KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:36 2014 Check: 00 .. Name: ENSTTRP00000006661/1-717 Len: 717 Check: 3099 Weight: 1.00 Name: ENSP00000368215/1-712 Len: 717 Check: 8281 Weight: 1.00 Name: ENSBTAP00000055932/1-448 Len: 717 Check: 914 Weight: 1.00 Name: bmy_01941T0/1-717 Len: 717 Check: 639 Weight: 1.00 Name: BACU005842/1-716 Len: 717 Check: 8367 Weight: 1.00 // 1 50 ENSTTRP00000006661/1-717 MAQNSPQLDM QVLHDLRQRF PEIPEGVVSQ CMLQNNNNLE ACCRALSQES ENSP00000368215/1-712 MAQSSPQLDI QVLHDLRQRF PEIPEGVVSQ CMLQNNNNLE ACCRALSQES ENSBTAP00000055932/1-448 MAQSSPQLDM QVLHDLRQRF PEIPEGVVSQ CMLQNNNNLE ACCRALSQES bmy_01941T0/1-717 MAQNSPQLDM QVLHDLRQRF PEIPEGVVSQ CMLQNNNNLE ACCRALSQES BACU005842/1-716 MAQNSPQLDM QVLHDLRQRF PEIPEGVVSQ CMLQNNNNLE ACCRALSQES 51 100 ENSTTRP00000006661/1-717 SKYLYMEYHS PDDNRMNRNR LLHINLGIHS PSSYHPGDGV QLNGGRTLVH ENSP00000368215/1-712 SKYLYMEYHS PDDNRMNRNR LLHINLGIHS PSSYHPGDGA QLNGGRTLVH ENSBTAP00000055932/1-448 SKYLYMEYHS PDDSRMNRNR LLHINLGIHS PSSYHPGDGV Q--------- bmy_01941T0/1-717 SKYLYMEYHS PDDNRMNRNR LLHINLGIHS PSSYHPGDGV QLNGGRTLVH BACU005842/1-716 SKYLYMEYHS PDDNRMNRNR LLHINLGIHS PSSYHPGDGV QLNGGRTLVH 101 150 ENSTTRP00000006661/1-717 SSSDGHIDPQ HAAGKQLICL VQEPHSAPAV VAATPNYNPF FMNEQNRSAA ENSP00000368215/1-712 SSSDGHIDPQ HAAGKQLICL VQEPHSAPAV VAATPNYNPF FMNEQNRSAA ENSBTAP00000055932/1-448 ---------- ---------- ---------- ---------- ---------- bmy_01941T0/1-717 SSSDGHIDPQ HAAGKQLICL VQEPHSAPAV VAATPNYNPF FMNEQNRSAA BACU005842/1-716 SSSDGHIDPQ HAAGKQLICL VQEPHSAPAV VAATPNYNPF FMNEQNRSAA 151 200 ENSTTRP00000006661/1-717 TPPSQPPQQP SSIQTGMNPS AMQGPSPPPP PPPSYMHIPR YSTNPITVTV ENSP00000368215/1-712 TPPSQPPQQP SSMQTGMNPS AMQGPS-PPP PPPSYMHIPR YSTNPITVTV ENSBTAP00000055932/1-448 ---------- ---------- ---------- ---------- ---------- bmy_01941T0/1-717 TPPSQPPQQP SSIQTGMNPS AMQGPSPPPP PPPSYMHIPR YSTNPITVTV BACU005842/1-716 TPPSQPPQQP SSIQTGMNPS AMQGPS-PPP PPPSYMHIPR YSTNPITVTV 201 250 ENSTTRP00000006661/1-717 SQNLPSGQTV PRALQILPQI PSNLYGSPGS IYIRQTSQSS