KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 18:27:28 2014  Check: 00 ..

 Name: ENSBTAP00000055858/1-284  Len:    285  Check:  1870  Weight:  1.00
 Name: ENSP00000343552/1-284     Len:    285  Check:  3809  Weight:  1.00
 Name: bmy_09534T0/1-234         Len:    285  Check:  6964  Weight:  1.00
 Name: ENSTTRP00000009958/1-284  Len:    285  Check:  3439  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000055858/1-284  RKATGAHCLP GAESLGNLKP QPGLGASMLP FCRIKGAGLQ GRTGLALYV- 
ENSP00000343552/1-284     MAGCAARAPP GSEARLSLAT FL-LGASVLA LPLLTRAGLQ GRTGLALYVA 
bmy_09534T0/1-234         ---------- ---------- ------SVLA LPLLTRAGLQ GRTGLALYVA 
ENSTTRP00000009958/1-284  MAGCAARAPP GSEARLSLAT FL-LGASVLA LPLLTRAGLQ GRTGLALYVA 


                          51                                                 100
ENSBTAP00000055858/1-284  GLNALLLLLY RPPRYQIAIR ACFLGFVFGC GVLLSFSQSS WNHFGWYMCS 
ENSP00000343552/1-284     GLNALLLLLY RPPRYQIAIR ACFLGFVFGC GTLLSFSQSS WSHFGWYMCS 
bmy_09534T0/1-234         GLNALLLLLY RPPRYQIAIR ACFLGFVFGC GVLLSFSQSS WNHFGWYMCS 
ENSTTRP00000009958/1-284  GLNALLLLLY RPPRYQIAVR ACFLGFVFGC GVLLSFSQSS WNHFGWYMCS 


                          101                                                150
ENSBTAP00000055858/1-284  LSLFHYSEYL VTAVNNPKSL SLDSFLLNHS LEYTVAALSS WIEFTLENIF 
ENSP00000343552/1-284     LSLFHYSEYL VTAVNNPKSL SLDSFLLNHS LEYTVAALSS WLEFTLENIF 
bmy_09534T0/1-234         LSLFHYSEYL VTAVNNPKSL SLDSFLLNHS VEYTVAALSS WIEFILENIF 
ENSTTRP00000009958/1-284  LSLFHYSEYL VTAVNNPKSL SLDSFLLNHS VEYTVAALSS WIEFTLENIF 


                          151                                                200
ENSBTAP00000055858/1-284  WPELKQITWI SAMGLLMVVF GECLRKAAMF TAGSNFNHVV QNEKSETHTL 
ENSP00000343552/1-284     WPELKQITWL SVTGLLMVVF GECLRKAAMF TAGSNFNHVV QNEKSDTHTL 
bmy_09534T0/1-234         WPELKQITWL SATGLLMVVF GECLRKAAMF TAGSNFNHVV QNEKSETHTL 
ENSTTRP00000009958/1-284  WPELKQITWL SATGLLMVVF GECLRKAAMF TAGSNFNHVV QNEKSDTHTL 


                          201                                                250
ENSBTAP00000055858/1-284  VTSGVYAWFR HPSYVGWFYW SIGTQVMLCN PICGVSYALT VWRFFRDRTE 
ENSP00000343552/1-284     VTSGVYAWFR HPSYVGWFYW SIGTQVMLCN PICGVSYALT VWRFFRDRTE 
bmy_09534T0/1-234         ---------- ---------- -----VVLCN PICGVSYALT VWRFFRDRTE 
ENSTTRP00000009958/1-284  VTSGVYAWFR HPSYVGWFYW SIGTQVVLCN PICGVSYALT VWRFFRDRTE 


                          251                                                300
ENSBTAP00000055858/1-284  EEEISLIHFF GEEYLEYKKR VPTGLPFIKG VKVEL 
ENSP00000343552/1-284     EEEISLIHFF GEEYLEYKKR VPTGLPFIKG VKVDL 
bmy_09534T0/1-234         EEEISLIHFF GDEYLEYKKR VPTGLPFIKG VKVEL 
ENSTTRP00000009958/1-284  EEEISLIHFF GDEYLEYKKR VPTGLPFIKG VKVEL