KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:15 2014 Check: 00 .. Name: ENSP00000261326/1-888 Len: 891 Check: 2862 Weight: 1.00 Name: ENSBTAP00000055724/1-882 Len: 891 Check: 8493 Weight: 1.00 Name: ENSTTRP00000006755/1-882 Len: 891 Check: 5269 Weight: 1.00 Name: bmy_11342T0/1-882 Len: 891 Check: 9762 Weight: 1.00 Name: BACU001599/1-881 Len: 891 Check: 4850 Weight: 1.00 // 1 50 ENSP00000261326/1-888 MAGAAAESGR ELWTFAGSRD PSAPRLAYGY GPGSLRELRA REFSRLAGTV ENSBTAP00000055724/1-882 MAGGAAHPGA ELLPFARFLD SSLQPLVYGY GRGTLHELRA REFGRLAGTV ENSTTRP00000006755/1-882 MAGGAEQSGT ELLAFAQFLD SSPQPLAYGY GRRSLHELRA REFGRLAGTV bmy_11342T0/1-882 MAGGAGRSGA ELLAFAQFLD SSPQPLVYGY GRRSLHELRA REFGRLAGTV BACU001599/1-881 --------GA ELLAFAQFLD SSPQPLVYGY GRRNLHELRA REFGRLAGTV 51 100 ENSP00000261326/1-888 YLDHAGATLF SQSQLESFTS DLMENTYGNP HSQNISSKLT HDTVEQVRYR ENSBTAP00000055724/1-882 YLDHAGTTLF PQSQITSFMK DLMENVYGNP HSQNISSKLT HDTVEQVRFR ENSTTRP00000006755/1-882 YLDHAGATLF PQSQLTSFTK DLMENVYGNP HSQNSSSRLT HDTVEQVRYR bmy_11342T0/1-882 YLDHAGATLF PQSQLTSFTK DLMENVYGNP HSQNVSSKLT HDTVEQVRYR BACU001599/1-881 YLDHAGATLF PQSQLTSFTK DLMENVYGNP HSQNISSKLT HDTVEQVRYR 101 150 ENSP00000261326/1-888 ILAHFHTTAE DYTVIFTAGS TAALKLVAEA FPWVSQGPES SGSRFCYLTD ENSBTAP00000055724/1-882 ILAHFHTSPE DYTVIFTSGS TAALKLVAEA FPWVSPGPEG SGSCFCYLTD ENSTTRP00000006755/1-882 ILAHFHTSPE DYTVIFTAGS TAALKLVAEA FPWVPPGPES SGSHFCYLTD bmy_11342T0/1-882 ILAHFHTSPE DYTVIFTAGS TAALKLVAEA FPWVSPGPES SGSHFCYLTD BACU001599/1-881 ILAHFHTSPE DYTVIFTAGS TAALKLVAEA FPWVSPGPES SGSRFCYLTD 151 200 ENSP00000261326/1-888 SHTSVVGMRN VTMAINVIST PVRPEDLWSA EERSASASN- PDCQLPHLFC ENSBTAP00000055724/1-882 SHTSVVGMRK ITAAMNVSSI PVRPEDMWSA ERQDAAAAGD PAGQPPHLFC ENSTTRP00000006755/1-882 SHTSVVGMRE VVAAMNITSI PVRPEDMWLA EEQDATAASD PDGQPLHLFC bmy_11342T0/1-882 SHTSVVGMRE VTAAMNITSI PVRPEDMWLA GEQDAAAASD PNGQPLHLFC BACU001599/1-881 SHTSVVGMRE VTAAMNITSI PVRPEDMWLA EKQDAAAASD PNGQPLHLFC 201 250 ENSP00000261326/1-888 YPAQSNFSGV RYPLSWIEEV KSGRLHPVST PGKWFVLLDA ASYVSTSPLD ENSBTAP00000055724/1-882 YPAQSNFSGT RYPLSWIGEV KSGRRRPASR PGKWFVLLDA AAFVGTSPLD ENSTTRP00000006755/1-882 YPAQSNFSGT RYPLSWIEEV KSGRMCPVGG PGKWFVLLDA AAYVGTSPLD bmy_11342T0/1-882 YPAQSNFSGT RYPLSWIEEV KSGRMRPVSG PGKWFVLLDA AAYVGTSPLD BACU001599/1-881 YPAQSNFSGT RYPLSWIEEV KAGRMRPVSG PGKWFVLLDA AAYVGTSPLD 251 300 ENSP00000261326/1-888 LSAHQADFVP ISFYKIFGFP TGLGALLVHN RAAPLLRKTY FGGGTASAYL ENSBTAP00000055724/1-882 LSVHQADFVP