KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:27:13 2014 Check: 00 .. Name: ENSP00000297324/1-319 Len: 321 Check: 9237 Weight: 1.00 Name: ENSBTAP00000055714/1-270 Len: 321 Check: 9130 Weight: 1.00 Name: bmy_18554T0/1-269 Len: 321 Check: 4862 Weight: 1.00 Name: BACU005196/1-270 Len: 321 Check: 7578 Weight: 1.00 // 1 50 ENSP00000297324/1-319 MAICPELAQT DKSALANLSD ETETLKNSTD EVQTSSSFSS SGGRQSSPLT ENSBTAP00000055714/1-270 ---------- ----MADLSK E--TLESLTD EVKSSGSFSS SGVLQPWSYA bmy_18554T0/1-269 ---------- ----MADFSK E--TFESFTD EVQSSGSFSS SGGRQPWSYA BACU005196/1-270 ---------- ----MADFSK E--TFESFTD EVQSSGSFSS SGGRQPWSYA 51 100 ENSP00000297324/1-319 SGSKLEREKQ TPSLEQGDTQ SELLDYKNYE KKLSKKWINY LKLKDSNFER ENSBTAP00000055714/1-270 SGSKSESGSL PSRSEYGDNQ SELSDFKANV KKLSRKWIHN LKGKETNSEQ bmy_18554T0/1-269 SGSKSESGTP TSRLQYGDNQ SEFSHFKNNE KKLSRKWINN LKGKETNSGQ BACU005196/1-270 SGSKSESGTP TSRLQYGDNQ SEFSHFKNNE KKLSRKWINN LKGKETNSGQ 101 150 ENSP00000297324/1-319 HQPDTKLPTE ITRVSDEELN ALQSYCTMKI NLIHRRGDSK KKTSSRHKKL ENSBTAP00000055714/1-270 YRPDTNHQTE ITQASPEELN ALQSFCTVKV NLIHHRANSK GKKSSRHKKL bmy_18554T0/1-269 YQPDTKLETE ITQASLEELN ALQSFCTVKI NLIHHSANSK GKKSSRHKKL BACU005196/1-270 YQPDTKLETE ITQASLEELN ALQSFCTFKI NLIHHSANSK GKKSSRHKKL 151 200 ENSP00000297324/1-319 HLGLDVEASE RDAFSC-TVP DELLNRIYFK NMRTTPKQEA AAKQHISYQC ENSBTAP00000055714/1-270 QLGPEAEAPE VDALKC-TVP DELLNRIYFK NMRTTPKQVG TAKQHISSRC bmy_18554T0/1-269 QLGSDAEAPE VDALNC-TVP DELLNRIYFK NMRTTPKEVV TAKQHISSRC BACU005196/1-270 QLGSDAEAPE VDALNCTTVP DELLNRIYFK NMRTTPKEVV TAKQHISSRC 201 250 ENSP00000297324/1-319 PYCNRKRAEL ALSAFLKQKK TLLESFLLQE RIDEHLHTKD FLTRIGEAHQ ENSBTAP00000055714/1-270 PDCIRKRAEL AQSAFLKQKK TLLESLLLQE KIDEHLHTQD FLTLVREAHQ bmy_18554T0/1-269 PSCNRKRAEL AQSAFLKQKK TLLESLLLQE KIDEHLHMKD FLTLIGEIHQ BACU005196/1-270 PNCNRKRAEL AQSAFLKQKK TLLESLLLQE KIDEHLHMKD FLTLIGEIHQ 251 300 ENSP00000297324/1-319 DFPRLSDDPR IIWKRLTEKS -HIRYSGFER SETEQKLQRD GNSACHLPFS ENSBTAP00000055714/1-270 SLPRLSDDPR RIWERLNERK VKLETLVFER SDIKQKM--- ---------- bmy_18554T0/1-269 SLPRLSDDPR IIWERLKEKS -QIGYSGFER SDIKQEM--- ---------- BACU005196/1-270 SLPRLSDDPR IIWERLKEKS -QIGYSGFER SDIKREM--- ---------- 301 350 ENSP00000297324/1-319 LPFLKRLTLI KPELVIVNDN V ENSBTAP00000055714/1-270 ---------- ---------- - bmy_18554T0/1-269 ---------- ---------- - BACU005196/1-270 ---------- ---------- -