KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:12 2014 Check: 00 .. Name: bmy_00710T0/1-378 Len: 473 Check: 1620 Weight: 1.00 Name: ENSP00000317579/1-468 Len: 473 Check: 4276 Weight: 1.00 Name: ENSBTAP00000055704/1-468 Len: 473 Check: 2955 Weight: 1.00 Name: BACU019952/1-422 Len: 473 Check: 6945 Weight: 1.00 Name: ENSTTRP00000011863/1-425 Len: 473 Check: 1624 Weight: 1.00 // 1 50 bmy_00710T0/1-378 --------MP LCSRRSRAGR VVRPRFSSRG TK-------- --GRNRGWHM ENSP00000317579/1-468 MADDAGLETP LCSEQFGSGE ARGCRAAADG SLQWEVGGWR WWGLSRAFTV ENSBTAP00000055704/1-468 LREGLGMADV LCSEQFGSGA ARGCRAAPDG SLQREAWGRR WWGFSGAFTA BACU019952/1-422 ---------- ---------- ---------- ---------- ------AFTA ENSTTRP00000011863/1-425 ---------- ---------- ---------- ---------- --GFS-AFTT 51 100 bmy_00710T0/1-378 SPGVRPHCAP SSSAPGRPGA AAPPPTG-AC SGRPGGGAGG GSPG--PSQR ENSP00000317579/1-468 KPEGR----- DAGEVGASGA PSPPLSGLQA VFLPQGFPDS VSPDYLPYQL ENSBTAP00000055704/1-468 KPGGR----- DGGGGVAPGT ASPPFSRLLA VFLPQGFPDS VSPDYLPYQL BACU019952/1-422 KPGGR----- DGGERVAPGT AVPPLSRLLA VFLPQGFPDS VSPDYLPYQL ENSTTRP00000011863/1-425 KPGGR----- DVGERVAPGT AVPPLSRLLA VFLPQGFPDS VSPDYLPYQL 101 150 bmy_00710T0/1-378 NPEDEMGAKG WLQGRPSH-L FPGSWLSSCL RASPIASART ICPTSCGIPC ENSP00000317579/1-468 WDSVQAFASS LSGSLATQAV LLGIGVGNAK ATVSAATATW LVKDSTGMLG ENSBTAP00000055704/1-468 WDSVQAFASS LSGSLATHAV LLGIGVGDAK ASVSAATATW LVKDSTGMLG BACU019952/1-422 WDSVQAFASS LSGSLATHAV LLGIGVGNAK ASVSAATATW LVKDSTGMLG ENSTTRP00000011863/1-425 WDSVQAFASS LSGSLATHAV LLGIGVGNAK ASVSAATATW LVKDSTGMLG 151 200 bmy_00710T0/1-378 R--------S KMDCNAKQWR LFADILNDVA MLLEITAPIF PMCFTMTICI ENSP00000317579/1-468 RIVFAWWKGS KLDCNAKQWR LFADILNDVA MFLEIMAPVY PICFTMTVST ENSBTAP00000055704/1-468 RIVFAWWMGS KMDCNAKQWR LFADILNDIA MFLEIMAPIL PFCFTITVCI BACU019952/1-422 RIIFAWWMGS KMDCNAKQWR LFADILNDVA MLLEIMAPIF PICFTMTICI ENSTTRP00000011863/1-425 RIIFAWWMGS KMDCNAKQWR LFADILNDVA MFLEIMAPIF PICFTMTICI 201 250 bmy_00710T0/1-378 SNLAKCIVGV AGGATRAALT MHQARRNNMA DVSAKDGSQE TLVSLAGLLV ENSP00000317579/1-468 SNLAKCIVSV AGGATRAALT VHQARRNNMA DVSAKDSSQE TLVNLAGLLV ENSBTAP00000055704/1-468 SNLAKCLVGV AGGATRAALT MHQARRNNMA DVSAKDGSQE TLVNLAGLLV BACU019952/1-422 SNLAKCIVGV AGGATRAALT MHQARRNNMA DVSAKDGSQE TLVSLAGLLV ENSTTRP00000011863/1-425 SNLAKCIVGV AGGATRAALT MHQARRNNMA DVSAKDGSQE TLVSLAGLLV 251 300 bmy_00710T0/1-378 SLLMLPLVSD CPSLSLGCFF FLTALHIYAN YRAVRALVIE TLNERRLWLV ENSP00000317579/1-468 SLLMLPLVSG CPGFSLGCFF FLTALHIYAN YRAVRALVME TLNEGRLRLV ENSBTAP00000055704/1-468 SLLMLPLVSD SPSLSLGCFF FLTALHIYAN YRAVRALVIE TLNEQRLWLV BACU019952/1-422 SLLMLPLVSD CPSLSLGCFF FLTALHIYAN YRAVRALVIE TLNERRLWLV ENSTTRP00000011863/1-425 SLLMLPLVSD CPSLSLGCFF LLTALHIYAN YRAVRALVIE TLNEGRLWLV 301 350 bmy_00710T0/1-378 LKHFLQRGEV LGPASANQVE PLWTGFWPSL SLSLGVPLHR VTSSVFELQK ENSP00000317579/1-468 LKHYLQRGEV LDPTAANRME PLWTGFWPAP SLSLGVPLHR LVSSVFELQQ ENSBTAP00000055704/1-468 LRHFLQRGEV LGPTSANQME PLWTGFWSSV SLSLGAPLHH VTSSVSELQQ BACU019952/1-422 LKHFLQRGEV LGPASANQME PLWTGFWPSL SLSLGVPLHR VTSSVFELQK ENSTTRP00000011863/1-425 MKHFLQRGEV LGPASANQME PLWTGFWPSL SLSLGVPLHR VTSSVFELQK 351 400 bmy_00710T0/1-378 LVEGHQEPYL LRWDQSQSKC AAFPQLQTHP P--------G LSLSFLQPQG ENSP00000317579/1-468 LVEGHQESYL LCWDQSQNQV QVVLNQKAGP KTILRAATHG LMLGALQGDG ENSBTAP00000055704/1-468 LVEGHQEPYL LRWDQSRNQV QVVLSQMAGP KAILRAATHG LVLGALRGDG BACU019952/1-422 LVEGHQEPYL LRWDQSQNQV QVVLSQMAGP ETILRAATHG LVLGALQGDG ENSTTRP00000011863/1-425 LVEGHQEPYL LRWDLSQNQV QVVLSQMAGP ETILRAATHG LVLGALQGDG 401 450 bmy_00710T0/1-378 PKP------- ---------- ---------- ---------- -------WTX ENSP00000317579/1-468 PLPAELEELR NRVRAGPKKE SWVVVKETHE VLDMLFPKFL KGLQDAGWKT ENSBTAP00000055704/1-468 PLPEELEELR NQAQAGPEKE SWVVVRETHQ VLDKLFPKFL KGLQDAGWST BACU019952/1-422 PLPGELEGLR NQVRAGPEKE SCVIVRETHQ VLDKLFPKFL KGLQDVGWTT ENSTTRP00000011863/1-425 ALPGELEGLR NRVRAGPEKE SCVIVRETHQ VLDKLFPKFL KGLQDAGWRT 451 500 bmy_00710T0/1-378 AGQ------- ---FGVCLVS --- ENSP00000317579/1-468 EKHQLEVDEW RATWLLSPEK KVL ENSBTAP00000055704/1-468 EKHQLEVDEW RATWLLCPEK KVL BACU019952/1-422 EKHQLEVDEW RATWLLCPEK KLL ENSTTRP00000011863/1-425 ENHQLEVDEW RATWLLCPEK KLL