KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:27:21 2014 Check: 00 .. Name: ENSBTAP00000055795/1-562 Len: 805 Check: 9227 Weight: 1.00 Name: ENSTTRP00000001857/1-548 Len: 805 Check: 7457 Weight: 1.00 Name: bmy_21507T0/1-549 Len: 805 Check: 5651 Weight: 1.00 Name: BACU004474/1-774 Len: 805 Check: 7021 Weight: 1.00 // 1 50 ENSBTAP00000055795/1-562 MHISKKKLIL LFGIIFLEQS KSATLSLPKV STCGQSPVKS QPLNYLNIFS ENSTTRP00000001857/1-548 MHMTKNKLIL LLGMICLEQS KSATLSLPKA PTCGQSLVQS RPLNYLNIFS bmy_21507T0/1-549 MHMSKNKLIL LLGMICLEQS KSATLSLPKV PTCGQSLVKS RPLNYLNIFS BACU004474/1-774 MHMSKNKLIL LLGMICLEQS KSATLSLPKV PTCGQSLVKS RPLNYLNIFS 51 100 ENSBTAP00000055795/1-562 RIVGGRQVAK GSYPW----- --------QV SLKQRQKHVC GGTIISPQWV ENSTTRP00000001857/1-548 RIVGGRQVEK GSYPW----- --------QV SLKRRQKHVC GGTIISPEWV bmy_21507T0/1-549 RIVGGRQVEK GSYPWQGINL LLFEVFAIQV SLKRRQKHVC GGTIISPEWV BACU004474/1-774 RIVGGRQVEK GSYPW----- --------QV SLKRRQKHVC GGTIISPEWV 101 150 ENSBTAP00000055795/1-562 ITAAHCVANR NTVSTFNVTA GEYDLRYVEP GEQTLTIETI IIHPHFSTKK ENSTTRP00000001857/1-548 ITAAHCVANR NIASTFNVTA GEYDLSYIEP GEQTLTIETI IIHPYFSTKK bmy_21507T0/1-549 ITAAHCVANR NIASAFNVTA GEYDLSYIEP GEQTLTIETI IIHPYFSTKK BACU004474/1-774 ITAAHCVANR NIASTFNVTA GEYDLSYIEP GEQTLTIETI IIHPYFSTKK 151 200 ENSBTAP00000055795/1-562 PMDYDIALLK MAGAFRFDQF VGPMCLPEPG ERFKPGFICT TAGWGRLSEN ENSTTRP00000001857/1-548 PMDYDIALLK MAGAFHFDQS VGPVCLPEPG EQFEPGFICT TTGWGRLNEN bmy_21507T0/1-549 PMDYDIALLK MAGAFHFDQS VGPVCLPEPG EQFEPGFICT TTGWGRLNED BACU004474/1-774 PMDYDIALLK MAGAFHFDQS VRPVCLPEPG EQFEPGFICT TTGWGRLNED 201 250 ENSBTAP00000055795/1-562 GISPQVLQEV NLPILTQDEC ITALLTLEKP ISGRTFLCTG FPDGGRDACQ ENSTTRP00000001857/1-548 GVVPQVLQEV NLPILTQDEC ITALLTLQKP ISGRTFLCAG FPDGGRDACQ bmy_21507T0/1-549 GVVPQVLQEV NLPILTQDEC ITALLTLQKP ISGQTFLCTG FPDGGRDACQ BACU004474/1-774 GVVPQVLQEV NLPILTQDEC ITALLTLQKP ISGRTFLCTG FPDGGRDACQ 251 300 ENSBTAP00000055795/1-562 GDSGGSLMCR NKKGTWTMAG VTSWGLGCGR GWKNNLQKDD QGSPGIFTDL ENSTTRP00000001857/1-548 GDSGGSLMCR NKKGTWTLAG VTSWGLGCGR GWRNNLQKDD QGSPGIFTDL bmy_21507T0/1-549 GDSGGSLMCR NKKGTWTLAG VTSWGLGCGR GWRNNLQKDD QGSPGIFTDL BACU004474/1-774 GDSGGSLMCR NKKGTWTLAG VTSWGLGCGR GWRNNLQKDD QGSPGIFTDL 301 350 ENSBTAP00000055795/1-562 TKVLSWIHKH IRIGNQAKTS RATCSEQDRV VRALEGDLHF PESPFLYYES ENSTTRP00000001857/1-548 TKVLPWIHKH IQIGKLRKHS RASCSEQDPV IRASEGELHF PESPFLYYES bmy_21507T0/1-549 TKVLPWIHKH IQI------- -ASCSEQDRV IRASEGELHF PESPFLYYDG BACU004474/1-774 TKVLPWIH-- ---------- -TSCSEQDRV IRASAGELHF PESPFLYYES 351 400 ENSBTAP00000055795/1-562 KQQCAWTLLV PEEMHVLLSF SHFDAESCDH NYLSIYSLED TLIAKFCGER ENSTTRP00000001857/1-548 KQLCVWTLFV PEGMHVLLNF SHFDAESCHH NYLSMYSLED TLIGKFCGNS bmy_21507T0/1-549 