KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:37 2014 Check: 00 .. Name: ENSP00000309415/1-229 Len: 330 Check: 6701 Weight: 1.00 Name: ENSBTAP00000055957/1-242 Len: 330 Check: 3998 Weight: 1.00 Name: BACU002862/1-157 Len: 330 Check: 4568 Weight: 1.00 Name: bmy_08400T0/1-327 Len: 330 Check: 8766 Weight: 1.00 Name: ENSTTRP00000005119/1-229 Len: 330 Check: 9274 Weight: 1.00 // 1 50 ENSP00000309415/1-229 MADDFGFFSS SESGAPEAAE EDPAAAFLAQ QESEIAGIEN DEGFGAPAGS ENSBTAP00000055957/1-242 MADDFGFFSS SESGAPEAAE EDPAAAFLAQ QESEIAGIEN DEGFGAPAGS BACU002862/1-157 MLSPVLF--- ---------- ---------- ---------- ------PAG- bmy_08400T0/1-327 MADDFGFFSS TESGAPEAAE EDPAAAFLAQ QESEIAGIEN DEGFGAPAGG ENSTTRP00000005119/1-229 MADDFGFFSS TESGAPEAPE EDPAAAFLAQ QESEIAGIEN DEGFGAPAGS 51 100 ENSP00000309415/1-229 HAAPAQPGPT SGAGSEDMGT TVNGDVFQEA NGPADGYAAI AQADRLTQEP ENSBTAP00000055957/1-242 QGGLAQPGPA SGA-SEDMGA TVNGDVFQEA NGPADGYAAI AQADRLTQEP BACU002862/1-157 ---------- ----SEDMGT TVNGDVYQEA NGPADGYAAI AQVDRLTQEP bmy_08400T0/1-327 QAALAQPGPA SGASSEDMGT TVNGDVYQEA NGPADGYAAI AQVDRLTQEP ENSTTRP00000005119/1-229 QAALTQPGPA NGAGSEDMGT TVNGDVYQEA NGPADGYAAI AQVDRLTQEP 101 150 ENSP00000309415/1-229 ESIRKWREEQ RKRLQEL--- ---------- ---------- ---------- ENSBTAP00000055957/1-242 ESIRKWREEQ RKRLQEL--- ---------- ---------- ---------- BACU002862/1-157 ESIRKWREEQ RKRLQEL--- ---------- ---------- ---------- bmy_08400T0/1-327 ESIRKWREEQ RKRLQELGEG RAECVSWAGP PGPGLPTGLA LWDMVGWGSL ENSTTRP00000005119/1-229 ESIRKWREEQ RKRLQEL--- ---------- ---------- ---------- 151 200 ENSP00000309415/1-229 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000055957/1-242 ---------- ---------- ---------- ---------- ---------- BACU002862/1-157 ---------- ---------- ---------- ---------- ---------- bmy_08400T0/1-327 RLYGALPHLN VGSAEDGPRA ACRGRGEKQQ PEAQLAVPHI PPGKPLFIHL ENSTTRP00000005119/1-229 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000309415/1-229 ----DAASKV TEQEWREKAK KDLEEWNQRQ SEQVEKNKIN NRIADKAFYQ ENSBTAP00000055957/1-242 ----DAASKV MEQEWREKAK KDLEEWNQRQ SEQVEKNKIN NRIADKAFYQ BACU002862/1-157 ----DAASKV MEQEWREKAK KDLEEWNQRQ SEQVEKNKIN NR-------- bmy_08400T0/1-327 LGVADAASKV MEQEWREKAK KDLEEWNQRQ SEQVEKNKIN NRIADKAFYQ ENSTTRP00000005119/1-229 ----DAASKV MEQEWREKAK KDLEEWNQRQ SEQVEKNKIN NRIADKAFYQ 251 300 ENSP00000309415/1-229 QPDADIIGYV ---------- ----ASEEAF VKESKEETPG TEWEKVAQLC ENSBTAP00000055957/1-242 QPDADIIGYV VRGEPLPCWS ASSTASEEAF VKESKEETPG TEWEKVAQLC BACU002862/1-157 ---------- ---------- ----ASEEAF VKESKEETPG TEWEKVAQLC bmy_08400T0/1-327 QPDADIIGYV YVSPLLLC-- -KGLASEEAF VKESKEETPG TEWEKVAQLC ENSTTRP00000005119/1-229 QPDADIIGYV ---------- ----ASEEAF VKESKEETPG TEWEKVAQLC 301 350 ENSP00000309415/1-229 DFNPKSSKQC KDVSRLRSVL MSLKQTPLSR ENSBTAP00000055957/1-242 DFNPKSSKQC KDVSRLRSVL MSLKQTPLSR BACU002862/1-157 DFNPKSSKQC KDVSRLRSVL MSLKQTPLSR bmy_08400T0/1-327 DFNPKSSKQC KDVSRLRSVL MSLKQTPLSR ENSTTRP00000005119/1-229 DFNPKSSKQC KDVSRLRSVL MSLKQTPLSR