KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:27 2014 Check: 00 .. Name: bmy_19486T0/1-209 Len: 324 Check: 8612 Weight: 1.00 Name: ENSP00000402929/1-318 Len: 324 Check: 4710 Weight: 1.00 Name: ENSBTAP00000055854/1-271 Len: 324 Check: 7858 Weight: 1.00 Name: BACU013753/1-184 Len: 324 Check: 6472 Weight: 1.00 Name: ENSTTRP00000000286/1-319 Len: 324 Check: 5319 Weight: 1.00 // 1 50 bmy_19486T0/1-209 ---------- ---------- ---------- MEKVEMHTAQ PALPADTKAA ENSP00000402929/1-318 MDCQENEYWD QWGRCVTCQR CGPGQELSKD CGYGEGGDAY CTACPPRRYK ENSBTAP00000055854/1-271 ---------- ---------- --------QD CGYGEGGDAY CTACPPRRYK BACU013753/1-184 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000286/1-319 MDCQENEYWD QWGRCVACQL CGPGQELSKD CGYGEGGDAY CAACPPRRYK 51 100 bmy_19486T0/1-209 GATIDVRLAS PVLSSIVSRR RTVQLPLMPS VGTVCPGSTK RHVLEACRI- ENSP00000402929/1-318 SSWGHHRCQS CITCAVINR- --VQKVNCTA TSNAVCGDCL PRFYRKTRIG ENSBTAP00000055854/1-271 SSWGHHRCQT CITCAVINR- --IQQANCTA TSNAICGNCL PRFYQKTRIG BACU013753/1-184 -MW------- ---------- ---------- ---------- ---------- ENSTTRP00000000286/1-319 SSWGHHRCHT CITCAVINR- --IQKENCTA TSNAICGDCL PRFYQKTRIG 101 150 bmy_19486T0/1-209 -----KSVSR ARSRPPPLRF SAFQLSLVKA DVSTVSPQEV TLVALVSSLL ENSP00000402929/1-318 GLQDQECIPC TKQTPTSEVQ CAFQLSLVEA DTPTVPPQEA TLVALVSSLL ENSBTAP00000055854/1-271 GLQDQECIPC TKQTPTSEVQ CAFQLSLVKA DVPTVSPQEA TLVALVSSLL BACU013753/1-184 ---------- --------IT GAFQLSLVKA DVPTVSPQEV TLVALVSSLL ENSTTRP00000000286/1-319 GLQDQECIPC TKQTPTSEVQ CAFQLSLVKA DVPTVSPQEV TLVALVSSLL 151 200 bmy_19486T0/1-209 MVFTLAFLGL FFLYCKQFFN RNCQRGLL-- ---------- -------GSW ENSP00000402929/1-318 VVFTLAFLGL FFLYCKQFFN RHCQREKLII FSDPVPASLN LIPEFAGGLL ENSBTAP00000055854/1-271 VVFTLAFLGL FFLYCKQFFN RHCQR----- ---------- ----VAGGSL BACU013753/1-184 MVFTLAFLGL FFLYCKQFFN RNCQR----- ---------- ------GGSL ENSTTRP00000000286/1-319 MVFTLAFLGL FFLYCKQFFN RNCQREKLTI FPDPPPGNLN LIPQFSGGSL 201 250 bmy_19486T0/1-209 Q--------- ---------- ---------- ---------- ---------- ENSP00000402929/1-318 QFEADKTAKE ESLFPVPPSK ETSAESQVSE NIFQTQPLNP ILEDDCSSTS ENSBTAP00000055854/1-271 QYEAGETAEE GSLFPIPPGQ KTSPESPLSE SIFETQPLNS ILDDNGSSTH BACU013753/1-184 QYEADEAAEE ESLFPMPPGQ ETSPESPLSE SVFETQAFNP ILDDDCSSTR ENSTTRP00000000286/1-319 QYEADEAAEE ESLFPMPPGQ ETSPESPLSE SIFETQELNP ILDDDCSSTR 251 300 bmy_19486T0/1-209 --PSRSPWTL LPCSYTTTAA GAWDVVSTTA CTLQMGHILS HPT------- ENSP00000402929/1-318 GFPTQESFTM ASCTSESHSH --WVHSPIEC TELDLQKFSS SASYTGAETL ENSBTAP00000055854/1-271 GFPIQESFTL ASCASESHSH --WVHTPIEC TELDLRKFSS SASYTGAETL BACU013753/1-184 GFPTQESFTL ASCASESHFH --WVHTPIEC TELDLRKFSS SASYTGAETL ENSTTRP00000000286/1-319 GFPTQESFTL ASCASESHSH --WVHTPIEC TELDLRKISS SASYTGAETL 301 350 bmy_19486T0/1-209 KGLILHHFPK TDQQHFFLSY PR-- ENSP00000402929/1-318 GGNTVESTGD RLELNVPFEV PSP- ENSBTAP00000055854/1-271 AGNAAESSGD RPELTVLFEV LSP- BACU013753/1-184 RGNTAESSGD RLELTVPFEV PSL- ENSTTRP00000000286/1-319 RGNTAEHSGD RLELTVPFEV PSLS