KQMCVWTLFV PEGMHVLLNF SHFDAESCHH NYLSIYSLED TLIGKFCGDS BACU004474/1-774 KQMCVWTLFV PEGMHVLLNF SHFDAESCHH NYLSVYSLED TLIGKFCGDS 401 450 ENSBTAP00000055795/1-562 LASSVLVGSN AIRLSFISDN TDNAVGFNLT YKAVKPNYLP DGNCNIFSLI ENSTTRP00000001857/1-548 LASSVLV--- ---------- ---AVGFNLT YKALKPNYLP ESGCSSLTIL bmy_21507T0/1-549 LASSVLVGSN AIRLRFISDA TDYAVGFNLT YKALKPNYLP DSGCSSLTIL BACU004474/1-774 LASSVLVGSN AIRLRFISDA TDYAVGFNLT YKALKPNYLP DSGCSSLTIL 451 500 ENSBTAP00000055795/1-562 IEKRGMANSL NFPHKYRDYR SPVWEISGLK KILIKLSFQD LKIEENGDCT ENSTTRP00000001857/1-548 FEE-GLIQSL HYPEDYSNMA SCNWVFQAP- HHLVKLSFQN LEAEESGDCT bmy_21507T0/1-549 FEE-GLIQSL HYPEDYGNMA SCNWVFQAPK HHLVK----N LEIEESGDCT BACU004474/1-774 FEE-GLIQSL HYPEDYSNMA SCNWVFQAPK RHLVK----N LEIEESGDCT 501 550 ENSBTAP00000055795/1-562 SDYVSVHRDV ERKKEIARLC GFAVPTPVVS ITRVMSISFQ SNENANFRGF ENSTTRP00000001857/1-548 SDYVSMHRDV ERKKEIXXLC GFVVPAPVVS ISRVMSISFQ SAENMTFRGF bmy_21507T0/1-549 SDYVSMHRDV ERKKEIARLC GFVVPAPVVS ISRVMSISFH SDENMTFRGF BACU004474/1-774 SDYVSVHRDV ERKKEIARLC GFVVPAPVVS ISRVMSISFQ SDENMTFRGF 551 600 ENSBTAP00000055795/1-562 QATVSFVHET GKRTE----- ---------- ---------- ---------- ENSTTRP00000001857/1-548 QATVSFVPKT GKKIE----- ---------- ---------- ---------- bmy_21507T0/1-549 QATVSFIPKT ---------- ---------- ---------- ---------- BACU004474/1-774 QAAVSFIPKT GFNISRLENE SVFLETWNVL PEESSASDAL ESTGAGFPSG 601 650 ENSBTAP00000055795/1-562 ---------- -VPTLS---- LILLM----- ---------- ---------- ENSTTRP00000001857/1-548 ---------- -APTPQVSSL ILLLW----- ---------- ---------- bmy_21507T0/1-549 ---------- ---------- ---VL----- ---------- ---------- BACU004474/1-774 GGKDSFWDTS LLLAITVTGI TVLLLALKNK NVKKRHPITL QHPEAKFLQP 651 700 ENSBTAP00000055795/1-562 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001857/1-548 ---------- ---------- ---------- ---------- ---------- bmy_21507T0/1-549 ---------- ---------- ---------- ---------- ---------- BACU004474/1-774 LIEKEQISYN TRRFRFGLPS PDHAFGLPVG NYVNLLARID GVLVIRAYTP 701 750 ENSBTAP00000055795/1-562 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001857/1-548 ---------- ---------- ---------- ---------- ---------- bmy_21507T0/1-549 ---------- ---------- ---------- ---------- ---------- BACU004474/1-774 VSSDEDLGFV DLIMKTEEEI LVSKELEEVA RTHPKQFNLW YTLDGPPVGW 751 800 ENSBTAP00000055795/1-562 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001857/1-548 ---------- ---------- ---------- ---------- ---------- bmy_21507T0/1-549 ---------- ---------- ---------- ---------- ---------- BACU004474/1-774 KYSSGFITED TIKEHLPRPG RFSFIPACGP PPLIQRAAHP NLEKLGYTKD 801 850 ENSBTAP00000055795/1-562 ----- ENSTTRP00000001857/1-548 ----- bmy_21507T0/1-549 ----- BACU004474/1-774 MIFTY