KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 18:27:31 2014 Check: 00 ..
Name: ENSTTRP00000003695/1-163 Len: 176 Check: 8462 Weight: 1.00
Name: BACU016206/1-121 Len: 176 Check: 4293 Weight: 1.00
Name: bmy_05351T0/1-151 Len: 176 Check: 6161 Weight: 1.00
Name: ENSP00000361383/1-176 Len: 176 Check: 7122 Weight: 1.00
Name: ENSBTAP00000055894/1-119 Len: 176 Check: 2704 Weight: 1.00
//
1 50
ENSTTRP00000003695/1-163 ---------- -GKAFGLLKA RQERRLAEIN RLSAGREPKR PLQWSSQLSQ
BACU016206/1-121 ---------- ---------- ---------- ---------- ----------
bmy_05351T0/1-151 ---------- -----MVLSA SPKILLRLIH KGKPG----- -----GPGAS
ENSP00000361383/1-176 MSGELSNRFQ GGKAFGLLKA RQERRLAEIN RYCAGREPQL QRISCSQHSC
ENSBTAP00000055894/1-119 ---------- ---------- ---------- ---------- ----------
51 100
ENSTTRP00000003695/1-163 L--AVLPEFL CDQKYSDEEN LPEKLAAFKE KYMEFDLNNE GEIDLMSLKR
BACU016206/1-121 -----MWEFL CDQKYSDEEN LPEKLAAFKE KYMEFDLNNE GEIDLMSLKR
bmy_05351T0/1-151 IQEQVLEEFL CDQKYSDEEN LPEKLAAFKE KYMEFDLNNE GEIDLMSLKR
ENSP00000361383/1-176 LLALLFQEFL CDQKYSDEEN LPEKLTAFKE KYMEFDLNNE GEIDLMSLKR
ENSBTAP00000055894/1-119 -------EFL CDQKYSDEEN LPEKLTAFKE KYMEFDLNNE GEIDLMSLKR
101 150
ENSTTRP00000003695/1-163 MMEKLGVPKT HLEMKKMISE VTGGFSDTIS YRDFVNVMLG KRSAVLKLVM
BACU016206/1-121 MMEKLGVPKT HLEMKKMISE VTGGVSDTIS YRDFVNMMLG KRSAVLKLVM
bmy_05351T0/1-151 MMEKLGVPKT HLEMKKMISE VTGGVSDTIS YRDFVNMMLG KRSAVLKLVM
ENSP00000361383/1-176 MMEKLGVPKT HLEMKKMISE VTGGVSDTIS YRDFVNMMLG KRSAVLKLVM
ENSBTAP00000055894/1-119 MMEKLGVPKT HLEMKKMISE VTGGVSDTIS YRDFVNMMLG KRSAVLKLVM
151 200
ENSTTRP00000003695/1-163 MFEGKANESS PKPVGPPPER DIASLP
BACU016206/1-121 MFEGKANESS PKPVGPPPER DIASLP
bmy_05351T0/1-151 MFEGKANESS PKPVGPPPER DIASLP
ENSP00000361383/1-176 MFEGKANESS PKPVGPPPER DIASLP
ENSBTAP00000055894/1-119 MFEGKANEGS SKPVGPPPER DIASLP