KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:18 2014 Check: 00 .. Name: ENSTTRP00000000114/1-1081 Len: 1097 Check: 5780 Weight: 1.00 Name: BACU001996/1-1038 Len: 1097 Check: 5187 Weight: 1.00 Name: bmy_00962T0/1-1039 Len: 1097 Check: 2919 Weight: 1.00 Name: ENSP00000252512/1-1087 Len: 1097 Check: 4496 Weight: 1.00 Name: ENSBTAP00000055736/1-1087 Len: 1097 Check: 4802 Weight: 1.00 // 1 50 ENSTTRP00000000114/1-1081 -------SLA QLENLCKQLY ETTDTTTRLQ AEKALVEFTN SPDCLSKCQL BACU001996/1-1038 MRDPGRKSLA QLENLCKQLY ETTDTTTRLQ AEKALVEFTN SPDCLSKCQL bmy_00962T0/1-1039 --TNLFQSLA QLENLCKQLY ETTDTTTRLQ AEKALVEFTN SPDCLSKCQL ENSP00000252512/1-1087 -MADHVQSLA QLENLCKQLY ETTDTTTRLQ AEKALVEFTN SPDCLSKCQL ENSBTAP00000055736/1-1087 -MADHVQSLA QLENLCKQLY ETTDTTTRLQ AEKALVEFTN SPDCLSKCQL 51 100 ENSTTRP00000000114/1-1081 LLERGSSSYS QLLAATCLTK LVSRTNNPLP LEQRIDIRNY VLNYLATRPK BACU001996/1-1038 LLERGSSSYS QLLAATCLTK LVSRTNNPLP LEQRIDIRNY VLNYLATRPK bmy_00962T0/1-1039 LLERG----- ---------- ---------- -------RNY VLNYLATRPK ENSP00000252512/1-1087 LLERGSSSYS QLLAATCLTK LVSRTNNPLP LEQRIDIRNY VLNYLATRPK ENSBTAP00000055736/1-1087 LLERGSSSYS QLLAATCLTK LVSRTNNPLP LEQRIDIRNY VLNYLATRPK 101 150 ENSTTRP00000000114/1-1081 LATFVTQALI QLYARITKLG WFDCQKDDYV FRNAITDVTR FLQDSVEYCI BACU001996/1-1038 LATFVTQALI QLYARITKLG WFDCQKDDYV FRNAITDVTR FLQDSVEYCI bmy_00962T0/1-1039 LATFVTQALI QLYARITKLG WFDCQKDDYV FRNAITDVTR FLQDSVEYCI ENSP00000252512/1-1087 LATFVTQALI QLYARITKLG WFDCQKDDYV FRNAITDVTR FLQDSVEYCI ENSBTAP00000055736/1-1087 LATFVTQALI QLYARITKLG WFDCQKDDYV FRNAITDVTR FLQDSVEYCI 151 200 ENSTTRP00000000114/1-1081 IGVTILSQLT NEINQ----- ----ADTTHP LTKHRKIASS FRDSSLFDIF BACU001996/1-1038 IGVTILSQLT NEINQVSATA FLIEADTTHP LTKHRKIASS FRDSSLFDIF bmy_00962T0/1-1039 IGVTILSQLT NEINQVSATA FLIEADTTHP LTKHRKIASS FRDSSLFDIF ENSP00000252512/1-1087 IGVTILSQLT NEINQ----- ----ADTTHP LTKHRKIASS FRDSSLFDIF ENSBTAP00000055736/1-1087 IGVTILSQLT NEINQ----- ----ADTTHP LTKHRKIASS FRDSSLFDIF 201 250 ENSTTRP00000000114/1-1081 TLSCNLLKQA SGKNLNLNDE SQHGLLMQLL KLTHNCLNFD FIGTSTDESS BACU001996/1-1038 TLSCNLLKQA SGKNLNLNDE SQHGLLMQLL KLTHNCLNFD FIGTSTDESS bmy_00962T0/1-1039 TLSCNLLKQA SGKNLNLNDE SQHGLLMQLL KLTHNCLNFD FIGTSTDESS ENSP00000252512/1-1087 TLSCNLLKQA SGKNLNLNDE SQHGLLMQLL KLTHNCLNFD