KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:15 2014 Check: 00 .. Name: ENSTTRP00000011497/1-535 Len: 706 Check: 1538 Weight: 1.00 Name: bmy_05367T0/1-344 Len: 706 Check: 6607 Weight: 1.00 Name: BACU016196/1-630 Len: 706 Check: 2428 Weight: 1.00 Name: ENSP00000376921/1-530 Len: 706 Check: 5683 Weight: 1.00 Name: ENSBTAP00000055720/1-595 Len: 706 Check: 2251 Weight: 1.00 // 1 50 ENSTTRP00000011497/1-535 MLHLLALFLH CLPLASGDYD ICKSWVTTDE GPTWEFYACQ PKVMRLKDYV bmy_05367T0/1-344 ---------- ---------- ---------- MPT-----CA PR-------- BACU016196/1-630 MLHLLALFLH CLPLASGDYD ICKSWVTTDE GPSWEFYACQ PKVMRLKDYV ENSP00000376921/1-530 MLHLLALFLH CLPLASGDYD ICKSWVTTDE GPTWEFYACQ PKVMRLKDYV ENSBTAP00000055720/1-595 MLRLLALLLH CLALASGDYD ICKSWVTTDE GPTWEFYACQ PKVMRLKDYV 51 100 ENSTTRP00000011497/1-535 KVKVEPSGIT CGDPPERFCS HXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05367T0/1-344 ------ARAA CG-------- ---------A SASTTP---- ---------- BACU016196/1-630 KVKVEPSGIT CGDPPERFCS HENPYLCSNE CDASNPDLAH PPQLMFDRED ENSP00000376921/1-530 KVKVEPSGIT CGDPPERFCS HENPYLCSNE CDASNPDLAH PPRLMFDKEE ENSBTAP00000055720/1-595 KVKVEPSGIT CGDPPERFCS HENPYLCSNE CDASNPDLAH PPRLMFDRED 101 150 ENSTTRP00000011497/1-535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05367T0/1-344 ---------- -----PAP-- ---------- ---------- ---------- BACU016196/1-630 EGLATYWQSV TWSRYPSPLE ANITLSWNKS VELTDDVVVT FEYGRPTVMV ENSP00000376921/1-530 EGLATYWQSI TWSRYPSPLE ANITLSWNKT VELTDDVVMT FEYGRPTVMV ENSBTAP00000055720/1-595 EGLATYWQSV TWSRYPSPLE ANITLSWNKS VELTDDVVVT FEYGRPTVMV 151 200 ENSTTRP00000011497/1-535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_05367T0/1-344 ---------- ---------- -------TAA RARGASARGP G--------- BACU016196/1-630 LEKSLDNGRT WQPYQFYAED CMEAFGMPAR RARDLSASGA HRVLCTEEYS ENSP00000376921/1-530 LEKSLDNGRT WQPYQFYAED CMEAFGMSAR RARDMSSSSA HRVLCTEEYS ENSBTAP00000055720/1-595 LEKSLDNGRT WQPYQFYAED CMEAFGMPAR RARDLSASGA HRVLCTEEYS 201 250 ENSTTRP00000011497/1-535 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXLT bmy_05367T0/1-344 ---------- ---------- ---------- ---------- ---------- BACU016196/1-630 RWAGSKKEKH VRFEVRDRFA IFAGPSLRNM DNLYTRLESA KGLKEFFTLT ENSP00000376921/1-530 RWAGSKKEKH VRFEVRDRFA IFAGPDLRNM DNLYTRLESA KGLKEFFTLT ENSBTAP00000055720/1-595 RWAGSKKEKH VRFEVRDRFA IFAGPDLRNM DNLYTRLESA KGLKEFFTLT 251 300 ENSTTRP00000011497/1-535 DLRMRLLRPA LGGTYVQREN LYKYFYAISN IEVMGR---- ---------- bmy_05367T0/1-344 ---------- ---------- ---------- ----GR---- ---------- BACU016196/1-630 DLRMRLLRPA LGGTYVQREN LYKYFYAISN IEVMGRMLCD TWDITWYLEC ENSP00000376921/1-530 DLRMRLLRPA LGGTYVQREN LYKYFYAISN IEVIGR---- ---------- ENSBTAP00000055720/1-595 DLRMRLLRPA LGGTYVQREN LYKYFYAISN IEVTGR---- ---------- 301 350 ENSTTRP00000011497/1-535 ---------- ---------- ---------- ---------- ---------- bmy_05367T0/1-344 ---------- ---------- ---------- ---------- ---------- BACU016196/1-630 YLVLHQRGYL CFSMEGGTRQ LEKKKRISDL EEMAASGLLS GGQAAQPASD ENSP00000376921/1-530 