KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:14 2014 Check: 00 .. Name: ENSP00000359940/1-1341 Len: 1568 Check: 3224 Weight: 1.00 Name: ENSBTAP00000055715/1-1327 Len: 1568 Check: 6141 Weight: 1.00 Name: ENSTTRP00000004358/1-1417 Len: 1568 Check: 6339 Weight: 1.00 Name: bmy_04219T0/1-1514 Len: 1568 Check: 9471 Weight: 1.00 Name: BACU009602/1-1281 Len: 1568 Check: 8325 Weight: 1.00 // 1 50 ENSP00000359940/1-1341 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055715/1-1327 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004358/1-1417 ---------- ---------- ---------- ---------- ---------- bmy_04219T0/1-1514 MMKASSGASK KYCDASEEPG TSESSRGIAG LEKQQAEPRE RANMRELMFP BACU009602/1-1281 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000359940/1-1341 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055715/1-1327 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004358/1-1417 ---------- ---------- ---------- ---------- ---------- bmy_04219T0/1-1514 TLKVIQDHVD VLKSTQEKLI KDYGTLMNEV TGLKETLREE NYRINIMEER BACU009602/1-1281 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000359940/1-1341 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055715/1-1327 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004358/1-1417 ---------I SAFYIPHEDG GKXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04219T0/1-1514 ISDFEAFAGG TLFQSPGLKV SK-------- ---------- ---------- BACU009602/1-1281 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000359940/1-1341 ---------- ---------- ---------- ---------- -------MTL ENSBTAP00000055715/1-1327 ---------- ---------- ---------- ---------- -------MTL ENSTTRP00000004358/1-1417 XXXXXXXGLQ FAASGGAHWR ISNSGVGLQL PSHHLMRGTA LQDSRGSMTL bmy_04219T0/1-1514 -------CKG FAASGGAHWR ISNSGAGLQL PSHHLVRGKA LQDSRGSMTL BACU009602/1-1281 ---------- ---------- ---------- ---------- -------MTL 201 250 ENSP00000359940/1-1341 DRPGEGATML KTFTVLLFCI RMSLGMTSIV M-DPQPELWI ESNYPQAPWE ENSBTAP00000055715/1-1327 DRPGEGATML RTFTLLLFCA GLSLGVTPMV M-PSQPELWI ESNYPQAPWE ENSTTRP00000004358/1-1417 DRPGEGATML RTFTLLLFCI ---------L M-QSQPELWI ETNYPQAPWE bmy_04219T0/1-1514 