KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:34 2014 Check: 00 .. Name: ENSTTRP00000014850/1-809 Len: 1065 Check: 7872 Weight: 1.00 Name: bmy_16789T0/1-835 Len: 1065 Check: 8060 Weight: 1.00 Name: BACU009051/1-797 Len: 1065 Check: 3964 Weight: 1.00 Name: ENSP00000414202/1-881 Len: 1065 Check: 8916 Weight: 1.00 Name: ENSBTAP00000055919/1-840 Len: 1065 Check: 4105 Weight: 1.00 // 1 50 ENSTTRP00000014850/1-809 MFWKFDLHTS SHLDTLLERE DLSLPELLDE EDVLQECKVV NRKLLDFLLQ bmy_16789T0/1-835 MFWKFDLHTS SHLDTLLERE DLSLPELLDE EDVLQECKVV NRKLLDFLLQ BACU009051/1-797 MFWKFDLHTS SHLDTLLERE DLSLPELLDE EDVLQECKVV NRKLLDFLLQ ENSP00000414202/1-881 MFWKFDLHTS SHLDTLLERE DLSLPELLDE EDVLQECKVV NRKLLDFLLQ ENSBTAP00000055919/1-840 MFWKFDLHTS SHLDTLLERE DLSLPELLDE EDVLQECKVV NRKLLDFLLR 51 100 ENSTTRP00000014850/1-809 PPHLQAMVAW VTQEPPASGE ERLRYXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16789T0/1-835 PPHLQAMVAW VTQEPPASGE ERLRYKYPSV ACEILTSDVP QINDALGADE BACU009051/1-797 PPHLQAMVAW VTQEPPASGE ERLRYKYPSV ACEILTSDVP QINDALGADE ENSP00000414202/1-881 PPHLQAMVAW VTQEPPDSGE ERLRYKYPSV ACEILTSDVP QINDALGADE ENSBTAP00000055919/1-840 PLHLQAMVAW VTQEPPASGE ERLRYKYPSV ACEILTSDVP QINDALGADE 101 150 ENSTTRP00000014850/1-809 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--- ---------- bmy_16789T0/1-835 SLLHRLYGFL QSSGRLNPLL ASFFSKVMGV LINRKXXXXX XVGVGPAPAL BACU009051/1-797 SLLHRLYGFL QSSGRLNPLL ASFFSKVMGV LINRKTD--- ---------- ENSP00000414202/1-881 SLLNRLYGFL QSTGSLNPLL ASFFSKVMGI LINRKTD--- ---------- ENSBTAP00000055919/1-840 SLLHRLYGFL QSSGSLNPLL ASFFSKVMGV LINRKTD--- ---------- 151 200 ENSTTRP00000014850/1-809 -------XXX XXXXXXXXXX XXXXXXXXXX XIMDLLLRIL -CVERPQLRQ bmy_16789T0/1-835 TCQSPCPQLV SFLRKKDDFV DLLLQHIGTS AIMDLLLRLL TCVERPQLRQ BACU009051/1-797 -------QLV SFLRKKDDFV DRLLQHIGTS AIMDLLLRLL TCVERPRLRQ ENSP00000414202/1-881 -------QLV SFLRKKDDFV DLLLQHIGTS AIMDLLLRLL TCVERPQLRQ ENSBTAP00000055919/1-840 -------QLV SFLRKKDDFV DLLLQHIGTS AIMDLLLRLL TCVERPQLRQ 201 250 ENSTTRP00000014850/1-809 DVVN------ ---------- ---------- ----WLNEEK IVQRLIEQIH bmy_16789T0/1-835 DVVNVSAEGP RRGSGQGWAA GAGSVSGAPP SRPQWLNEEK IVQRLIEQIH BACU009051/1-797 DVVS------ ---------- ---------- ----WLNEEK IVQRLIEQIH ENSP00000414202/1-881 DVVN------ ---------- ---------- ----WLNEEK IVQRLIEQIH ENSBTAP00000055919/1-840 DVVN------ ---------- ---------- ----WLNEEK IVQRLIEQIH 251 300 ENSTTRP00000014850/1-809 PSKDDNQHSN ASQSLCDIIR LSREQMIQVQ DSPEPDQLLA TLEKQETIEQ bmy_16789T0/1-835 PSKDDNQHSN ASQSLCDIIR LSREQVIHMQ DSPEPDQLLA TLERQETVEQ BACU009051/1-797 PSKDDNQHSN ASQSLCDIIR LSREQVIQMQ DSPEPDQLLA TLEKQETIEQ ENSP00000414202/1-881 PSKDENQHSN ASQSLCDIIR LSREQMIQVQ DSPEPDQLLA TLEKQETIEQ ENSBTAP00000055919/1-840 PSKDDNQHSN ASQSLCDIIR LSREQMIQVQ DSPEPDQLLA TLEKQETIEQ 301 350 ENSTTRP00000014850/1-809 LLSNMLEGEQ SQSVIVSGIQ VLLTLLEPRR PRSESVTVNN FFSSVDGQLE bmy_16789T0/1-835 LLSNMLEGEQ SQSVIVSGIQ VLLTLLEPRR PRSESVIVNN FFSSMDGQLE BACU009051/1-797 