KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 18:27:23 2014  Check: 00 ..

 Name: ENSBTAP00000055799/1-239  Len:    239  Check:  8799  Weight:  1.00
 Name: bmy_21386T0/1-160         Len:    239  Check:  3185  Weight:  1.00
 Name: BACU019195/1-218          Len:    239  Check:  8080  Weight:  1.00
 Name: ENSTTRP00000006206/1-218  Len:    239  Check:  4354  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000055799/1-239  YNSSLMSVSL PGLCLGNEDE ENNEKLPKPL LHTLPSSEVA RGSNVTLMCQ 
bmy_21386T0/1-160         MKSQTNSKFF P--------- ---EKFSKSL LHALPSSEVE HSSNVTLKCQ 
BACU019195/1-218          -----MRVSL PGLCLGNEDE KNNEKISKSL LHALPSSEVE HSSNVTLKCQ 
ENSTTRP00000006206/1-218  MITEFLSLLY LGLCLGNEDE KTHEKFSKSL LHALPSSEVE HSSNVTLKCQ 


                          51                                                 100
ENSBTAP00000055799/1-239  FDVWNATFMR GKSQDSGYNK GQNSTGTWLN SSSLTWSDLK KNNNAILYFC 
bmy_21386T0/1-160         SDVPNVTFVL GKLQGSGYKR ECNSTG---Q DTKFLLTDLK PKDVG-QYFC 
BACU019195/1-218          SDVQNVTFVL GKLQDSGYKQ DCNSTG---Q DTKFLLTDLK PKDAG-QYFC 
ENSTTRP00000006206/1-218  SDVQNVTFVL GKLQDSGYKQ ECNSTG---Q DTKFLLTDLK PKDAG-QYFC 


                          101                                                150
ENSBTAP00000055799/1-239  CWCSFLGYDW KLFSEAAQCI PGASLTLGPV LLPPDTRIVF VAAFSCLSLF 
bmy_21386T0/1-160         TYKTVTVEKW ELSTPKSS-- -----LSPPS PASLS----- ---------- 
BACU019195/1-218          TYKTVAVEKW EINEDDES-- -------GPD PAKIDTKVIV VTTISCLSVF 
ENSTTRP00000006206/1-218  TYKTV----- ---KDDES-- -------GPD PEKTDTNVTF VATFCCLCVL 


                          151                                                200
ENSBTAP00000055799/1-239  LLFLAIFFIY RCTQQDSSEE ESIKRSCHSK VHKQRDADAD VSRLERISES 
bmy_21386T0/1-160         ---------F SSSLPSSSST DAFSTIHHMK NP-------- ---------- 
BACU019195/1-218          LLFVAVFFIY RCTQHDSSHE ESAKRTSHSK FPKQGAAAPH ARLF---SSK 
ENSTTRP00000006206/1-218  LLFIVVFFIY RCTRHDSSHE ESAKRTSHSK LPEQGAADAG VSKLEGTSES 


                          201                                                250
ENSBTAP00000055799/1-239  PDEPEGVTYA QLNTAALSGA ASVPAEETPN SCDYTMVKV 
bmy_21386T0/1-160         PREP------ --------AI PNFPSRELQV YPNWKEYLN 
BACU019195/1-218          PEESQGVTHE QLNTNALSAA ASVPTQEPPG SCVYATLKL 
ENSTTRP00000006206/1-218  PEESQGVIYV KLNANALSEA ASVPTMEPPG SCDYATLKV