DRPGEGATML RTFTLLLFCI RLGLGMIPIA MIQSQPELWI ETNYPQAPWE BACU009602/1-1281 DRPGEGATML RTFTLLLFCI RLSLGMIPIA MIQSQPELWI ETNYPQAPWE 251 300 ENSP00000359940/1-1341 NITLWCRSPS RISSKFLLLK DKTQMTWIRP SHKTFQVSFL IGALTESNAG ENSBTAP00000055715/1-1327 NITLWCKSPS QISSKFLLLK DKTQMTWIRP SRKTFQVSFP IGALTQANTG ENSTTRP00000004358/1-1417 NITLWCKSPS RISSKFLLLK DKTQMTWIRP SHKTFQVSFP IGALTQSNTG bmy_04219T0/1-1514 NITLWCKSPS RISSKFLLLK DKTPMTWIRP SHKTFQVSFP IGALTQSNTG BACU009602/1-1281 NITLWCKSPS RISSKFLLLK DKTQMTWIRP SHKTFQVSFP IGALTQSNTG 301 350 ENSP00000359940/1-1341 LYRCCYWKET GWSKPSKVLE LEAPGQLPKP IFWIQAETPA LPGCNVNILC ENSBTAP00000055715/1-1327 LYRCCYWKET GWSEPSKVLE LEAPGQLPKP VFWIQTETSP LPGCNVNILC ENSTTRP00000004358/1-1417 LYRCCYWKET GWSEPSKVLE LEAPGQLPKP TFWIQAETSP LPGCNVNILC bmy_04219T0/1-1514 LYRCCYWKET GWSEPSQVLE LEAPGQLPKP TFWIQAETSP LPGCNVNILC BACU009602/1-1281 LYRCCYWKET GWSEPSKVLE LEAPGQLPKP TFWIQAETSP LPGCNVNILC 351 400 ENSP00000359940/1-1341 HGWLQDLVFM LFKEGYAEPV DYQVPTGTMA IFSIDNLTPE DEGVYICRTH ENSBTAP00000055715/1-1327 HGWLQDLVFM LFKEGYAEPV DYQVPTGRVA IFSIANMTPE SEGVYICRTH ENSTTRP00000004358/1-1417 HGWLQDLVFM LFKEGYAEPV DYQVPTGTVA IFSIANMTPE SEGVYICRTH bmy_04219T0/1-1514 HGWLQDLVFM LFKEGYAEPV DYQVPTGTVA IFSIANMTPE SEGVYICRTH BACU009602/1-1281 HGWLQDLVFM LFKEGYAEPV DYQVPTGTVA IFSIANITPE SEGVYICRTH 401 450 ENSP00000359940/1-1341 IQMLPTLWSE PSNPLKLVVA GLYPKPTLTA HPGPIMAPGE SLNLRCQGPI ENSBTAP00000055715/1-1327 IQMLPTLWSE PSNPLKLIVA GLYPKPTLTA YPGPIMAPGE SLNLRCQGPI ENSTTRP00000004358/1-1417 IQMLPTLWSE PSNPLKLIVA GLYPKPTLTA YPGPIMAPGE SLNLRCQGPI bmy_04219T0/1-1514 IQMLPTLWSE PSNPLKLTVA GLYPKPTLTA YPGPIMAPGE SLNLRCQGPI BACU009602/1-1281 IQMLPTLWSE PSNPLKLTVA GLYPKPTLTA YPGPIMAPGE SPNLRCQGPI 451 500 ENSP00000359940/1-1341 YGMTFALMRV EDLEKSFYHK KTIKNEANFF FQSLKIQDTG HYLCFYYDAS ENSBTAP00000055715/1-1327 YGMTFALIRL EDLEKSFYLK RPIKNEAYFF FRALKIHDAG HYLCFYYDGS ENSTTRP00000004358/1-1417 YGMTFALIRR EDLEKSFYHK RPLKNEAYFF FGALKIHNAG HYLCFYYDGS bmy_04219T0/1-1514 YGMTFALIRL EDLEKSFYRK RPLKNEAYFF FRALKIHDAG HYLCFYYDGS BACU009602/1-1281 YGMTFALIRL EDLEKSFYRK RPLKNEAYFF FRALKIHDAG HYLCFYYDGS 501 550 ENSP00000359940/1-1341 