LLSNMLEGEQ SQSVIVSGIQ VLLTLLEPRR PRSESVIVNN FFSSVDGQLE ENSP00000414202/1-881 LLSNMFEGEQ SQSVIVSGIQ VLLTLLEPRR PRSESVTVNS FFSSVDGQLE ENSBTAP00000055919/1-840 LLSNMLEGER SPSVLVSGIQ VLLTLLEPRR PRSESMTVNN FFSSVDGQLE 351 400 ENSTTRP00000014850/1-809 LLAQATLDNA VSSVGTLHAL RPRLSRFHQL LLEPPELEPL RTTWGTLAPP bmy_16789T0/1-835 LLAQATPDSA VSSVGTLHAL RPRLSRFHQL LLEPPELEPL RTTWGSLAPP BACU009051/1-797 LLAQGTPDSA VSSVGTLHAL RPRLSRFHQL LLEPPELEPL RTTWGSLAPP ENSP00000414202/1-881 LLAQGALEST VSSVGALHAL RPRLSCFHQL LLEPPKLEPL QMTWGMLAPP ENSBTAP00000055919/1-840 LLAQATLDSA VSNAGALHAL RPRLGCFHQL LLEPPELEPL RTTWGSLAPP 401 450 ENSTTRP00000014850/1-809 LGNTRLHVVK LLASALSASD AALTQELLAL DVPNTLLDLF FHYVFNNFLH bmy_16789T0/1-835 LGNTRLHVVK LLASALSASD AALTQELLAL DVPNTLLDLF FHYVFNNFLH BACU009051/1-797 LGNTRLHVVK LLASALSASD AALTQELLAL DVPNTLLDLF FHYVFNNFLH ENSP00000414202/1-881 LGNTRLHVVK LLASALSAND AALTHELLAL DVPNTMLDLF FHYVFNNFLH ENSBTAP00000055919/1-840 LGNTRLHVVK LLASALSAND AALTQELLAL DVPNTMLDLF FHYVFNNFLH 451 500 ENSTTRP00000014850/1-809 AQVEVCVSTM LSSGPPSNSS SDTPAQNPVV KHLLQQCRLV ERILTSWEEN bmy_16789T0/1-835 AQVEVCVSTM LSSGPPSNSS SDTPAQNPVV KH-------- ---------- BACU009051/1-797 AQVEVCVSTM LSSGPPSNSS SDTPAQNPVV KH-------- ---------- ENSP00000414202/1-881 AQVEGCVSTM LSLGPPPDSS PETPIQNPVV KHLLQQCRLV ERILTSWEEN ENSBTAP00000055919/1-840 AQVEVCVSTM LSSGPPADSG SDTPPENPVV KHLLQRCRLV ERILTSWEEN 501 550 ENSTTRP00000014850/1-809 DRVQSA-GPR KGYMGHLTRV ANALAQS--- ---------- ---------- bmy_16789T0/1-835 ---------- ---------- ---------- ---------- ---------- BACU009051/1-797 ---------- ---------- ---------- ---------- ---------- ENSP00000414202/1-881 DRVQCAGGPR KGYMGHLTRV AGALVQNTEK GPNAEQLRQL LKELPSEQQE ENSBTAP00000055919/1-840 DRVQSAGGPR KGYMGHLTSV ANALVQNXQ- ---------- ------EQRE 551 600 ENSTTRP00000014850/1-809 ---------- ---------- ---------- ---------- -KGPAEQLGQ bmy_16789T0/1-835 ---------- ---------- ---------- ---------- ---------- BACU009051/1-797 ---------- ---------- ---------- ---------- ---------- ENSP00000414202/1-881 QWEAFVSGPL AETNKKNMVD LVNTHHLHSS SDDEDDRLKE FNFPEEAVLQ ENSBTAP00000055919/1-840 RWEAFVSGPL AETNKKNTVD LVNTHHLHSS SDDEDDRLKE FNFPEEAVLQ 601 650 ENSTTRP00000014850/1-809 LLXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16789T0/1-835 ---------- ---------- ---------- ---------- ---------- BACU009051/1-797 ---------- ---------- ---------- ---------- ---------- ENSP00000414202/1-881 Q--------- ---------- ---------- ---------- ---------- ENSBTAP00000055919/1-840 Q--------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000014850/1-809 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16789T0/1-835 ---------A FMDFQMQRMT SAFIDHFGFN DEEFGEQEES VNAPFDKTAN BACU009051/1-797 ---------A FMDFQMQRMT SAFIDHFGFN DEEFGEQEES VNAPFDKTAN ENSP00000414202/1-881 ---------A FMDFQMQRMT SAFIDHFGFN DEEFGEQEES VNAPFDKTAN ENSBTAP00000055919/1-840 ---------A FMDFQMQRMT SAFIDHFGFN DEEFGEQEES VNAPFDKTAS 