KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:28 2014 Check: 00 .. Name: ENSBTAP00000055862/1-264 Len: 287 Check: 2507 Weight: 1.00 Name: ENSP00000296333/1-276 Len: 287 Check: 7935 Weight: 1.00 Name: ENSTTRP00000013172/1-276 Len: 287 Check: 9993 Weight: 1.00 Name: bmy_02305T0/1-220 Len: 287 Check: 6288 Weight: 1.00 Name: BACU003803/1-204 Len: 287 Check: 7476 Weight: 1.00 // 1 50 ENSBTAP00000055862/1-264 -----VAVRA VAWLLLWEAA GFTCSPATTF NNTHFVSGKK SLFILTGIRA ENSP00000296333/1-276 LAARVAAVRA AAWLLLGAAT GLTRGPAAAF TAARSDA--- ------GIRA ENSTTRP00000013172/1-276 LATPAVAVRA VAWLLLWEVA GLTCSPAIAF NTTPTDA--- ------GIRA bmy_02305T0/1-220 ---------- ---------- ---------- ---------- -------IRA BACU003803/1-204 ---------- ---------- ---------- ---------- -------MRG 51 100 ENSBTAP00000055862/1-264 TCSEIILRQE VLKDGFHRRS LSFKIYVFSD VTIHLHTFKQ LFKYYNXTGL ENSP00000296333/1-276 MCSEIILRQE VLKDGFH-RD LLIKV-KFGE SIEDLHTCRL LIKQDIPAGL ENSTTRP00000013172/1-276 TCSEIILRQE VLKDGFH-RD LLIKV-KFGE SIEDLQTCRL LIKQYIPTGL bmy_02305T0/1-220 TCSEIILRQE VLKDGFH-RD LLIKV-KFGE SIEDLQTCRL LIKQYIPTGL BACU003803/1-204 AG-------- ---------D LLIKV-KFGE SIEDLQTCRL LIKQYIPIGL 101 150 ENSBTAP00000055862/1-264 FVDPYELASL RERNITEAVM VLENFNIEAP NYLSKESEVL IYARQDSQCI ENSP00000296333/1-276 YVDPYELASL RERNITEAVM VSENFDIEAP NYLSKESEVL IYARRDSQCI ENSTTRP00000013172/1-276 FVDPYELASL RERNITEAVM VSENFNIEAP NYLSKESDVL IYARQDSQCI bmy_02305T0/1-220 FVDPYELSSL RERNITEAVM VSENFNIEAP NYLSKESEVL IYARQDSQCI BACU003803/1-204 FVDPYELSSL RERNITEAVM VSENFNIEAP NYLSKESEVL IYARQDSQCI 151 200 ENSBTAP00000055862/1-264 DCFQAFLPVH YRYHRPHVKD GETFIVVHNP DLLMYCDQ-- ---------- ENSP00000296333/1-276 DCFQAFLPVH CRYHRPHSED GEASIVVNNP DLLMFCDQAG SRRMIRFRFD ENSTTRP00000013172/1-276 DCFQAFLPVH YRYHRPHSKD GETFIVLNNP XXXXXXXXXX XXXXXXXXXX bmy_02305T0/1-220 DCFQAFLPVH YRYHRPHSKD GETFIVLNNP DLLMYCDQ-- ---------- BACU003803/1-204 DCFQAFLPVH YRYHRPHSKD GETFIVLNNP DLLMYCDQ-- ---------- 201 250 ENSBTAP00000055862/1-264 ------EFPV LKCWAQSEVT APCTLNSKDI CQWNNMKYKS VYKNLTLQVP ENSP00000296333/1-276 SFDKTIEFPI LKCWAHSEVA APCALENEDI CQWNKMKYKS VYKNVILQVP ENSTTRP00000013172/1-276 XXXXXXXFPI LKCWAQSEVT APCALNSKDN CQWNNMKYKS VYKTANLQVP bmy_02305T0/1-220 ------EFPI LKCWAQSEVT APCALNSKDN CQWNNMKYKS VYKNANLQVP BACU003803/1-204 ------EFPI LKCWAQSEVT APCALNSKDN CQWNNMKYKS VYKNANLQVP 251 300 ENSBTAP00000055862/1-264 VGLTIHTSLV CSVTLLISIL CSTLILVAVF KYGHFSL ENSP00000296333/1-276 VGLTVHTSLV CSVTLLITIL CSTLILVAVF KYGHFSL ENSTTRP00000013172/1-276 VGLTIHTSLV CSVTLFITIL CSTLILVAVF KYGRFSL bmy_02305T0/1-220 VGLTIHTSLV CSVTLFITIL CSTLILVAVF KYGHFSL BACU003803/1-204 VGLTVHTSLV CSVTLFITIL CSTLILVAVF KYGHFSL