KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:32 2014 Check: 00 .. Name: ENSP00000310255/1-470 Len: 524 Check: 2354 Weight: 1.00 Name: ENSBTAP00000055903/1-453 Len: 524 Check: 7376 Weight: 1.00 Name: ENSTTRP00000012578/1-461 Len: 524 Check: 8327 Weight: 1.00 Name: bmy_07836T0/1-507 Len: 524 Check: 7289 Weight: 1.00 Name: BACU003538/1-457 Len: 524 Check: 4780 Weight: 1.00 // 1 50 ENSP00000310255/1-470 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055903/1-453 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012578/1-461 ---------- ---------- ---------- ---------- ---------- bmy_07836T0/1-507 MHQAPAWGRA NGRTSGEAGT PCSFQPAACT LQSFVPSLIH QAPTPRPVGH BACU003538/1-457 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000310255/1-470 ----MDTTME ADLGATGHRP RTELDDEDSY PQGGWDTVFL VALLLLGLPA ENSBTAP00000055903/1-453 ----IDTAME ASLGAPGRWP RTELDDED-Y PQGGWDTVFL VALLLLGLPA ENSTTRP00000012578/1-461 ----MDTAME INLGAAGHGP RTELDDED-Y PQGGWDTVFL VALLLLGLPA bmy_07836T0/1-507 WGPQMDTAME VHLGAAGHGP RTELDDED-Y PQGGWDTVFL VALLLLGLPA BACU003538/1-457 ----MDTAME VHLGAAGHGP RTELDDED-Y PQGGWDTVFL VALLLLGLPA 101 150 ENSP00000310255/1-470 NGLMAWLAGS QARHGAGTRL ALLLLSLALS DFLFLAAAAF QILEIRHGGH ENSBTAP00000055903/1-453 NGLMAWLAGS QARQGAGTRL ALLLLSLALS DFLFLAAAAF QIMEIQHGGH ENSTTRP00000012578/1-461 NGLMAWLAGS QARQGAGTRL ALLLLSLALS DFLFLAAAAF QILEIQHGGH bmy_07836T0/1-507 NGLMAWLAGS QARQGAGTRL ALLLLSLALS DFLFLAAAAF QILEIQHGGH BACU003538/1-457 NGLMAWLAGS QARQGAGTRL ALLLLSLALS DFLFLVAAAF QILEIQHGGH 151 200 ENSP00000310255/1-470 WPLGTAACRF YYFLWGVSYS SGLFLLAALS LDRCLLALCP HWYPGHRPVR ENSBTAP00000055903/1-453 WPLGTAACRF YYFLWGVSYS SGLFLLATLS LDRCLLALCP RWYPERRPAR ENSTTRP00000012578/1-461 WPLGTAACRF YYFLWGVSYS SGLFLLTALS LDRCLLVLCP RWYPGHRPAR bmy_07836T0/1-507 WPLGTAACRF YYFLWGVSYS SGLFLLTALS LDRCLLALCP RWYPGHRPAR BACU003538/1-457 WPLGTAACRF YYFLWGVSYS SGL----SLS LDRCLLALCP RWYPGHRPAR 201 250 ENSP00000310255/1-470 LPLWVCAGVW VLATLFSVPW LVFPEAAVWW YDLVICLDFW DSEELSLRML ENSBTAP00000055903/1-453 LPLWVCAGVW VLATLFSVPW LVFPEAAVWW YDLVICLDFW DSEELPLRML ENSTTRP00000012578/1-461 LPLWVCAGVW VLATLFSVPW LVFPEAAVWW YDLVICLDFW DSEELPLRML bmy_07836T0/1-507 LPLWVCAGVW VLATLFSAPW LVFPEAAVWW YDLVICLDFW DSEELPLRML BACU003538/1-457 LPLWVCAGVW