KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:27:20 2014 Check: 00 .. Name: ENSBTAP00000055778/1-347 Len: 439 Check: 1478 Weight: 1.00 Name: bmy_09918T0/1-326 Len: 439 Check: 2544 Weight: 1.00 Name: BACU005675/1-343 Len: 439 Check: 829 Weight: 1.00 Name: ENSTTRP00000010834/1-341 Len: 439 Check: 6767 Weight: 1.00 // 1 50 ENSBTAP00000055778/1-347 MFSLLSPTSW LPSLPSLDWG SGLLDALLQG LVGACAVSIL NNLLKVYFFV bmy_09918T0/1-326 -------EEW LE--PSQSWP LS-------- ---------- ---------- BACU005675/1-343 MLSLLSLPSW LPSLPSLEWG SSLLDALLQG LVGACGVSVL NNLLKVYFFV ENSTTRP00000010834/1-341 NFYLLSLPSW LPSLPSLEWG SGLLDALLQG LVGACGVSVL NNLLKVYFFV 51 100 ENSBTAP00000055778/1-347 GCANHPELRL EKQRLQARWA SLETVHLAGL ALILTVVGVR VAALVVLEFS bmy_09918T0/1-326 --ATSPAQ-- ---------- ---------- ---------- ---------- BACU005675/1-343 GCTNDPERRL EKERLRAQWA SLETVHLAGL ALILTVVGVR VAALVVLEFS ENSTTRP00000010834/1-341 GCTNDPERRL EKERLRAQWA SLETVHLAGL ALILTVVQVR VAALVVLEFS 101 150 ENSBTAP00000055778/1-347 LRAVSMLLSL D---KGTKKL QLYLLCQYSL GCGLICGLSF LQEGAPHGTL bmy_09918T0/1-326 ---------- --GARGTERL QLYLLCQYSL GCGLTCSLSF LQEGAQHRTL BACU005675/1-343 LRAVSMLLSL DKGARGTERL QLYLLCQYSL GCGLTCSLSF LQEGAPQRML ENSTTRP00000010834/1-341 LRAVSMLLSL DKGARGTERL QLYLLCQYSL GCGLTCSLSF LQEGAPHRTL 151 200 ENSBTAP00000055778/1-347 NLMLGLGLAA LLSTGARRLR HHVCQRYELH GSQRYCGICL SLLAGAHHLP bmy_09918T0/1-326 NLLLGLGLAA LLSSGTRRLR RHVCQLYELH SSQRYCGVCL GLLAGARSLP BACU005675/1-343 NLLLGLGLAT LLSSGTRRLR RHVCQLYELH SSQRYCGVCL GLLAGARGLP ENSTTRP00000010834/1-341 NLLLGLGLAA LLRSGSRRLR RHVCQLYELH SSQRYCGVCL GLLAGACSLP 201 250 ENSBTAP00000055778/1-347 RLLGRTLAVT FIVGNLAAVA LINRDFLTTS EAVRFWTPLT ICYTLLVIYM bmy_09918T0/1-326 RLLGRALAVT FAVGNLAAVA LLNRDFLTTS EA-------- ---------- BACU005675/1-343 RLLGRALAVT FAVGNLAAVA LLNRDFLTTS EAVRFWMPLT ICYTLLLIYM ENSTTRP00000010834/1-341 RLLGRALAVT FAVGNLAAVT LLNRDFLTTS EAVRFWMPLT ICYALLVIYM 251 300 ENSBTAP00000055778/1-347 QEEQRQRPGL KSHVQTVLVR MCGLFVLLLT VGRWLDLLGI FISLLGELWC bmy_09918T0/1-326 --EQQRHPGL QSQVQTVLVR MCGLLLLLLT VGRWLDLLGI LISLLGELWC BACU005675/1-343 QEEQQRHPGL QSQVQTVLVR MCGLLLLLLT VGRWLDLLGI LISLLGELWC ENSTTRP00000010834/1-341 QEERQQHPGL QSQVQTVLVR MCGLFLLLLT VGRWLDLVGI FTSLLGEFWC 301 350 ENSBTAP00000055778/1-347 LVGVRTLLDL CQIQVGTPAL KVPQTLKPCS RQPQEPHQ-- ---------- bmy_09918T0/1-326 LLGTRTLFDL CQIQVGTRSL NVPQTLKPCS RQPWEPRKVF RRAGVTSLGV BACU005675/1-343 LLGTRTLFDL CQIQ------ DFPPQ-RPSA SAPSQPQP-- ---------- ENSTTRP00000010834/1-341 LLYTRTLFDL CQIQ------ DFPSQRLPSA --PSQSRP-- ---------- 351 400 ENSBTAP00000055778/1-347 -----GRTSY RRIGARE--- ---------- ---------- ---------- bmy_09918T0/1-326 GAFRVSSKPA PALGTCPATG DGPLLTYLSR DLESLRAAQA HLEALTPGCC BACU005675/1-343 ------SAPA QPQGTAPS-- ---------- ---------- ---------- ENSTTRP00000010834/1-341 ------SAPA QPQGASS--- ---------- ---------- ---------- 401 450 ENSBTAP00000055778/1-347 ---------- ---------- ---------- --------- bmy_09918T0/1-326 LVAEWQGCPP PGALGTPREG GEDLGLGPSE GGDTWRLLG BACU005675/1-343 ---------- ---------- ---------- --------- ENSTTRP00000010834/1-341 ---------- ---------- ---------- ---------