KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:10 2014 Check: 00 .. Name: ENSP00000296513/1-576 Len: 622 Check: 6461 Weight: 1.00 Name: ENSBTAP00000055686/1-622 Len: 622 Check: 9542 Weight: 1.00 Name: ENSTTRP00000010305/1-577 Len: 622 Check: 9618 Weight: 1.00 Name: BACU004205/1-532 Len: 622 Check: 7366 Weight: 1.00 Name: bmy_02489T0/1-411 Len: 622 Check: 1959 Weight: 1.00 // 1 50 ENSP00000296513/1-576 ---------- ---------- ---------- ---------- -----MASNN ENSBTAP00000055686/1-622 EATASSAAGR RAPGLRPGLR LGQSSPPAES GQPGKKDNTE FVGEKMSGNN ENSTTRP00000010305/1-577 ---------- ---------- ---------- ---------- -----MSGHD BACU004205/1-532 --MASAAAGR RAPGLR---- ---------- ---------- -LGEKMSGHD bmy_02489T0/1-411 ---------- ---------- ---------- ---------- ----MKYKRG 51 100 ENSP00000296513/1-576 HWFQSSQVPS FAQMLKKNLP VQPATKTITT PTGWSSESYG LSKMASKVTQ ENSBTAP00000055686/1-622 DWFQSSRVPS FAQMLKKNLP VQPSAQTVTT PTGYSSESYS LSNMASKVTQ ENSTTRP00000010305/1-577 DWFQGSRVPS FAQMLKKNLA VQPSAQTVTT PTGCSSESYS LSNMTSRVTQ BACU004205/1-532 DWFQSSRVPS FAQMLKKNLP VQPSAQTVTT PTGCSSESYS LSNMASKVTH bmy_02489T0/1-411 EINPVSALHQ FAQMQRVQLD LK---ETVT- ---------- ----AGKYEV 101 150 ENSP00000296513/1-576 VTGNFPEPLL SKNLSSISNP VLPPKKIPKE FIMKYKRGEI NPVSALHQFA ENSBTAP00000055686/1-622 VTGNFPEPLL SKGLSSISNP VLPPKKIPKE FIMKYKRGEI NPVSALHQFA ENSTTRP00000010305/1-577 VTGNFPEPLL SKGLSPISNP LLPPKKIPKE FIMKYKHGEI NPVSALHQFA BACU004205/1-532 VTGN------ ---------- ---------- ---------- ---------- bmy_02489T0/1-411 VSGN------ ---------- ---------- ---------- ---------- 151 200 ENSP00000296513/1-576 QMQRVQLDLK ETVTTGNVMG PYFAFCAVVD GIQYKTGLGQ NKKESRSNAA ENSBTAP00000055686/1-622 QMQRVQLDLK ETVTTGNVMG PYFAFCAVVD GIQYKTGLGQ NKKESRSNAA ENSTTRP00000010305/1-577 QMQRVQFDLK ETVTTGNVMG PYFAFCAVVD GIQYKTGLGQ NKKESRSNAA BACU004205/1-532 ---------- -------VLG PYFAFCAVVD GIQYKTGLGQ NKKESRSNAA bmy_02489T0/1-411 ---------- -------VLG PYFAFCAVVD GIQYKTGLGQ NKKESRSNAA 201 250 ENSP00000296513/1-576 KLALDELLQL DEPEPRILET SGPPPFPAEP VVLSELAYVS KVHYEGRHIQ ENSBTAP00000055686/1-622 KLALDELLQL NEPEPRISET SGPPPIPAEP IVSPEPVYVS KVHYEGRHIQ ENSTTRP00000010305/1-577 KLALDELLQL DETEPRISET SGPPPIPAEP IVSPEPVYVS KVHYEGRHIQ BACU004205/1-532 KLALDELLQL AETEPRISET SGPPPIPAEP IVSPEPVYVS KVHYEGRHIQ bmy_02489T0/1-411 KLALDELLQL TETEPRISET S--------- ---------- ----EGRHIQ 251 300 ENSP00000296513/1-576 YAKISQIVKE RFNQLISNRS EYLKYSSSLA AFIIERAGQH EVVAIGTGEY ENSBTAP00000055686/1-622 FAKISQIVKE TFSQLISSQS DYLKCSNSLA AFIIERAGQH EVVAIGTGEY ENSTTRP00000010305/1-577 FAKISQIVKG TFYQLVSNHS EYLKCSNSLA AFIIERAGQR EVVAIGTGEY BACU004205/1-532 FAKISQIVKE TFYQLISSHS EYLKCSNSLA AFIIERAGQH EVVAIGTGEY