YRGSLLSDVL KIWVTDTFPK TWLLARPSAV VQMGQNVSLR CRGPVDGVGL ENSBTAP00000055715/1-1327 YRGSLLSDIL KIWVTDTFPK TWLLAQPSPV VQMGQNVSLW CRGPVDGVGL ENSTTRP00000004358/1-1417 HRGSLLSDIR KIWVTDTFPK TCLLAQPSPV VQMGQNVSLW CRGPVDGVEL bmy_04219T0/1-1514 YRGSLLSDIL KIWVTDTFPK TWLLAQPSPV VQMGQNVSLW CRGPVDGVEL BACU009602/1-1281 YRGSLLNDIL KIWVTDTFPK TWLLAQPSPA VQMGQNVSLW CRGPVDGVEL 551 600 ENSP00000359940/1-1341 ALYKKGEDKP LQFLDATSID DNTSFFLNNV TYSDTGIYSC HYLLTWKTSI ENSBTAP00000055715/1-1327 ALYKKGEDKP RQLLDTTSVY DDTSFFLNNV TSSDAGIYSC HYLLSWKTSI ENSTTRP00000004358/1-1417 TLYKKGEDKT LQLLDTTSIS DDESFLLNNV TYSDAGIYSC HCLLSWKTSI bmy_04219T0/1-1514 ALYKKGEDKT LRLLDTTSIG DDESFFLNNV TYSDAGIYSC HYLLSWKTSI BACU009602/1-1281 AFYKKGEDKT LQLLDTTSIS DDELFFLNNV TYSDAGIYSC HYLLSWNTSI 601 650 ENSP00000359940/1-1341 RMPSHNTVEL MVVD--KPPK PSLSAWPSTV FKLGKAITLQ CRVSHPVLEF ENSBTAP00000055715/1-1327 RTTSHNTMGL VVV------- ----AWPSTV FKLGKAITLQ CRVPHPVLEF ENSTTRP00000004358/1-1417 RMSSHNTVEL VVVGKYKPPK PSLSAWPSTV FKLGKAITLQ CRVPQPVLEF bmy_04219T0/1-1514 RMSSHNTVEL ------EPPK PSLSAWPSTV FKLGKVITLQ CRVPQPVLEF BACU009602/1-1281 RMSSHNTVEL VVVD--KPPK PSLSAWPSTV FKLGKVITLQ CRVPQPVLEF 651 700 ENSP00000359940/1-1341 SLEWEERETF QKFSVNGDFI ISNVDGKGTG TYSCSYRVET HPNIWSHRSE ENSBTAP00000055715/1-1327 CLEWEERATS QKFSVDGDFI ISNVEGKGTG TYSCSYRIEA HPNIWSHRSE ENSTTRP00000004358/1-1417 CLEWEERATS PKFSVDGDFI ISNVEGKGTG TYSCSYRIEA HPNIWSYRSE bmy_04219T0/1-1514 CLEWKGRATS PKFSADGDLI ISNVEGKGTG TYSCSYRIEA HLNIWSHRSE BACU009602/1-1281 CLEWEERATS PKFSVDGDFI ISNVAGKGTG TYSCSYRIEA HPNIWSHRSE 701 750 ENSP00000359940/1-1341 PLKLMGPAGY LTWNYVLNEA IRLSLIMQLV ALLLVVLWIR WKCRRLRIRE ENSBTAP00000055715/1-1327 PLKLMGPAGF LTWSHILNET IRLFLIIQLV ALLFVVLWIR WKCRRLRIRE ENSTTRP00000004358/1-1417 PLKLMGPAGF LTWNYVLNEA IRLSLIVQLF ALLLVELWIR WKCRRLRIRE bmy_04219T0/1-1514 PLKLMGPAGF LTWNYVLNEA IRLSLIMQLV ALLLVVLWIR WKCRRLRIRE BACU009602/1-1281 PLKLMGPAAL AAISFA---- ---------- ---------- ---------- 751 800 ENSP00000359940/1-1341 AWLLGTAQGV TMLFIVTALL CC-------- ---------- ---------A ENSBTAP00000055715/1-1327 AWLLGTAQGV TMLFILTALL CC-------- ---------- ---------- ENSTTRP00000004358/1-1417 