KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:27:27 2014 Check: 00 .. Name: ENSP00000299736/1-272 Len: 273 Check: 6861 Weight: 1.00 Name: ENSBTAP00000055844/1-263 Len: 273 Check: 4597 Weight: 1.00 Name: bmy_10713T0/1-259 Len: 273 Check: 3672 Weight: 1.00 Name: BACU005238/1-152 Len: 273 Check: 4141 Weight: 1.00 // 1 50 ENSP00000299736/1-272 MRRSRSSAAA KLRGQKRSGA SAAPAASAAA ALAPSATRTR RSASQAGSKS ENSBTAP00000055844/1-263 MRRARSGGAT KPRGQKRPGT SRAPAS---- --APSADRAR RPAVQAGGGS bmy_10713T0/1-259 MRRARSGAAA KPRGQKRSGV SRAPAAGAS- --APGADRAR RPAGQAGGGS BACU005238/1-152 MWKQ------ ---GALRRG- ---------- ---------- ---------- 51 100 ENSP00000299736/1-272 QAVEKPPSEK PRLRRSSPRA QEEGPGEPPP PELALLPPPP PPPPT-PATP ENSBTAP00000055844/1-263 RAAARAQCAE PG-GWKTERA AGFGTSASAP RPGALLPPAL RPRAKDPRLP bmy_10713T0/1-259 RAAARQPSAK RR-PQSSPRA QEAGPGEPPP E-----PPLP PPPPAAP--- BACU005238/1-152 RAAAGTP--- ---------- ---------- ---------- ---------- 101 150 ENSP00000299736/1-272 TSSASNLDLG EQRERWETFQ KRQKLTSEGA AKLLLDTFEY QGLVKHTGGC ENSBTAP00000055844/1-263 SCPRRTLDIL KQTDKW---Q KKKKKRFQSV EGLKLNIIEY QGLVKHTGGC bmy_10713T0/1-259 --SASELDLG EQRERWETFQ KRQRLSFEGA AKLLLDTYEY QGLVKHTGGC BACU005238/1-152 ---------- ---------- ---------- --------EY QGLVKHTGGC 151 200 ENSP00000299736/1-272 HCGAVRFEVW ASADLHIFDC NCSICKKKQN RHFIVPASRF KLLKGAEHIT ENSBTAP00000055844/1-263 HCGAVRFEVW ASADLHIFDC NCSICKKKQN KHFIVPASRF KLLKGADSIT bmy_10713T0/1-259 HCGAVRFEVW ASADLHIFDC NCSICKKKQN RHFIVPASRF KLLKGAESIT BACU005238/1-152 HCGAVRFEVW ASADLHIFDC NCSICKKKQN RHFIVPASRF KLLKGAESIT 201 250 ENSP00000299736/1-272 TYTFNTHKAQ HTFCKRCGVQ SFYTPRSNPG GFGIAPHCLD EGTVRSMVTE ENSBTAP00000055844/1-263 TYTFNTHKAQ HTFCKRCGVQ SFYSPRSNPG GFGIAPHCLD EGTVRSVVVE bmy_10713T0/1-259 TYTFNTHKAQ HTFCKRCGVQ SFYSPRSNPG GFGIAPHCLD EGTVRSVVVE BACU005238/1-152 TYTFNTHKAQ HTFCKRCGVQ SFYSPRSNPG GFGIAPHCLD EGTVRSVVVE 251 300 ENSP00000299736/1-272 EFNGSDWEKA MKEHKTIKNM SKE ENSBTAP00000055844/1-263 EFNGSDWEKA MKEHKTIKNM SKE bmy_10713T0/1-259 EFNGSDWEKA IKEHKTIKSM SKE BACU005238/1-152 EFNGSDWEKA IKEHKTIKSM SKE