ISFYKIFGFP TGLGALLVNN RLAALLRKTY FGGGTAAAYL ENSTTRP00000006755/1-882 LSVHRADFVP LSFYKIFGFP TGLGALLVNS RSAPLLRKTY FGGGTATAYL bmy_11342T0/1-882 LSVHRADFVP LSFYKIFGFP TGLGALLVNS RSAPLLRKTY FGGGTAAAYL BACU001599/1-881 LSVHRADFVP LSFYKIFGFP TGLGALLVNS RSAPLLRKTY FGGGTAAAYL 301 350 ENSP00000261326/1-888 AGEDFYIPRQ SVAQRFEDGT ISFLDVIALK HGFDTLERLT GGMENIKQHT ENSBTAP00000055724/1-882 AGDDFYVPRE SVAERFEDGT ISFLDVIALK HGFDALERLT GGMESIRQHT ENSTTRP00000006755/1-882 AEEDFYIPRE SVAERFEDGT ISFLDVIALK HGFDVLERLT GGMENIRQHT bmy_11342T0/1-882 AEEDFYIPRE SVAERFEDGT ISFLDVIALK HGFDVLERLT GGMENIRQHT BACU001599/1-881 AEEDFYIPRE SVAERFEDGT ISFLDVIALK HGFDALERLT GGMENIRQHT 351 400 ENSP00000261326/1-888 FTLAQYTYVA LSSLQYPNGA PVVRIYSDSE FSSPEVQGPI INFNVLDDKG ENSBTAP00000055724/1-882 FTLAQYTYTA LSSLRYPNGA PVVQIYSDSD FSSPEVQGPV ISFNVLDDHG ENSTTRP00000006755/1-882 FTLARYTYAA LSALRYPNGA PVAQIYSDSE FSSPEVQGPV ISFNVLDDNG bmy_11342T0/1-882 FTLAQYTYAA LSTLRYPNGA PVVQIYSDSE FSSPEVQGPV ISFNVLDDNG BACU001599/1-881 FTLAQYTYAA LSTLRYPNGA PVVQIYSDSE FSSPEVQGPV ISFNVLDDNG 401 450 ENSP00000261326/1-888 NIIGYSQVDK MASLYNIHLR TGCFCNTGAC QRHLGISNEM VRKHFQAGHV ENSBTAP00000055724/1-882 NVVGYSQVDK MASLHNIHVR TGCFCNTGAC QRHLGISDEM VKKHLQAGHV ENSTTRP00000006755/1-882 NIIGYSQVDK MASLHNIHVR TGCFCNTGAC QRHLGISDEM IKKHLQAGHV bmy_11342T0/1-882 NIIGYSQVDK MASLHNIHVR TGCFCNTGAC QRHLGISDEM IKKHLQAGHV BACU001599/1-881 NIIGYSQVDK MASLHNIHVR TGCFCNTGAC QRHLGISDEM IKKHLQAGHV 451 500 ENSP00000261326/1-888 CGDNMDLIDG QPTGSVRISF GYMSTLDDVQ AFLRFIIDTR LHSSGDWPVP ENSBTAP00000055724/1-882 CGDDVDLIDG QPTGSVRISF GYMSTLEDAQ AFLRFIIATR LHSSHGQPLP ENSTTRP00000006755/1-882 CGDDVDLIDG QPTGSVRISF GYMSTLEDAQ AFLRFIIATR LRPSHGQPLP bmy_11342T0/1-882 CGDDVDLIDG QPTGSVRISF GYMSTLEDAQ AFLRFIIATX LRPSHGQPLP BACU001599/1-881 CGDDVDLIDG QPTGSVRISF GYMSTLEDAQ AFLRFIIATR LRPSHGQPLP 501 550 ENSP00000261326/1-888 QAHADTGETG APSADSQA-D VIPAVMGRRS LSPQEDALTG SRVWNNS-ST ENSBTAP00000055724/1-882 LATP--GEAG APPEDSEAQN AVPAARARGS SSPQEDTSPH SGVWNNSPTA ENSTTRP00000006755/1-882 LH----GEAG ALSAES---- -LPATRARRS PSPQEDASPD SRVWNNAPTT bmy_11342T0/1-882 LATP--GEAG ALPAESEAQN AVPATRARRS PSPQEDASPX SRVWDNSPTT BACU001599/1-881 LATP--GEAG ALPAESEAPN AVPATRARRS PSPQEDASPD ARVWDNSPTT 551 600 ENSP00000261326/1-888 VNAVPVAPPV CDVARTQPTP SEKAAGVLEG ALGPHVVTNL YLYPIKSCAA ENSBTAP00000055724/1-882 VDAEGLCPPL LEATGTQQTT SEKAADVPDG DLRSHVITNL FLYPIKSCAA ENSTTRP00000006755/1-882 VDAVSLRPPL LETTRTQQTP SEKAAGILDG GLGSHIVTNL