VLATLFSAPW LVFPEAAVWW YDLVICLDFW DSEELPLRML 251 300 ENSP00000310255/1-470 EVLGGFLPFL LLLVCHVLTQ ATACRTCHRQ QQPAACRGFA RVARTILSAY ENSBTAP00000055903/1-453 EILGGFLPFL VLVVCHVLTQ AAACRPCRRQ PGAPACRGFA RVAKTILSAY ENSTTRP00000012578/1-461 EILGGFLPFL LLLVCHVLTQ AATCRTCRRQ PGSTACRGFA RVAKTILSAY bmy_07836T0/1-507 EILGGFLPFL LLLVCHVLTQ AATCRTCRHQ PGSTACRGFA RVAKTILSAY BACU003538/1-457 EILGGFLPFL LLLICHVLTQ AATCRTCRRQ PGSTACRGFA RVAKTILSAY 301 350 ENSP00000310255/1-470 VVLRLPYQLA QLLYLAFLWD VYSGYLLWEA LVYSDYLILL NSCLSPFLCL ENSBTAP00000055903/1-453 VVLRLPYQLA QLLYLAFLWD FYPGYLLWEA LVYSDYLILL NSCLSPFLCL ENSTTRP00000012578/1-461 VVLRLPYQLA QLLYLAFLWD IYPGYLLWEA LVYSDYLILL DSCLSPFLCL bmy_07836T0/1-507 VVLRLPYQLA QLLYLAFLWD IYPGYLLWEA LVYSDYLILL DSCLSPFLCL BACU003538/1-457 VVLRLPYQLA QLLYLAFLWD IYPGYLLWEA LVYSDYLILL DSCLSPFLCL 351 400 ENSP00000310255/1-470 MASADLRTLL RSVLSSFAAA LCEERPGSFT PTEPQTQLDS EGPTLPEPMA ENSBTAP00000055903/1-453 LASTDLRALL RAMLASFAAA LCEERPGSFM PADPQTQVDS GDQTVPGPVA ENSTTRP00000012578/1-461 LASADLRALL HTVLSSFAAA LCEERPGSFT PAEPQTQAAS GDQTLPGPVA bmy_07836T0/1-507 LASADLRALL HAVLSSFAAA LCEERPGSFT PAEPQTQADS GDQTLPGPVA BACU003538/1-457 LASADLRALL HTVLSSFAAA LCEERPGSFT PAEPQTQADS RGQTLPGPVA 401 450 ENSP00000310255/1-470 EAQSQMDPVA QPQVNPTLQP RSDPTAQPQL NPTAQPQSDP TAQPQLNLMA ENSBTAP00000055903/1-453 EAEPQVNPTA Q--------P QVNPEAKQQV NPAAQPQEDD EGPPQPDSGA ENSTTRP00000012578/1-461 EAQPQVNPTA QPLLESASQP QSDSLVQPQL NPRAQPQENH EAQPQLDAGA bmy_07836T0/1-507 EAQPQVNPTA QPLLESVAQP QSDSLVQPQL NPGAQPQENH --------GA BACU003538/1-457 EAQPQVNPTA RPLLESVAQP QSDSLVQPQL NPGAQPQENH GAQRQLDARA 451 500 ENSP00000310255/1-470 QPQSDSVAQP QADTNVQTPA PAASSVPSPC DEASPTPSSH PTPGALEDPA ENSBTAP00000055903/1-453 QSQASPKAQP --------PG PTTSSAPSAC EEASSTPAMD STLEAPMNPA ENSTTRP00000012578/1-461 QPQASPEAQA --------PG APASSAPSPC DEASSAPSTD STPEVPVNLA bmy_07836T0/1-507 QPQASPEAQP --------PG PPASSAPSPC DEASSAPSTD STPEAPVNPA BACU003538/1-457 QPQASPEAQP --------PG PPASSAPSPC DEASSAPSTD STPEAPVNPA 501 550 ENSP00000310255/1-470 TPPASEGESP SSTPPEAAPG AGPT ENSBTAP00000055903/1-453 TPAASEGEGP SGAPREEAPG AGPT ENSTTRP00000012578/1-461 EPAASEGESP SSAPQEEAPG AGPT bmy_07836T0/1-507 EPAASEGESP SSAPQEEAPG AGPT BACU003538/1-457 EPAASEGESP SSPPQEEAPG AGPT