KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:27:28 2014 Check: 00 .. Name: ENSBTAP00000055858/1-284 Len: 285 Check: 1870 Weight: 1.00 Name: ENSP00000343552/1-284 Len: 285 Check: 3809 Weight: 1.00 Name: bmy_09534T0/1-234 Len: 285 Check: 6964 Weight: 1.00 Name: ENSTTRP00000009958/1-284 Len: 285 Check: 3439 Weight: 1.00 // 1 50 ENSBTAP00000055858/1-284 RKATGAHCLP GAESLGNLKP QPGLGASMLP FCRIKGAGLQ GRTGLALYV- ENSP00000343552/1-284 MAGCAARAPP GSEARLSLAT FL-LGASVLA LPLLTRAGLQ GRTGLALYVA bmy_09534T0/1-234 ---------- ---------- ------SVLA LPLLTRAGLQ GRTGLALYVA ENSTTRP00000009958/1-284 MAGCAARAPP GSEARLSLAT FL-LGASVLA LPLLTRAGLQ GRTGLALYVA 51 100 ENSBTAP00000055858/1-284 GLNALLLLLY RPPRYQIAIR ACFLGFVFGC GVLLSFSQSS WNHFGWYMCS ENSP00000343552/1-284 GLNALLLLLY RPPRYQIAIR ACFLGFVFGC GTLLSFSQSS WSHFGWYMCS bmy_09534T0/1-234 GLNALLLLLY RPPRYQIAIR ACFLGFVFGC GVLLSFSQSS WNHFGWYMCS ENSTTRP00000009958/1-284 GLNALLLLLY RPPRYQIAVR ACFLGFVFGC GVLLSFSQSS WNHFGWYMCS 101 150 ENSBTAP00000055858/1-284 LSLFHYSEYL VTAVNNPKSL SLDSFLLNHS LEYTVAALSS WIEFTLENIF ENSP00000343552/1-284 LSLFHYSEYL VTAVNNPKSL SLDSFLLNHS LEYTVAALSS WLEFTLENIF bmy_09534T0/1-234 LSLFHYSEYL VTAVNNPKSL SLDSFLLNHS VEYTVAALSS WIEFILENIF ENSTTRP00000009958/1-284 LSLFHYSEYL VTAVNNPKSL SLDSFLLNHS VEYTVAALSS WIEFTLENIF 151 200 ENSBTAP00000055858/1-284 WPELKQITWI SAMGLLMVVF GECLRKAAMF TAGSNFNHVV QNEKSETHTL ENSP00000343552/1-284 WPELKQITWL SVTGLLMVVF GECLRKAAMF TAGSNFNHVV QNEKSDTHTL bmy_09534T0/1-234 WPELKQITWL SATGLLMVVF GECLRKAAMF TAGSNFNHVV QNEKSETHTL ENSTTRP00000009958/1-284 WPELKQITWL SATGLLMVVF GECLRKAAMF TAGSNFNHVV QNEKSDTHTL 201 250 ENSBTAP00000055858/1-284 VTSGVYAWFR HPSYVGWFYW SIGTQVMLCN PICGVSYALT VWRFFRDRTE ENSP00000343552/1-284 VTSGVYAWFR HPSYVGWFYW SIGTQVMLCN PICGVSYALT VWRFFRDRTE bmy_09534T0/1-234 ---------- ---------- -----VVLCN PICGVSYALT VWRFFRDRTE ENSTTRP00000009958/1-284 VTSGVYAWFR HPSYVGWFYW SIGTQVVLCN PICGVSYALT VWRFFRDRTE 251 300 ENSBTAP00000055858/1-284 EEEISLIHFF GEEYLEYKKR VPTGLPFIKG VKVEL ENSP00000343552/1-284 EEEISLIHFF GEEYLEYKKR VPTGLPFIKG VKVDL bmy_09534T0/1-234 EEEISLIHFF GDEYLEYKKR VPTGLPFIKG VKVEL ENSTTRP00000009958/1-284 EEEISLIHFF GDEYLEYKKR VPTGLPFIKG VKVEL