FLYPIKSCAA bmy_11342T0/1-882 VDAVSLRPPL LETTRTQQTP SEKAAGILDG GLGSHIVTNL FLYPIKSCAA BACU001599/1-881 VDAVSLRPPL LETTRTQQTP SEKAAGIPDG GLGSHIVTNL FLYPIKSCAA 601 650 ENSP00000261326/1-888 FEVTRWPVGN QGLLYDRSWM VVNHNGVCLS QKQEPRLCLI QPFIDLRQRI ENSBTAP00000055724/1-882 FEVIRWPLGS QGLLYDRSWM VVNHNGICLS QKQEPRLCLI QPFIDLQRRI ENSTTRP00000006755/1-882 FEVTRWPLGN QGLLYDRSWM VVNHNGVCLS QKQEPRLCLI QPFIDLQRRI bmy_11342T0/1-882 FEVTRWPLGN QGLLYDRSWM VVNHNGICLS QKQEPRLCLI QPFIDLQQRI BACU001599/1-881 FEVTRWPLGN QGLLYDRSWM VVNHNGICLS QKQEPRLCLI QPFIDLQQRI 651 700 ENSP00000261326/1-888 MVIKAKGMEP IEVPLEENSE RTQIRQSRVC ADRVSTYDCG EKISSWLSTF ENSBTAP00000055724/1-882 MVIKAQGMEP IEVPLEENSE QVQICQSKVC ADRVNTYDCG EKISNWLSKF ENSTTRP00000006755/1-882 MVINAQGMEP IAVSLEENSK PAQICQSKVC ADRVNTYDCG EKISSWLSKF bmy_11342T0/1-882 MVIKAQGMEP IAVPLEENSK PAQICQSKVC ADRVNTYDCG EKISSWLSKF BACU001599/1-881 MVIKAQGMEP IAVPLEENSK PAQICQSKVC ADRINIYDCG EKISSWLSKF 701 750 ENSP00000261326/1-888 FGRPCHLIKQ SSNSQRNAKK KHGKDQLPGT MATLSLVNEA QYLLINTSSI ENSBTAP00000055724/1-882 FGRPYHLIKQ SSDFQRNAKK KHGKDQSAHT TATLSLVNEA QYLLINRSSI ENSTTRP00000006755/1-882 FGRPYHLIRQ SSDFQRNARK KRGKDQSACT TATLSLVNEA QYLLINRSSV bmy_11342T0/1-882 FGRPYHLIKQ SSDFQRSARK KRGK------ -ATLSLVNEA QYLLINRSSV BACU001599/1-881 FGRPCHLIKQ SSDFQRNARK KRGKDQSACT TATLSLVNEA QYLLINRSSV 751 800 ENSP00000261326/1-888 LELHRQLNTS DENGKEELFS LKDLSLRFRA NIIINGKRAF EEEKWDEISI ENSBTAP00000055724/1-882 LELQQQLSTS CENGKEELFP MNNLISRFRA NIITNGTRAF EEEKWDEISI ENSTTRP00000006755/1-882 LELQQQLSTS DENGKEELFP VNNLISRFRA NIITSGTRAF EEEKWDEISV bmy_11342T0/1-882 LELQRQLSTS DENGKEELFP VNNLISRFRA NIITNGTRAF EEEKWDEISV BACU001599/1-881 LELQRQLSTS DENGKEELFP VNNLISRFRA NIITNGTRAF EEEKWDEISV 801 850 ENSP00000261326/1-888 GSLRFQVLGP CHRCQMICID QQTGQRNQHV FQKLSESRET KVNFGMYLMH ENSBTAP00000055724/1-882 GSLRFQVLGP CHRCQMICID QQTGQRNQDV FQKLSERRER KVKFGVYLMH ENSTTRP00000006755/1-882 GSLHFQVLGP CHRCQMICID QQTGQRNRNV FQKLSERRER KVNFGLYLMH bmy_11342T0/1-882 GSLHFQVLGP CHRCQMICID QQTGQRNRNV FQKLSERRER KVNFGLYLMH BACU001599/1-881 GSLHFQVVGP CHRCQMICID QQTGQRNQNV FQKLSERRER KVNFGLYLMH 851 900 ENSP00000261326/1-888 ASLDLSSPCF LSVGSQVLPV LKENVEGHDL PASEKHQDVT S ENSBTAP00000055724/1-882 TSLDLSSPCY LSVGSQVLPL LKENMEHHDI PATE------ - ENSTTRP00000006755/1-882 TSLDLSSPCY LSVGSQVLPV LKENIEHYDL PASEKQQEVI S bmy_11342T0/1-882 TSLDLSSPCY LSVGSQVLPV LKENIEHYDL PASEEHQEVI S BACU001599/1-881 TSLDLSSPCY LSVGSQVLPV LKENIEHYDL PASEKHQEVI S