AWLLGTAQGV TMLFILTALL CC-------- ---------- ---------- bmy_04219T0/1-1514 AWLLGTAQGV TMLFILTALL CCGEYKGVGK GPGQKAGVKS RGGGDKALAA BACU009602/1-1281 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000359940/1-1341 ISFAGLCNGV LIEETEIVMP TPKPELWAET NFPLAPWKNL TLWCRSPSGS ENSBTAP00000055715/1-1327 ----GLCTGV LTEETEIIMP TPKPELWAET NFPLAPWKNL TLWCRSPSGS ENSTTRP00000004358/1-1417 ----GLCNGV LTEETEIIMP TPKPELWAET NFPLAPWKNL TLWCRSPSGS bmy_04219T0/1-1514 ISFAGLCNGV LTEETEIIMP TPKPELWAET NFPLAPWKNL TLWCRSPSGS BACU009602/1-1281 ----GLCNGV LTEETEIIMP TPKPELWAET NFPLAPWKNL TLWCRSPSGS 851 900 ENSP00000359940/1-1341 TKEFVLLKDG TGWIATRPAS EQVRAAFPLG ALTQSHTGSY HCHSWEEMAV ENSBTAP00000055715/1-1327 TKEFVLLKDG TGWIATRPAS EQVRAAFPLG ALTQTHTGSY HCHSWEEMAV ENSTTRP00000004358/1-1417 TKEFVLLKDG TGWIATRPAS EQVRAAFPLG ALTQSHTGSY HCHSWEEMAV bmy_04219T0/1-1514 TKEFVLLKDG TGWIATRPAS EQVRAAFPLG ALTQSHTGSY HCHSWEEMAV BACU009602/1-1281 TKEFVLLKDG TGWIATRPAS EQVRAAFPLG ALTQSHTGSY HCHSWEEMAV 901 950 ENSP00000359940/1-1341 SEPSEALELV GTDILPKPVI SASPTIRGQE LQLRCKGWLA GMGFALYKEG ENSBTAP00000055715/1-1327 SEPSEALELV GTDILPKPVI SASPPIRGKE LQIRCKGWLA GMGFALYKEG ENSTTRP00000004358/1-1417 SEPSEALELV GTDILPKPVI SASPPVRGQE LQIRCKGWLA GMGFALYKEG bmy_04219T0/1-1514 SEPSEALELV GADILPKPVI SASPPVRGQE LQIRCKGWLA GMGFALYKEG BACU009602/1-1281 SEPSEDLELV GTDVLPKPVI SASPPVRGQE LQIRCKGWLA DMGFALYKEG 951 1000 ENSP00000359940/1-1341 EQEPVQQLGA VGREAFFTIQ RMEDKDEGNY SCRTHTEKRP FKWSEPSEPL ENSBTAP00000055715/1-1327 MQEPIQQLGA VGREAFFTIQ RMEDKDEGNY SCRTHTEKRP FKWSEPSEPL ENSTTRP00000004358/1-1417 VQEPVQQLGA LGRETFFTIQ RMEDKDEGNY SCRTHTEKRP FKWSEPSEPL bmy_04219T0/1-1514 VQEPVQQLGA LGREAFFTIQ RMEDKDEGNY SCRTHTEKHP FKWSEPSEPL BACU009602/1-1281 VQEPVQQLGA LGREAFFTIQ RMEDKDEGNY SCRTHTEKHP FKWSEPSEPL 1001 1050 ENSP00000359940/1-1341 ELVIKEMYPK PFFKTWASPV VTPGARVTFN CSTPHQHMSF ILYKDGSEIA ENSBTAP00000055715/1-1327 ELVIKEMYPK PFFETWTSPV VTPGSRVTFN CSTPQQHMSF ILYKDGSEVA ENSTTRP00000004358/1-1417 ELVIKEMYPK PLFKTWASPV VTPGARVTFN CSTPHQQMSF ILYKDGSEIA bmy_04219T0/1-1514 ELVIKEMYPK PLFKTWASPV VTPGARVTFN CSTPHQQMSF ILYKDGSEIA BACU009602/1-1281 