KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 18:27:21 2014  Check: 00 ..

 Name: BACU004357/1-161          Len:    165  Check:  9349  Weight:  1.00
 Name: ENSP00000338348/1-165     Len:    165  Check:  9906  Weight:  1.00
 Name: bmy_18492T0/1-159         Len:    165  Check:  1970  Weight:  1.00
 Name: ENSBTAP00000055782/1-123  Len:    165  Check:  5121  Weight:  1.00
 Name: ENSTTRP00000001431/1-122  Len:    165  Check:  3006  Weight:  1.00

//


                          1                                                   50
BACU004357/1-161          ----FIMVLL FNLIELTLNP PEGIVAGPMN EENFFEWEAL IMGPEDTCFE 
ENSP00000338348/1-165     MAGTALKRLM AEYKQLTLNP PEGIVAGPMN EENFFEWEAL IMGPEDTCFE 
bmy_18492T0/1-159         ------MVLL FNLIELTLNP PEGIVAGPMN EENFFEWEAL IMGPEDTCFE 
ENSBTAP00000055782/1-123  ---------- ---------- ---------- ---------- --GPEDTCFE 
ENSTTRP00000001431/1-122  ------MVLL FNLIELTLNP PEGIVAGPMN EENFFEWEAL IMGPEDTCFE 


                          51                                                 100
BACU004357/1-161          FGVFPAILSF PLDYPLSPPK MRFTCEMFHP NIYPDGRVCI SILHAPGDDP 
ENSP00000338348/1-165     FGVFPAILSF PLDYPLSPPK MRFTCEMFHP NIYPDGRVCI SILHAPGDDP 
bmy_18492T0/1-159         FGVFPAILSF PLDYPLSPPK MRFTCEMFHP NIYPDGRVCI SILHAPGDDP 
ENSBTAP00000055782/1-123  FGVFPAILSF PLDYPLSPPK MRFTCEMFHP NIYPDGRVCI SILHAPGDDP 
ENSTTRP00000001431/1-122  FGVFPAILSF PLDYPLSPPK MRFTCEMFHP NIYPDGRVCI SILHAPGDDP 


                          101                                                150
BACU004357/1-161          MGYESSAERW SPVQSVEKIL LSVVSMLAEP NDESGANVDA SKMWRDDREQ 
ENSP00000338348/1-165     MGYESSAERW SPVQSVEKIL LSVVSMLAEP NDESGANVDA SKMWRDDREQ 
bmy_18492T0/1-159         MGYESSAERW SPVQSVEKIL LSVVSMLAEP NDESGANVDA SKMWRDDREQ 
ENSBTAP00000055782/1-123  MGYESSAERW SPVQSVEKIL LSVVSMLAEP NDESGANVDA SKMWRDDREQ 
ENSTTRP00000001431/1-122  MGYESSAERW SPVQSVEKIL LSVVSMLA-- ---------- ---------- 


                          151                                                200
BACU004357/1-161          FYKIATQIVQ KSLGL 
ENSP00000338348/1-165     FYKIAKQIVQ KSLGL 
bmy_18492T0/1-159         FYKIAKQLVQ KSLGL 
ENSBTAP00000055782/1-123  FYKVAKQIVQ KSLGL 
ENSTTRP00000001431/1-122  ---------- -----