNIVHNYSE AEIKVREATS NDPWGPSSSL bmy_21468T0/1-609 ---------- -MSTSSLRRQ MKNIVHNYSE AEIKVREATS NDPWGPSSSL ENSTTRP00000015440/1-500 ---------- ---------- ---------- ---------- ---------- 151 200 BACU006009/1-529 ---------- ---------- ---------- --------MT LMEYLIKTGS ENSP00000406209/1-662 MSEIADLTYN VVAFSEIMSM IWKRLNDHGK NWRHVYKAMT LMEYLIKTGS ENSBTAP00000055682/1-576 MSEIADLTYN VVAFSEIMSM IWKRLNDHGK NWRHVYKAMT LMEYLIKTGS bmy_21468T0/1-609 MSEIADLTYN VVAFSEIMSM IWKRLNDHGK NWRHVYKAMT LMEYLIKTGS ENSTTRP00000015440/1-500 ---------- ---------- ---------- -------AMT LMEYLIKTGS 201 250 BACU006009/1-529 ERVSQQCKEN MYAVQTLKDF QYVDRDGKDQ GVNVREKAKQ LVALLRDEDR ENSP00000406209/1-662 ERVSQQCKEN MYAVQTLKDF QYVDRDGKDQ GVNVREKAKQ LVALLRDEDR ENSBTAP00000055682/1-576 ERVSQQCKEN MYAVQTLKDF QYVDRDGKDQ GVNVREKARQ LVALLRDEDR bmy_21468T0/1-609 ERVSQQCKEN MYAVQTLKDF QYVDRDGKDQ GVNVREKAKQ LVALLRDEDR ENSTTRP00000015440/1-500 ERVSQQCKEN MYAVQTLKDF QYVDRDGKDQ GVNVREKAKQ LVALLRDEDR 251 300 BACU006009/1-529 LREERAHALK TKEKLAQTAT ASSAAVGSGP PPEAEQAWPQ SSGEEELQLQ ENSP00000406209/1-662 LREERAHALK TKEKLAQTAT ASSAAVGSGP PPEAEQAWPQ SSGEEELQLQ ENSBTAP00000055682/1-576 LREERAHALK TKEKLAQTAT ASSAAVGSGP PPEAEQAWPQ SSGEEELQLQ bmy_21468T0/1-609 LREERAHALK TKEKLAQTAT ASSAAVGSGP PPEAEQAWPQ SSGEEELQLQ ENSTTRP00000015440/1-500 LREERAHALK TKEKLAQTAT ASSAAVGSGP PPEAEQAWPQ SSGEEELQLQ 301 350 BACU006009/1-529 LALAMSKEEA DQPLTLSLPQ PPSCGPEDDV QLQLALSLSR EEHDK----- ENSP00000406209/1-662 LALAMSKEEA D--------Q ---------- ---------- -----EERIR ENSBTAP00000055682/1-576 LALAMSKEEA D--------Q PPSCGPEDDA QLQLALSLSR EEHDKEERIR bmy_21468T0/1-609 LALAMSKEEA D--------Q PPSCGPEDDV QLQLALSLSR EEHDKEERIR ENSTTRP00000015440/1-500 LALAMSKEEA D--------Q PPSCGPEDDV QLQLALSLSR EEHDKEERIR 351 400 BACU006009/1-529 ---------- ---------- ---SSLMDLA DVFTAPAAPQ AADPWGGPVP ENSP00000406209/1-662 RGDDLRLQMA IEESKRETGG KEESSLMDLA DVFTAPAPAP TTDPWGGPAP ENSBTAP00000055682/1-576 RGDDLRLQMA IEESKRETAG QEESSLMDLA DVFTAPAAAP ATDPWGAPVS bmy_21468T0/1-609 RGDDLRLQMA IEESRRETVG QEESSLMDLA DVFTAPAAPQ AADPWGGPVP ENSTTRP00000015440/1-500 RGDDLRLQMA IEESKRETVG QEESSLMDLA DVFTAPAAPQ AADPWGGPVP 401 450 BACU006009/1-529 IAAALPAAAP TSDPWGGPPV PPAADPWGGP APTPASGDPW RPAAPAGPPV ENSP00000406209/1-662 MAAAVPTAAP TSDPWGGPPV PPAADPWGGP APTPASGDPW RPAAPAGPSV ENSBTAP00000055682/1-576 MAAALPTAAP ASDPWGGPPV PQAADPWGGP APTPASGDPW RPAAPAGPPA bmy_21468T0/1-609 MAAALPAAAP TSDPWGGPPV PPAADPWGGP APTPASGDPW RPAAPAGPPV ENSTTRP00000015440/1-500 MAAALPTAAP TSDPWGGPPV PPAADPWGGP APTPASGDPW RPAAPTGPPV 451 500 BACU006009/1-529 DPWGGTAAPA AGEGPTPDPW GGSDGGAPVG