ELVIKEMYPK PLFKTWASPV VTPGARVTFN CSTPHQQMSF ILYKDGSEIA 1051 1100 ENSP00000359940/1-1341 SSDRSWASPG ASAAHFLIIS VGIGDGGNYS CRYYDFSIWS EPSDPVELVV ENSBTAP00000055715/1-1327 SSDSSWASLG ASAAHFLIIS VGIGDGGNYS CRYYDFAIWS EPSDPVELVV ENSTTRP00000004358/1-1417 SSDRSWASPG ASAAHFLIIS VGIGDGGNYS CRYYDFAIWS EPSDPVELVV bmy_04219T0/1-1514 SSDRSWASPG ASAAHFLIIS VGIGDGGNYS CRYYDFAIWS EPSDPVELV- BACU009602/1-1281 SSDRSWASPG ASAAHFLIIS VGIGDGGNYS CRYYDFAIWS EPSDPVELVV 1101 1150 ENSP00000359940/1-1341 TEFYPKPTLL AQPGPVVFPG KSVILRCQGT FQGMRFALLQ EGAHVPLQFR ENSBTAP00000055715/1-1327 TEFYPKPTLL AHPGPVVLPG KNVTLRCQGA FEGMRFALLQ EGTPGPLQFR ENSTTRP00000004358/1-1417 TEFYPKPTLL AQPGPVVLPG KNVTLRCQGT FQGMRFALLQ EGTQVPLQFQ bmy_04219T0/1-1514 ---------- --PGPVVLPG KNVTLRCQGA FQGMRFALLQ EGTQVPLQFQ BACU009602/1-1281 TEFYPKPTLL AQPGPVVLPG KNVTLRCQGA FQGMRFALLQ EGTQVPLQFQ 1151 1200 ENSP00000359940/1-1341 SVSGNSADFL LHTVGAEDSG NYSCIYYETT MSNRGSYLSM PLMIWVTDTF ENSBTAP00000055715/1-1327 SASGNSADFL LHTVGAEDSG NYSCVYFETT MSNRGSYLSK PLMIWVTDTF ENSTTRP00000004358/1-1417 SASGNVADFP LHAVGADDSG NYSCVYYETT MSNRGSYLSK PLMIWVTDTF bmy_04219T0/1-1514 SASGNVADFL LHTVGADDSG NYSCIYYETT MSNRGSYLSK PLXIWVTDTF BACU009602/1-1281 SASGNVADFL LHTVGADDSG NYSCVYYETT MSNRGSYLSK PLMIWVTDTF 1201 1250 ENSP00000359940/1-1341 PKPWLFAEPS SVVPMGQNVT LWCRGPVHGV GYILHKEGEA TSMQLWGSTS ENSBTAP00000055715/1-1327 PKPRLFAEPS SVVPVGQNVT LWCQGPVHGV GYILHKEIEA TSVQLWGSTS ENSTTRP00000004358/1-1417 PKPWLFAEPS SVVPMGQNVT LWCQGPVHGV GYILHKEIEA TSVQLWGSIS bmy_04219T0/1-1514 PKPWLFAEPS SVVPMGQNVT LWCQGPVHGV GYILHKEIEA TSVQLWGSIS BACU009602/1-1281 PKPWLFAEPS SVVPMGQNVT LWCQGPVHGV GYILHKEIEA TSVQLWGSSS 1251 1300 ENSP00000359940/1-1341 NDGAFPITNI SGTSMGRYSC CYHPDWTSSI KIQPSNTLEL LVTGLLPKPS ENSBTAP00000055715/1-1327 NDGAFPITNV SGASIGRYSC CYHPDWTSLI KIQPSNTLEL IVTGLLPKPS ENSTTRP00000004358/1-1417 NDGAFPITNI SGANIGRYSC CYHPDWTSPI KIQPSNTLEL IVTGLLPKPS bmy_04219T0/1-1514 NDGAFPITNI SGANIGRYSC CYHPDWTSPI KIQPSNTLEL IVTGLLPKPS BACU009602/1-1281 NDGAFPIANI SSANIGRYSC CYHPDWTSPI KIQPSNTLEL IVTGLLPKPS 1301 1350 ENSP00000359940/1-1341 LLAQPGPMVA PGENMTLQCQ GELPDSTFVL LKEGAQEPLE