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055720/1-595 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000011497/1-535 -CKCNLHANL CSVREGSLQC ECEHNTTGPD CGKCKRSFRT RSWRAGSYLP bmy_05367T0/1-344 ---------- ---------- -------APT C-RCPTALPT R--------- BACU016196/1-630 GCKCNLHANL CSVREGSLQC ECEHNTTGPD CGKCKRSFRT RSWRAGSYLP ENSP00000376921/1-530 -CKCNLHANL CSMREGSLQC ECEHNTTGPD CGKCKKNFRT RSWRAGSYLP ENSBTAP00000055720/1-595 -CKCNLHANL CSVREGSLQC ECEHNTTGPD CGKCKRSFRT RSWRAGSYLP 401 450 ENSTTRP00000011497/1-535 LPHGSPNACA APSCA----- ---------- ---------- RSTPG----- bmy_05367T0/1-344 ---------A AAGSAVGSIS RSRKDPVPKA PVAAVAVRGD PTTPAPSTST BACU016196/1-630 LPHGSPNACA AAGSAVGSIS RSRKDPVPKA PVAAVAVRGD PTTPAPSTST ENSP00000376921/1-530 LPHGSPNACA TAGSF----- ---------- ---------- ---------- ENSBTAP00000055720/1-595 LPHGSPNACA AAGSAVG--- ---------- ---------- ---------- 451 500 ENSTTRP00000011497/1-535 ---------- ---------- ---------- ---------- ---------- bmy_05367T0/1-344 AWAPMAPSTP QPTEWIRPST AAPLWASAPW PQVSSRAEAA GTSAAAPAPA BACU016196/1-630 AWAPMAPSTP QPTG----QP TLGSWTTADE RASFSSLQAA GTSTAAPAPA ENSP00000376921/1-530 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055720/1-595 ---------- ---KWSRPST AAPLWASAPW PQVSSSAEAA GTAPVAPAPA 501 550 ENSTTRP00000011497/1-535 ---------- ---------- ------LHCE CYGHSNRCSY IDFLNVVTCV bmy_05367T0/1-344 KASRLFQLRP KSPQVMPIEE F-----EDCE CYGHSNRCSY IDFLNVVTCV BACU016196/1-630 KASRLFQLRP KSPQVMPIEE F-----EDCE CYGHSNRCSY IDFLNVVTCV ENSP00000376921/1-530 ---------- ---------- ------GNCE CYGHSNRCSY IDFLNVVTCV ENSBTAP00000055720/1-595 KASKLFQLRP KSPQVMPVEE FEGSAGPDCE CYGHSNRCSY IDFLNVVTCV 551 600 ENSTTRP00000011497/1-535 SCKHNTRGQH CQHCRLGYYR NGSAELDDEN VCIECNCNQI GSVHDRCNET bmy_05367T0/1-344 SCKHNTRGQH CQHCRLGYYR NGSAELDDEN VCIECNCNQI GSVHDRCNET BACU016196/1-630 SCKHNTRGQH CQHCRLGYYR NGSAELDDEN VCIECNCNQI GSVHDRCNET ENSP00000376921/1-530 SCKHNTRGQH CQHCRLGYYR NGSAELDDEN VCIECNCNQI GSVHDRCNET ENSBTAP00000055720/1-595 SCKHNTRGQH CQHCRLGYYR NGSAELDDEN VCIECNCNQI GSVHDRCNET 601 650 ENSTTRP00000011497/1-535 GFCECREGAA GPKCDDCLPT HYWRQGCYPN VCDDDQLLCQ NGGTCVQNQR bmy_05367T0/1-344 GFCECREGAA GPKCDDCLPT HYWRQGCYPN VCDDDQLLCQ NGGTCVQNQR BACU016196/1-630 GFCECREGAT GPKCDDCLPT HYWRQGCYPS V--------- ---------- ENSP00000376921/1-530 GFCECREGAA GPKCDDCLPT HYWRQGCYPN VCDDDQLLCQ NGGTCLQNQR ENSBTAP00000055720/1-595 GFCECREGAA GPKCDDCLPT HYWRQGCYPN VCDDDQLLCQ NGGTCVQNQR 651 700 ENSTTRP00000011497/1-535 CACPRGYTGV RCEQPRCDPG AADGGLDCDR APGAAPCPAT LLGCLLLLRL bmy_05367T0/1-344 CACPRGYTGV RCEQPRCDPA AADGGLDCDR APGAAPCPAT LLGCLLLLRL BACU016196/1-630 --------GV KGEPTK---- ---------- ---------- ---------- ENSP00000376921/1-530 CACPRGYTGV RCEQPRCDPA DDDGGLDCDR APGAAPRPAT LLGCLLLLGL ENSBTAP00000055720/1-595 CACPRGYTGA RCEQPRCDPA DDEGGLDCDR APGAAPRPAT LLGCLLLLGL 701 750 ENSTTRP00000011497/1-535 ATCLDC bmy_05367T0/1-344 ATCLDC BACU016196/1-630 ------ ENSP00000376921/1-530 AARLGR ENSBTAP00000055720/1-595 AARLDC