GLPASDPWAP AAAFSDPWGA ENSP00000406209/1-662 DPWGGTPAPA AGEGPTPDPW GSSDGGVPVS GPSASDPWTP APAFSDPWGG ENSBTAP00000055682/1-576 DPWGGTQAPA AGEGPAPDPW GGSDGGAPVS GPPASDPWAP APAFSDPWGG bmy_21468T0/1-609 DPWGGTAAPV AGEGPTPDPW GSSDGGAPVG GPPASDPWAP APAFSDPWGA ENSTTRP00000015440/1-500 DPWGGTAAPV AGEGPTPDPW GSSDGGAPVG GPPGSDPWAP APAFSDPWGG 501 550 BACU006009/1-529 SRTKPSANGT A--------- ---------- ---------- ----AVGGFD ENSP00000406209/1-662 SPAKPSTNGT T--------- ---------- ---------- ----AAGGFD ENSBTAP00000055682/1-576 SPAKPSTNGT A--------- ---------- ---------- ----VVGGFD bmy_21468T0/1-609 SHTKPSANGT AGTGGVARGG RASSVGGVAS PGPLGKLRAH PDPTAVGGFD ENSTTRP00000015440/1-500 SCTKPSANGT A--------- ---------- ---------- ----VVGGFD 551 600 BACU006009/1-529 TEPDEFSDFE RLRTALPASG SSTGELELLA GEVPARSPGA FDMSGVGGSL ENSP00000406209/1-662 TEPDEFSDFD RLRTALPTSG SSAGELELLA GEVPARSPGA FDMSGVRGSL ENSBTAP00000055682/1-576 TEADEFSDFD RLRTALPASG SSTGELELLA GEVPARSPGA FDMSGVGGSL bmy_21468T0/1-609 TEPDEFSDFE RLRTALPASG SSTGELELLA GEVPARSPGA FDMSGVGGSL ENSTTRP00000015440/1-500 TEPDEFSDFE QLRTALPASG SSTGELELLA GEVPARSPGA FDMSGVGGSL 601 650 BACU006009/1-529 AEAVGSPPPA AAPTPTPPTR KTPESFLGPN AALVDLDSLV SRPGPTPPGA ENSP00000406209/1-662 AEAVGSPPPA ATPTPTPPTR KTPESFLGPN AALVDLDSLV SRPGPTPPGA ENSBTAP00000055682/1-576 AEAVGSPPPA AAPTPTPPTR KTPESFLGPN AALVDLDSLV SRPGPAMPGA bmy_21468T0/1-609 AEAVGSPQPA AAPTPTPPTR KTPESFLGPN AALVDLDSLV SRPGPTLPGA ENSTTRP00000015440/1-500 AEAVGSPPPA AAPTPTPPTR KTPESFLGPN AALVDLDSLV SRPGPTPPGA 651 700 BACU006009/1-529 KASNPFLPS- ----APGV-- PEDPPPPDAS QTLCFTGRDA AEPACHLLKN ENSP00000406209/1-662 KASNPFLPGG GPATGPSVTN PFQPAPP-AT LTLNQLRLSP VPPVPGAPPT ENSBTAP00000055682/1-576 KASNPFLPSG APATGPSITN PFQPAPP-AT LTLNQLRISP VPPVAGAPST bmy_21468T0/1-609 KASNPFLPSG GPATGPSITN PFQPAPP-AT LTLNQLRLSP VPPVAGAPPT ENSTTRP00000015440/1-500 KASNPFLPSG GPATGPSITN PFQPAPP-AT LTLNQLRLSP VPPVAGAPPT 701 750 BACU006009/1-529 AEEGDDGNVG LRFTLVEGLK ANSKASQVII YDEDVIGYVN IQGHTHCGKK ENSP00000406209/1-662 YISPLGGGPG LPPMMPPGPP APNTN----- ---------- ---------- ENSBTAP00000055682/1-576 YISPLGGGPG LPPMMPPGPP APNTN----- ---------- ---------- bmy_21468T0/1-609 YISPLGGGPG LPPMMPQGPP APNTN----- ---------- ---------- ENSTTRP00000015440/1-500 YISPLGGGPG LPPMMPQGPP APNTN----- ---------- ---------- 751 800 BACU006009/1-529 NRSSSKNPHY RHPLHFYCKG TNSSFTFTSV IPLLP ENSP00000406209/1-662 ---------- ---------- ---------- -PFLL ENSBTAP00000055682/1-576 ---------- ---------- ---------- -PFLL bmy_21468T0/1-609 ---------- ---------- ---------- -PFLL ENSTTRP00000015440/1-500 ---------- ---------- ---------- -PFLL