QQRPSGYRAD ENSBTAP00000055715/1-1327 LLAQPGPMVA PGENMTLQCQ GELADSTFVL LKKGIQEPLK QQRPNGYRAD ENSTTRP00000004358/1-1417 LLAQPGPMVA PGENMTLQCQ GELPDSTFVL LKKGTQEPLR QQRPRGYRAD bmy_04219T0/1-1514 LLAQPGPMVA PGENMTLQCQ GELPDSTFVL LKKGTQEPLR QQRPRGYRAD BACU009602/1-1281 LLAQPGPMVA PGENMTLQCQ GELPDSTFVL LKKGTQEPLR QQRPRGYRAD 1351 1400 ENSP00000359940/1-1341 FWMPAVRGED SGIYSCVYYL DSTPFAASNH SDSLEIWVTD KPPKPSLSAW ENSBTAP00000055715/1-1327 FWMPAVSSED SGMYSCVYYL DSAPLAASNH SDSLEIWVTD KPPKPSLSAS ENSTTRP00000004358/1-1417 FRMPAVSSED SGMYSCVYYL DSAPFAASNL SDSLEIWVTD KPPKPSLSAS bmy_04219T0/1-1514 FWMPAVSSED SGMYSCVYYL DSAPFAASNH SDSLEIWVTD KPPKPSLSAW BACU009602/1-1281 FWMPAVSSED SGMYSCVYYL DSAPFAASNH SDSLEIWVTD KPPKPSLSAW 1401 1450 ENSP00000359940/1-1341 PSTMFKLGKD ITLQCRGPLP GVEFVLEHDG EEAPQQFSED GDFVINNVEG ENSBTAP00000055715/1-1327 PSTVFKLGKD ITLQCRGPLP GVEFVLEHDG EEAPQQFSED GDFVINNVEG ENSTTRP00000004358/1-1417 PSTVFKLGKD ITLQCRGPLP GVEFVLEHDG EEAPQQFSED GDFVINNVEG bmy_04219T0/1-1514 PSTVFKLGKD ITLQCRGPLP GVEFVLEHDG EEAPQQFSED GDFVINNVEG BACU009602/1-1281 PSTVFKLGKD ITLQCRGPLP GVEFVLEHDG EEAPQQFSED GDFVINNVEG 1451 1500 ENSP00000359940/1-1341 KGIGNYSCSY RLQAYPDIWS EPSDPLELVG AAGPVAQECT VGNIVRSSLI ENSBTAP00000055715/1-1327 KGIGNYSCSY RLQAYPDIWS EPSDTLELVG AAGPAAQECT VGNIVRSTLI ENSTTRP00000004358/1-1417 KGIGNYSCSY RLQAYPDIWS EPSDPLELVG AAGPAAQECT VGNIVRSTLI bmy_04219T0/1-1514 KGIGNYSCSY RLQAYPDIWS EPSDPLELVG AAGPAAQECT VGNIVRSTLI BACU009602/1-1281 KGIGNYSCSY RLQAYPDIWS EPSDPLELVG AAGPAAQECT VGNIVRSTLI 1501 1550 ENSP00000359940/1-1341 VVVVVALGVV LAIEWKKWPR LRTRGSETDG RDQTIALEEC NQEGEPGTPA ENSBTAP00000055715/1-1327 VVVVVALGVV LAIEWKKWPR LRTRGSETDG RDQTIALEEC NQEGDLGTST ENSTTRP00000004358/1-1417 VVVVVALGVV LAIEWKKWPR LRTRGSETDG RDQTIALEEC NQEGDLGTNT bmy_04219T0/1-1514 VVVVVALGVV LAIEWKKWPR LRTRGSETDG RDQTIALEEC NQEGDLGTNT BACU009602/1-1281 VVVVVALGVV LAIEWKKWPR LPTRGSETDG RDQTIALEEC NQEGDLGTNT 1551 1600 ENSP00000359940/1-1341 NSPSSTSQRI SVELPVPI ENSBTAP00000055715/1-1327 DSPSSVSQGT SVEQPVPI ENSTTRP00000004358/1-1417 NSPSSISQGT SVELPVPI bmy_04219T0/1-1514 NSPSSISQGT SVELPVPI BACU009602/1-1281 NSPSSISQGT SVELPVPI