bmy_02489T0/1-411 FAKISQIVKE TFYQLISNHS EYLKCSDSLA AFIIERAGQH EVVAIGTGEY 301 350 ENSP00000296513/1-576 NYSQDIKPDG RVLHDTHAVV TARRSLLRYF YRQLLLFYSK NPAMMEKSIF ENSBTAP00000055686/1-622 NYSQCIKPNG RVLHDTHAVV TARRSLLRYF YRQLLLYYSK NPAMMEKSIF ENSTTRP00000010305/1-577 NYSQCIKPNG RVLHDTHAVV TARRSLLRYF YRQLLLFYSK NPAVLEKSIF BACU004205/1-532 NYSQCIKPNG RVLHDTHAVV TARRSLLRYF YRQLLLFYSK NPAMMEKSIF bmy_02489T0/1-411 NYSQCIKPNG RVLHDTHAVV TARRSLLRYF YRQLLLFYSK NPAMMEKSIF 351 400 ENSP00000296513/1-576 CTEPTSNLLT LKQNINICLY MNQLPKGSAQ IKSQLRLNPH SISAFEANEE ENSBTAP00000055686/1-622 CTEPASDLLT LKQNINIYLY MNQLPKGSAQ IKSQLRLNPH SISAFEANEE ENSTTRP00000010305/1-577 CTEPASNLLT LKQNINIYLY MNQLPKGSAQ IKSQLRLNPC SVSAFEAHEE BACU004205/1-532 CTERASNLLT LKQNINIYLY MNQLPKGSAQ IKSQLRLNPH SVSAFEANEE bmy_02489T0/1-411 CTEPASNLLT LKQNINIYLY MNQLPKGSAQ IKSQL----- ---------- 401 450 ENSP00000296513/1-576 LCLHVAVEGK IYLTVYCPKD GVNRISSMSS SDKLTRWEVL GVQGALLSHF ENSBTAP00000055686/1-622 LSLHVAVEGK IYLTVYCPAD VVNRISSMSS SDKLTRWEVL GVQGALLSHF ENSTTRP00000010305/1-577 LSLHVAVEGK IHLTVYCPAD VVNRISSMAS SDKLMRWGVL GVQGALLSQF BACU004205/1-532 LSLHVAVEGK IHLTVYCPAD VVNRVSSMAS SDKLTRWGVL GVQGALLSQF bmy_02489T0/1-411 ---------- ---------- ---------- --KPITW--- ---------- 451 500 ENSP00000296513/1-576 IQPVYISSIL IGDGNCSDTR GLEIAIKQRV DDALTSKLPM FYLVNRPHIS ENSBTAP00000055686/1-622 IQPVYINSIL VGDGNCSDTR GLEIAIKQRV DDALTSKLPM FYLVNRPHIS ENSTTRP00000010305/1-577 IQPVYISNIL VGDGNCSDTR GLEIAIKQRV DDALTSKLPM FYLVNRPHIS BACU004205/1-532 IQPVYINNIL VGDGNCSDTR GLEIAIKQRV DDALTSKLPM FYLVNRPHIS bmy_02489T0/1-411 ---FTIQKIQ KGDGNCSDTR GLEIAIKQRV DDALTSKLPM FYLVNRPHIS 501 550 ENSP00000296513/1-576 LVPSAYPLQM NLEYKFLSLN WAQGDVSLEI VDGLSGKITE SSPFKSGMSM ENSBTAP00000055686/1-622 LVPSAYPFQT NLEYKFLSLN WAQGDISLEI VDGLSGKITE SSPFKSGVSM ENSTTRP00000010305/1-577 LVPSAYPCQT NLEYKFLSLN WAQGDISLEI VDGLTGKTTE SSPFKSGVSM BACU004205/1-532 LVPSAYPFQT NLEYKFLSLN WAQGDISLEI VDGLSGKITE SSPFKSGVSM bmy_02489T0/1-411 LVPSAYPFQT NLEYKFLSLN WAQGDISLEI VDGLSGKITE SSPFKSGVSM 551 600 ENSP00000296513/1-576 ASRLCKAAML SRFNLLAKEA KKE-LLEAGT YHAAKCMSAS YQEAKCKLKS ENSBTAP00000055686/1-622 ASRLCKAAML SRFNLLAKEA KKEDILEAST YHAAKRMSGS YQEAKTLLKS ENSTTRP00000010305/1-577 ASRLCKAAML SRFNLLAKEA EKEDLLEAST YHAAKHMSGS YQEAKTLLKS BACU004205/1-532 ASRLCKAAML SRFNLLAKEA EKEDLLEAST YHAAKHMSGS YQEAKTLLKS bmy_02489T0/1-411 ASRLCKAAML SRFNLLAKEA KKEDLLEAST YHAAKHMSGS YQEAKTLLKS 601 650 ENSP00000296513/1-576 YLQQHGYGSW IVKSPCIEQF NM ENSBTAP00000055686/1-622 YLQQHGYGSW IVKSPCIEQF SM ENSTTRP00000010305/1-577 YLQQHGYGSW IVKSPCIEQF SM BACU004205/1-532 YLQQHGYGSW IVKSPCIEQF SM bmy_02489T0/1-411 YLQQHGYGSW IVKSPCIEQF SM