SGRQTPQSTP ENSP00000368215/1-712 SQNLPSGQTV PRALQILPQI PSNLYGSPGS IYIRQTSQSS SGRQTPQSTP ENSBTAP00000055932/1-448 ---------- ---------- ---------- ---------- ---------- bmy_01941T0/1-717 SQNLPSGQTV PRALQILPQI PSNLYGSPGS IYIRQTSQSS SGRQTPQSTP BACU005842/1-716 SQNLPSGQTV PRALQILPQI PSNLYGSPGS IYIRQTSQSS SGRQTPQSTP 251 300 ENSTTRP00000006661/1-717 WQSSPQGPVP HYSQRPLPVY PHQQNYQPSQ YSPKQQQIPQ PAYHSPPPSQ ENSP00000368215/1-712 WQSSPQGPVP HYSQRPLPVY PHQQNYQPSQ YSPKQQQIPQ SAYHSPPPSQ ENSBTAP00000055932/1-448 ---------- ---------- ---------- ---------- ---------- bmy_01941T0/1-717 WQSSPQGPVP HYSQRPLPVY PHQQNYQPSQ YSPKQQQIPQ PAYHSPPPSQ BACU005842/1-716 WQSSPQGPVP HYSQRPLPVY PHQQNYQPSQ YSPKQQQIPQ PAYHSPPPSQ 301 350 ENSTTRP00000006661/1-717 CPSPFSSPQH QVQPSQLGHP SSHVFMPPSP STTPPHPYQQ GPPSYQKQGS ENSP00000368215/1-712 CPSPFSSPQH QVQPSQLG-- --HIFMPPSP STTPPHPYQQ GPPSYQKQGS ENSBTAP00000055932/1-448 ---------- -----XLGHP SSHVFMPPSP STTPPHPYQQ GPPSYQKQGS bmy_01941T0/1-717 CPSPFSSPQH QVQPSQLGHP SSHVFMPPSP STTPPHPYQQ GPPSYQKQGS BACU005842/1-716 CPSPFSSPQH QVQPSQLGHP SSHVFMPPSP STTPPHPYQQ GPPSYQKQGS 351 400 ENSTTRP00000006661/1-717 HSVAYLPYTP SSLPKGSMKK IEITVEPSQR SGTAINRSPS PISNQPSPRN ENSP00000368215/1-712 HSVAYLPYTA SSLSKGSMKK IEITVEPSQR PGTAINRSPS PISNQPSPWN ENSBTAP00000055932/1-448 HSVAYLPYTT SSLPKGSMKK IEITVEPSQR SGTAMNRSPS PISNQPSPRN bmy_01941T0/1-717 HSVAYLPYTP SSLPKGSMKK IEITVEPSQR SGTAINRSPS PISNQPSPRN BACU005842/1-716 HSVAYLPYTP SSLPKGSMKK IEITVEPSQR SGTAINRSPS PISNQPSPRN 401 450 ENSTTRP00000006661/1-717 QHSLYTATTP PSSSPSRGIS SQPKPPFSVN PVYITYTQPT GPSCAPSPSP ENSP00000368215/1-712 QHSLYTATTP PSSSPSRGIS SQPKPPFSVN PVYITYTQPT GPSCTPSPSP ENSBTAP00000055932/1-448 QHSLYTATTP PSSSPSRGIS SQPKPPFTVN PVYITYTQPT GPSCAPSPSP bmy_01941T0/1-717 QHSLYTATTP PSSSPSRGIS SQPKPPFSVN PVYITYTQPT GPSCAPSPSP BACU005842/1-716 QHSLYTASTP PSSSPSRGIS SQPKPPFSVN PVYITYTQPT GPSCAPSPSP 451 500 ENSTTRP00000006661/1-717 RMIPNPTTVF KITVGRATTE NLLNLVDQEE RSAAPEPIQP ISVIPGSGGE ENSP00000368215/1-712 RVIPNPTTVF KITVGRATTE NLLNLVDQEE