FIGTSTDESS ENSBTAP00000055736/1-1087 TLSCNLLKQA SGKNLNLNDE SQHGLLMQLL KLTHNCLNFD FIGTSTDESS 251 300 ENSTTRP00000000114/1-1081 DDLCTVQIPT SWRSAFLDSS TLQLFFDLYH SIPPSFSPLV LSCLVQIASV BACU001996/1-1038 DDLCTVQIPT SWRSAFLDSS TLQLFFDLYH SIPPSFSPLV LSCLVQIASV bmy_00962T0/1-1039 DDLCTVQIPT SWRSAFLDSS TLQLFFDLYH SIPPSFSPLV LSCLVQIASV ENSP00000252512/1-1087 DDLCTVQIPT SWRSAFLDSS TLQLFFDLYH SIPPSFSPLV LSCLVQIASV ENSBTAP00000055736/1-1087 DDLCTVQIPT SWRSAFLDSS TLQLFFDLYH SIPPSFSPLV LSCLVQIASV 301 350 ENSTTRP00000000114/1-1081 RRSLFNNAER AKFLSHLVDG VKRILENPQS LSDPNNYHEF CRLLARLKSN BACU001996/1-1038 RRSLFNNAER AKFLSHLVDG VKRILENPQS LSDPNNYHEF CRLLARLKSN bmy_00962T0/1-1039 RRSLFNNAER AKFLSHLVDG VKRILENPQS LSDPNNYHEF CRLLARLKSN ENSP00000252512/1-1087 RRSLFNNAER AKFLSHLVDG VKRILENPQS LSDPNNYHEF CRLLARLKSN ENSBTAP00000055736/1-1087 RRSLFNNAER AKFLSHLVDG VKRILENPQS LSDPNNYHEF CRLLARLKSN 351 400 ENSTTRP00000000114/1-1081 YQLGELVKVE NYPEVIRLIA NFTVTSLQHW EFAPNSVHYL LSLWQRLAAS BACU001996/1-1038 YQLGELVKVE NYPEVIRLIA NFTVTSLQHW EFAPNSVHYL LSLWQRLAAS bmy_00962T0/1-1039 YQLGELVKVE NYPEVIRLIA NFTVTSLQHW EFAPNSVHYL LSLWQRLAAS ENSP00000252512/1-1087 YQLGELVKVE NYPEVIRLIA NFTVTSLQHW EFAPNSVHYL LSLWQRLAAS ENSBTAP00000055736/1-1087 YQLGELVKVE NYPEVIRLIA NFTVTSLQHW EFAPNSVHYL LSLWQRLAAS 401 450 ENSTTRP00000000114/1-1081 VPYVKATEPH MLETYTPEVT KAYITSRLES VHIILRDGLE DPLEDTGLVQ BACU001996/1-1038 VPYVKATEPH MLETYTPEVT KAYITSRLES VHIILRDGLE DPLEDTGLVQ bmy_00962T0/1-1039 VPYVKATEPH MLETYTPEVT KAYITSRLES VHIILRDGLE DPLEDTGLVQ ENSP00000252512/1-1087 VPYVKATEPH MLETYTPEVT KAYITSRLES VHIILRDGLE DPLEDTGLVQ ENSBTAP00000055736/1-1087 VPYVKATEPH MLETYTPEVT KAYITSRLES VHIILRDGLE DPLEDTGLVQ 451 500 ENSTTRP00000000114/1-1081 QQLDQLSTIG RCEYEKTCAL LVQLFDQSAQ SYQELLQSAS ASPMDIAVQE BACU001996/1-1038 QQLDQLSTIG RCEYEKTCAL LVQLFDQSAQ SYQELLQSAS ASPMDIAVQE bmy_00962T0/1-1039 QQLDQLSTIG RCEYEKTCAL LVQLFDQSAQ SYQELLQSAS ASPMDIAVQE ENSP00000252512/1-1087 QQLDQLSTIG RCEYEKTCAL LVQLFDQSAQ SYQELLQSAS ASPMDIAVQE ENSBTAP00000055736/1-1087 QQLDQLSTIG RCEYEKTCAL LVQLFDQSAQ SYQELLQSAS ASPMDIAVQE 501 550 ENSTTRP00000000114/1-1081 GRLTWLVYII GAVIGGRVSF ASTDEQDAMD GELVCRVLQL MNLTDSRLAQ BACU001996/1-1038 GRLTWLVYII GAVIGGRVSF ASTDEQDAMD GELVCRVLQL MNLTDSRLAQ bmy_00962T0/1-1039 GRLTWLVYII GAVIGGRVSF