701 750 ENSTTRP00000014850/1-809 XXXXXXXXXX X--------- ---------- -------XXX XXXXXXXXXX bmy_16789T0/1-835 ITFSLNADDD NVSAAPTPAG GGGLQAVSSP HTPLPPQPNA NLLEICYKDR BACU009051/1-797 ITFSLNADDD N--------- ---------- -------PNA NLLEICYKDR ENSP00000414202/1-881 ITFSLNADDE N--------- ---------- -------PNA NLLEICYKDR ENSBTAP00000055919/1-840 ITFSLSADDD N--------- ---------- ---------V SCPDRCW--- 751 800 ENSTTRP00000014850/1-809 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG bmy_16789T0/1-835 IQQFDDEEED EEEG--QGSG GSDGEDGAWQ GGQLARGARL GQPPGV-RSG BACU009051/1-797 IQQFDDEEED EEEG--QGSG GSDGEDGAWQ GGQLARGARL GQPPGV-RSG ENSP00000414202/1-881 IQQFDDDEEE EDEEEAQGSG ESDGEDGAWQ GSQLARGARL GQPPGV-RSG ENSBTAP00000055919/1-840 -QQFDDDEED EEEG---GSG ESDGEDGAWQ GGHLARAGRL GQPQGVRRSR 801 850 ENSTTRP00000014850/1-809 GSTDSE-DDE DDEDDEDDED GDRRVARGRA AHL--PSPGP QPPGPSWTAT bmy_16789T0/1-835 GSTDSE-EDE DDDEDEDDED GDRRLARGRA GPTSHPSPGP QPPDPSWTAT BACU009051/1-797 GSTDSE-EDE DDEEDEDDED GDRRVARGRA GPTSHPSPGP QPPDPGWTAT ENSP00000414202/1-881 GSTDSEDEEE EDEEEEEDEE GIGCAARGGA TPLSYPSPGP QPPGPSWTAT ENSBTAP00000055919/1-840 GSTDSE---E EDDDDDEDED GR---ARGRP GPPCYPSAGR QPPGPSWTAA 851 900 ENSTTRP00000014850/1-809 FDPVPVDAPT GPQACREEEL HSGPPAPQEP RSGPLDLPTP SPAGPAAPST bmy_16789T0/1-835 FDPVPVDAPT GPQACREKEL HSGPPAPQEP RSGPPDLPAP SPAGPAAPST BACU009051/1-797 FDPVPVEAPT GPQACREKEL HSGPPAPQEP RSGPPDLPAP SPAGPAAPST ENSP00000414202/1-881 FDPVPTDAPT SPRVSGEEEL HTGPPAPQGP LSVPQGLPTQ SLASPPARDA ENSBTAP00000055919/1-840 FDPVPTDGPA GPQDCRDKE- ---------P RGEHPDLPAP SPTGPAAPST 901 950 ENSTTRP00000014850/1-809 LQLRSQDPIP SSAPQEATDG SKVAEPSAPC QALVSVGDLQ ATLRGTHSAP bmy_16789T0/1-835 LQLRSQDPIP SSAPQEATDG SKVAEPSAPC QALVSAGDLQ ATLRGTHPAP BACU009051/1-797 LQLRSQDPIP SSAPQEATDG SQVAEPSG-M AAFAVAHLLY LWAFGLTPL- ENSP00000414202/1-881 LQLRSQDPTP PSAPQEATEG SKVTEPSAPC QALVSIGDLQ ATFHGIRSAP ENSBTAP00000055919/1-840 LQLRFQDPAP ASAPQEATDG SKAAEPAASC QALLSVGDLQ ASLRGTRSAP 951 1000 ENSTTRP00000014850/1-809 SSLD------ ---------- ---------- ---------- ---------- bmy_16789T0/1-835 SSLDSATRDP ATSVPAPRAH QPPQTTEGVK SPESLGLPRS QSALALEPLP BACU009051/1-797 --------KP SLLLPILLAS VPYYGLLLGH LPPDMVLPLT AYSLVLAAM- ENSP00000414202/1-881 SSSDSATRDP STSVPASGAH QPPQTTEGEK SPEPLGLPQS QSAQALTPPP ENSBTAP00000055919/1-840 SSLDSATRDP ATSVPAPGAH RPPQTPEGEK SPESLGLPQS QSALALQPLP 1001 1050 ENSTTRP00000014850/1-809 ---------- ---------- ---------- ---------- ---------- bmy_16789T0/1-835 MPNGSAPGGP ASPGSQ---- ---------- ---------- ---------- BACU009051/1-797 LWRGLARGGS TRWGALLFTL SDAVLAWNIF VHPLPHAHLV VMTTYYAAQT ENSP00000414202/1-881 IPNGSAPEGP ASPGSQ---- ---------- ---------- ---------- ENSBTAP00000055919/1-840 MPNGSAPGGP AAPGSQ---- ---------- ---------- ---------- 1051 1100 ENSTTRP00000014850/1-809 ---------- ----- bmy_16789T0/1-835 ---------- ----- BACU009051/1-797 LITLSAFQSP RLKSN ENSP00000414202/1-881 ---------- ----- ENSBTAP00000055919/1-840 ---------- -----