RSAAPEPIQP ISVIPGSGGE ENSBTAP00000055932/1-448 RMIPNPTTVF KITVGRAMTE NLLNLVDQEE RSAAPEPIQP ISVIPGSGGE bmy_01941T0/1-717 RMIPNPTTVF KITVGRATTE NLLNLVDQEE RSAAPEPIQP ISVIPGSGGE BACU005842/1-716 RMIPNPTTVF KITVGRATTE NLLNLVDQEE RSAAPEPIQP ISVIPGSGGE 501 550 ENSTTRP00000006661/1-717 KGSHKYQRSS SSGSDDYAYT QALLLHQRAR MERLAKQLKL EKEELEQLKA ENSP00000368215/1-712 KGSHKYQRSS SSGSDDYAYT QALLLHQRAR MERLAKQLKL EKEELERLKS ENSBTAP00000055932/1-448 KGSHKYQRSS SSGSDDYAYT QALLLHQRAR MERLAKQLKL EKEELERLKA bmy_01941T0/1-717 KGSHKYQRSS SSGSDDYAYT QALLLHQRAR MERLAKQLKL EKEELEQLKA BACU005842/1-716 KGSHKYQRSS SSGSDDYAYT QALLLHQRAR MERLAKQLKL EKEELEQLKA 551 600 ENSTTRP00000006661/1-717 EVNSMEHDLM QRRLRRVSCT TAIPTPEEMT RLRSMNRQLQ INVDCTLKEV ENSP00000368215/1-712 EVNGMEHDLM QRRLRRVSCT TAIPTPEEMT RLRSMNRQLQ INVDCTLKEV ENSBTAP00000055932/1-448 EVNGMEHDLM QRRLRRVSCT TAIPTPEEMT RLRSMNRQLQ INVDCTLKEV bmy_01941T0/1-717 EVNSMEHDLM QRRLRRVSCT TAIPTPEEMT RLRSMNRQLQ INVDCTLKEV BACU005842/1-716 EVNSMEHDLM QRRLRRVSCT TAIPTPEEMT RLRSMNRQLQ INVDCTLKEV 601 650 ENSTTRP00000006661/1-717 DLLQSRXXXX XXXXXXXXXX XXXXXXXXXX XXXXXSSDTC TVERKARRIS ENSP00000368215/1-712 DLLQSRGNFD PKAMNNFYDN IEPGPVVPPK PSKKDSSDPC TIERKARRIS ENSBTAP00000055932/1-448 DLLQSRGNFD PKAMNNFYDN IEPGPVVPPK P--------- ---------- bmy_01941T0/1-717 DLLQSRGNFD PKAMNNFYDN IEPGPVVPPK PPKKDSSDTC TVERKARRIS BACU005842/1-716 DLLQSRGNFD PKAMNNFYDN IEPGPVVPPK PPKKDSSDTC TVERKARRIS 651 700 ENSTTRP00000006661/1-717 VTSRVQEDIH DTQAAAADEH PSSSKQSPRT QPRDEDYEGA PWNCDSCTFL ENSP00000368215/1-712 VTSKVQADIH DTQAAAADEH RTGSTQSPRT QPRDEDYEGA PWNCDSCTFL ENSBTAP00000055932/1-448 ---------- ---------- ------SPRT QPRDEDYEGA PWNCDSCTFL bmy_01941T0/1-717 VTSKVQEDIH DTQAAAADEH PSSSKQSPRT QPRDEDYEGA PWNCDSCTFL BACU005842/1-716 VTSKVQEDIH DTQAAAADEH PSSSKQSPRT QPRDEDYEGA PWNCDSCTFL 701 750 ENSTTRP00000006661/1-717 NHPALNRCEQ CEMPRYT ENSP00000368215/1-712 NHPALNRCEQ CEMPRYT ENSBTAP00000055932/1-448 NHPALNRCEQ CEMPRYT bmy_01941T0/1-717 NHPALNRCEQ CEMPRYT BACU005842/1-716 NHPALNRCEQ CEMPRYT