ASTDEQDAMD GELVCRVLQL MNLTDSRLAQ ENSP00000252512/1-1087 GRLTWLVYII GAVIGGRVSF ASTDEQDAMD GELVCRVLQL MNLTDSRLAQ ENSBTAP00000055736/1-1087 GRLTWLVYII GAVIGGRVSF ASTDEQDAMD GELVCRVLQL MNLTDSRLAQ 551 600 ENSTTRP00000000114/1-1081 AGNEKLELAM LSFFEQFRKI YIGDQVQKSS KLYRRLSEVL GLNDETMVLS BACU001996/1-1038 AGNEKLELAM LSFFEQFRKI YIGDQVQKSS KLYRRLSEVL GLNDETMVLS bmy_00962T0/1-1039 AGNEKLELAM LSFFEQFRKI YIGDQVQKSS KLYRRLSEVL GLNDETMVLS ENSP00000252512/1-1087 AGNEKLELAM LSFFEQFRKI YIGDQVQKSS KLYRRLSEVL GLNDETMVLS ENSBTAP00000055736/1-1087 AGNEKLELAM LSFFEQFRKI YIGDQVQKSS KLYRRLSEVL GLNDETMVLS 601 650 ENSTTRP00000000114/1-1081 VFIGKIITNL KYWGRCEPIT SKTLQLLNDL SIGYSSVRKL VKLSAVQFML BACU001996/1-1038 VFIGKI---- ---------- ---------- -----SVRKL VKLSAVQFML bmy_00962T0/1-1039 VFIGKIITNL ---------- ---------- ----NSVRKL VKLSAVQFML ENSP00000252512/1-1087 VFIGKIITNL KYWGRCEPIT SKTLQLLNDL SIGYSSVRKL VKLSAVQFML ENSBTAP00000055736/1-1087 VFIGKIITNL KYWGRCEPIT SKTLQLLNDL SIGYSSVRKL VKLSAVQFML 651 700 ENSTTRP00000000114/1-1081 NNHTSEHFSF LGINNQSNLT DMRCRTTFYT ALGRLLMVDL GEDEDQYEQF BACU001996/1-1038 NNHTSEHFSF LGINNQSNLT DMRCRTTFYT ALGRLLMVDL GEDEDQYEQF bmy_00962T0/1-1039 NNHTSEHFSF LGINNQSNLT DMRCRTTFYT ALGRLLMVDL GEDEDQYEQF ENSP00000252512/1-1087 NNHTSEHFSF LGINNQSNLT DMRCRTTFYT ALGRLLMVDL GEDEDQYEQF ENSBTAP00000055736/1-1087 NNHTSEHFSF LGINNQSNLT DMRCRTTFYT ALGRLLMVDL GEDEDQYEQF 701 750 ENSTTRP00000000114/1-1081 MLPLTAAFEA VAQMFSTNSF NEQEAKRTLV GLVRDLRGIA FAFNAKTSFM BACU001996/1-1038 MLPLTAAFEA VAQMFSTNSF NEQEAKRTLV GLVRDLRGIA FAFNAKTSFM bmy_00962T0/1-1039 MLPLTAAFEA VAQMFSTNSF NEQEAKRTLV GLVRDLRGIA FAFNAKTSFM ENSP00000252512/1-1087 MLPLTAAFEA VAQMFSTNSF NEQEAKRTLV GLVRDLRGIA FAFNAKTSFM ENSBTAP00000055736/1-1087 MLPLTAAFEA VAQMFSTNSF NEQEAKRTLV GLVRDLRGIA FAFNAKTSFM 751 800 ENSTTRP00000000114/1-1081 MLFEWIYPSY MPILQRAIEL WYHDPACTTP VLKLMAELVH NRSQRLQFDV BACU001996/1-1038 MLFEWIYPSY MPILQRAIEL WYHDPACTTP VLKLMAELVH NRSQRLQFDV bmy_00962T0/1-1039 MLFEWIYPSY MPILQRAIEL WYHDPACTTP VLKLMAELVH NRSQRLQFDV ENSP00000252512/1-1087 MLFEWIYPSY MPILQRAIEL WYHDPACTTP VLKLMAELVH NRSQRLQFDV ENSBTAP00000055736/1-1087 MLFEWIYPSY MPILQRAIEL WYHDPACTTP VLKLMAELVH NRSQRLQFDV 801 850 ENSTTRP00000000114/1-1081 SSPNGILLFR ETSKMITMYG NRILTLGEVP KDQVYALKLK GISICFSMLK