KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:27:11 2014 Check: 00 .. Name: ENSBTAP00000055687/1-453 Len: 513 Check: 1620 Weight: 1.00 Name: ENSTTRP00000012113/1-468 Len: 513 Check: 228 Weight: 1.00 Name: bmy_10081T0/1-486 Len: 513 Check: 7151 Weight: 1.00 Name: BACU009098/1-477 Len: 513 Check: 7927 Weight: 1.00 // 1 50 ENSBTAP00000055687/1-453 TELPEARPLS FS--EFNP-- KSGVMSLQDS QIPADHGAET SGDHGAQTAS ENSTTRP00000012113/1-468 MECPEGRRCS SSENDLTPTS TSEVMSLRYS QTAVFHGAET AGGLGAQTAG bmy_10081T0/1-486 MERSKGRRRG SSGNDLTPTS TSEVTSLRYS QTAVDRRAQT AGGLGAQTAI BACU009098/1-477 MERRKGRRRG SSGNDLTPTS TSEVTSLRYS QTAVDRRAQT AGGLGVQTAI 51 100 ENSBTAP00000055687/1-453 D--------Q GIQTPADDPP GDAAIAATGT QAAVQASMNF QELEKKEMSS ENSTTRP00000012113/1-468 GFGAQTEGGL GAQTPADY-- GAQADAAIGN QAAARTPLEN LREG-TEMSR bmy_10081T0/1-486 G--------L GAQTPASY-- GAQAHAAIGN QAAARTPLEN LREG-KEMSR BACU009098/1-477 C--------L GAQT------ ----HAAIGN QAAARTPLEN LREGEEEMSR 101 150 ENSBTAP00000055687/1-453 SQDEPPHELE NQFILRLPME HASTVRKMVH SGSSSMKNKL KIDLFSDTRH ENSTTRP00000012113/1-468 SQDEPPYEFE KQFILRLPLE HASTARKIIR SGSAAMKDKL KIDLLSDGRH bmy_10081T0/1-486 SQDEPPCELE DQFILRLPLE HVSTVRKIVR SG-------- -----TDGRH BACU009098/1-477 SQDEPPCELE DQFILRLPLE HVSTVRKIAR SGSAAMKDKL KIDLLSGGRH 151 200 ENSBTAP00000055687/1-453 AVVEVDNVSL AAKLVDLPCV IGSLKTLDRK SFYKTADVSQ MLVCTADADV ENSTTRP00000012113/1-468 AVVGVEDVSL SAKLVDLPCV VESLKTLDKT TFYKTADISQ MLVCTADGGV bmy_10081T0/1-486 AVVGVEGVSL SAKLVDLPCV TESLKTLDKK TFFKTADISQ MLVCTADGGV BACU009098/1-477 AVVGFEGVSL PAKLVDLPCV IESLKTLDKK TFFKTADISQ MLVCTADGGV 201 250 ENSBTAP00000055687/1-453 QPSPEEPVTS TDPKAIRKAE KQRKKKYTWK HGITPPLRNV RKRKFRKTIK ENSTTRP00000012113/1-468 HSHREEPVTS TDLKAIRKSK KERQKKHIWK HGITPPLRNV KKRSFCKTTK bmy_10081T0/1-486 RSHPEKLVTS TDHKAIRKSE KERQKKYIWK HGITPPLRNV RKRRFCKTTK BACU009098/1-477 HSHPEELVTS TDHKAIRKSE KERQKKYVWK HGITPPLRNV RKRSFCKATK 251 300 ENSBTAP00000055687/1-453 KVADFKQIEE MDLPV----- ---------- ---------H IESPEVEKEV ENSTTRP00000012113/1-468 EVTDIKQTEE VSFPE----- ---------- ---------H VEPPDVEKEV bmy_10081T0/1-486 KVPDFKQIEE VSSPEEEDIS ARHRVLSDVT GIPSPTLVQH VDSPDVEKQV BACU009098/1-477 KVPDFKQIEE VSSPEEEDIS ARHRVLSDVT GIPSPTLVQH VDSPDVEKQV 301 350 ENSBTAP00000055687/1-453 KRLLCSDAEA VNARWEVIAE DETKEIESQG SIPGYAIASG MSDYKQRHTL ENSTTRP00000012113/1-468 KRLLHSDAEA ISVRWEVIAE GETKEIESQG FIPGFEIASE MSGCKQRHTL bmy_10081T0/1-486 KRLLCSDTEA VSVRWEVVAE GETEEIESQG FIPGFEIASE MSGYKQRHTS BACU009098/1-477 KRLLCSDTEA VSVRWEVVAE GETEEIESQG FIPGFEIASE MSGYKQRHTS 351 400 ENSBTAP00000055687/1-453 PEYYVLQEMC NDSSNN---T EEDDKDEEEE EEDYDDE--- --EEEDYYDE ENSTTRP00000012113/1-468 PEYGVFREMV DSSSNS--EV EDDKEEDEEG EEDYDDADKD KEEEEDYYEM bmy_10081T0/1-486 PEYGAFREMV NDSSSNSDEV EDDKEEDEEG EDDYDDEDED KKEEEDRYEV BACU009098/1-477 PEYGAFREMV NDSSSNRDEV EDDKEEDEEG EDDYDDEDED KKEEEDRYEV 401 450 ENSBTAP00000055687/1-453 DMERELQTRF TEYDQYEAKE GTSSMVMEIQ KYTQYAEKML HEIQRRAQRQ ENSTTRP00000012113/1-468 YMERELQDKF TESGQYEAKE GTSSMVMKIQ KQTHYVEKKL QELQCKAQRQ bmy_10081T0/1-486 YIEREPQAKF IESGQYEAKE GTSSMVMEIQ KQTHYVEKKL QEIQRKAQRQ BACU009098/1-477 YMESEPQAKF IESGQYEAKE ASSSMVMEIL KQTHYVEKKL QEVQRKGQRQ 451 500 ENSBTAP00000055687/1-453 KDLIRKVENL TLKNHLHSVL EQLKLQEEEK TEQL--SYLQ EKLNYFLKK- ENSTTRP00000012113/1-468 RKLIMKVENL MLKSHLQSVL EQLKLQEKQK NEQL--IYLR KRLNYFLKK- bmy_10081T0/1-486 KELVMKVENL TLKSHLQSML EQLKLQEKQK NEQL---YSN SHDKYIHIQK BACU009098/1-477 KELIMKVENL MLKNHLQPVL EQLKLQEKQK NEQVRSVFSH QPENI----- 501 550 ENSBTAP00000055687/1-453 ---------- --- ENSTTRP00000012113/1-468 ---------- --- bmy_10081T0/1-486 ETETQNLKDE KKE BACU009098/1-477 ---------- ---