BACU001996/1-1038 SSPNGILLFR ETSKMITMYG NRILTLGEVP KDQVYALKLK GISICFSMLK bmy_00962T0/1-1039 SSPNGILLFR ETSKMITMYG NRILTLGEVP KDQVYALKLK GISICFSMLK ENSP00000252512/1-1087 SSPNGILLFR ETSKMITMYG NRILTLGEVP KDQVYALKLK GISICFSMLK ENSBTAP00000055736/1-1087 SSPNGILLFR ETSKMITMYG NRILTLGEVP KDQVYALKLK GISICFSMLK 851 900 ENSTTRP00000000114/1-1081 AALSGSYVNF GVFRLYGDDA LDNALQTFIK LLLSIPHSDL LDYPKLSQSY BACU001996/1-1038 AALSGSYVNF GVFRLYGDDA LDNALQTFIK LLLSIPHSDL LDYPKLSQSY bmy_00962T0/1-1039 AALSGSYVNF GVFRLYGDDA LDNALQTFIK LLLSIPHSDL LDYPKLSQSY ENSP00000252512/1-1087 AALSGSYVNF GVFRLYGDDA LDNALQTFIK LLLSIPHSDL LDYPKLSQSY ENSBTAP00000055736/1-1087 AALSGSYVNF GVFRLYGDDA LDNALQTFIK LLLSIPHSDL LDYPKLSQSY 901 950 ENSTTRP00000000114/1-1081 YSLLEVLTQD HMNFIASLEP HVIMYILSSI SEGLTALXXX XXXXXXXXXX BACU001996/1-1038 YSLLEVLTQD HMNFIASLEP HVIMYILSSI SEGLTALDTM VCTGCCSCLD bmy_00962T0/1-1039 YSLLEVLTQD HMNFIASLEP HVIMYILSSI SEGLTALDTM VCTGCCSCLD ENSP00000252512/1-1087 YSLLEVLTQD HMNFIASLEP HVIMYILSSI SEGLTALDTM VCTGCCSCLD ENSBTAP00000055736/1-1087 YSLLEVLTQD HMNFIASLEP HVIMYILSSI SEGLTALDTM VCTGCCSCLD 951 1000 ENSTTRP00000000114/1-1081 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XMLSTVLNII BACU001996/1-1038 HIVTYLFKQL SRSTKKRTTP LNQESDRFLH IMQQHPEMIQ QMLSTVLNII bmy_00962T0/1-1039 HIVTYLFKQL SRSTKKRTTP LNQESDRFLH IMQQHPEMIQ QMLSTVLNII ENSP00000252512/1-1087 HIVTYLFKQL SRSTKKRTTP LNQESDRFLH IMQQHPEMIQ QMLSTVLNII ENSBTAP00000055736/1-1087 HIVTYLFKQL SRSTKKRTTP LTQESDRFLH IMQQHPEMIQ QMLSTVLNII 1001 1050 ENSTTRP00000000114/1-1081 MFEDCRNQWC MSRPLLGLIV DNEKYFSDLR NSIVNSQPPE KQQAMHLCFE BACU001996/1-1038 IFEDCRNQWS MSRPLLGLIL LNEKYFSDLR NSIVNSQPPE KQQAMHLCFE bmy_00962T0/1-1039 IFEDCRNQWS MSRPLLGLIL LNEKYFSDLR NSIVNSQPPE KQQAMHLCFE ENSP00000252512/1-1087 IFEDCRNQWS MSRPLLGLIL LNEKYFSDLR NSIVNSQPPE KQQAMHLCFE ENSBTAP00000055736/1-1087 IFEDCRNQWS MSRPLLGLIL LNEKYFSDLR NSIVNSQPPE KQQAMHLCFE 1051 1100 ENSTTRP00000000114/1-1081 NLMEGIERNL LTKNRDRFTQ NLSAFRREVN DSMKNSTYGV NSNDMMS BACU001996/1-1038 NLMEGIERNL LTKNRDR--- ---------- ---------- ------- bmy_00962T0/1-1039 NLMEGIERNL LTKNRDRFTQ NLSAFRREVN DSMKNSTYGV NSNDMMS ENSP00000252512/1-1087 NLMEGIERNL LTKNRDRFTQ NLSAFRREVN DSMKNSTYGV NSNDMMS ENSBTAP00000055736/1-1087 NLMEGIERNL LTKNRDRFTQ NLSAFRREVN DSMKNSTYGV NSNDMMS