KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:38 2014 Check: 00 .. Name: ENSP00000331678/1-797 Len: 859 Check: 2700 Weight: 1.00 Name: ENSBTAP00000055960/1-793 Len: 859 Check: 4055 Weight: 1.00 Name: ENSTTRP00000005701/1-796 Len: 859 Check: 5303 Weight: 1.00 Name: bmy_04969T0/1-858 Len: 859 Check: 5083 Weight: 1.00 Name: BACU003639/1-783 Len: 859 Check: 4972 Weight: 1.00 // 1 50 ENSP00000331678/1-797 MQDGNFLLSA LQPEAGVCSL ALPSDLQLDR RGAEGPEAER LRAARVQEQV ENSBTAP00000055960/1-793 MQDGNFLLSA LQPEAGVCSL ALPSDLQLDR RGAEGPEAER LRAARVQEQV ENSTTRP00000005701/1-796 IQDGNFLLSA LQPEMGVXXX XXXXXXXXXX XXXXXXXXER LRAARVQEQV bmy_04969T0/1-858 MQDGNFLLSA LQPEMGVYSL ALPLDLQLDR RGTEGPEAER LRAARVQEQV BACU003639/1-783 MQDGNFLLSA LQPEMGVYSL ALPSDLQLDR RGTEGPEAER LRAARVQEQV 51 100 ENSP00000331678/1-797 RARLLQLGQQ PRHNGAAEPE PEAETARGTS RGQYHTLQAG FSSRSQGLSG ENSBTAP00000055960/1-793 RARLLQLGQQ PRHNGPAEPD GAAEAARGAS RAQYHTLQAG FSSRSQGLGG ENSTTRP00000005701/1-796 RARLLQLGQQ PWQNGPAQPD GAARAATGAC RAQYHTLQAG FSSRSQGRSG bmy_04969T0/1-858 RARLLQLGQQ PWQNGPAQPD GVAEAARGAC RAQYHTLQAG FSSRSQGRSR BACU003639/1-783 RARLLQLGQQ PWQNGPAQPD GVAEAARGAC RAQYHTLQAG FSSRSQGRSG 101 150 ENSP00000331678/1-797 DKTSGFRPIA KPAYSPASWS SRSAVDLSCS RRLSSAHNGG SAFGAAGYGG ENSBTAP00000055960/1-793 E-TSTFRPIA KPTYSPASWS SRSAVDLSSS RRLSSVHNGG GAFGAAGYRG ENSTTRP00000005701/1-796 D-TSIFRPVA RPACSPVSWS SRSVVDLSSG RRLSSAQSRG SALGAAGYGG bmy_04969T0/1-858 D-TSTFRPIA RPACNPVSWS SRSAVDLSSG RRLSSAQSRG SALGAAGYRG BACU003639/1-783 D-TSTFRPIA RPACNPVSWS SRSAVDVSSG RRLSSAQSGG SALGAAGYRG 151 200 ENSP00000331678/1-797 AQPTPPMPTR PVSFHERGGV GSRADYDTLS LRSLRLGPGG LDDRYSLVSE ENSBTAP00000055960/1-793 APPTAPVPAR PVSFHERGGA GSRADYDTLS LRSLRLGAGG PDDRYSVVSE ENSTTRP00000005701/1-796 ARPAAPPPTR PTSFHERGGV GSWADHDTLS LHSLSLGAGG PDDRYGVVEE bmy_04969T0/1-858 AWPAAPPPTR PMSFHERGRV GSWADHDTLS LHSLRLGAGD PDERYRVAEE BACU003639/1-783 ARPAAPPPTR PTSFHEHGRV GSWADHDTLS LRSLRLGARG PDECYRVVEE 201 250 ENSP00000331678/1-797 QLEPAATSTY RAFAYERQAS SSSSRAGGLD WPEATEVSPS RTIRAPAVRT ENSBTAP00000055960/1-793 QLEPAATSSY RAFAYERRAS SSSSRAGGLD WPEATEGPPS RTIRAPAMRT ENSTTRP00000005701/1-796 WLEPAAASPY RASASERRAS SSSGRAGGLG WLEAAEGPPS RTIRAPAVRT bmy_04969T0/1-858 QLQPAATSTY RAFASERQAG SSCGGAGGLD WPEAAEGPPS RTIRAPAMRT BACU003639/1-783 PLEPAATSAY RAFASERQAS SSCGRAGGLD WPEAAEGPPS RTIRAPAMRT 251 300 ENSP00000331678/1-797 LQRFQSSHRS RGVGGAVPGA VLEPVARAPS VRSLSLSLAD SGHLPDVHGF ENSBTAP00000055960/1-793 LQRFQSSHRS RGVAAGGPGG VLEPVTRAPS VR--SLSLGD SGHLPDMRGL ENSTTRP00000005701/1-796 LQRFQSGHRS RVAAGGVPGG VLEPVTRAPS VRSLSLSLGN SGHLPDTRGL bmy_04969T0/1-858 LQRFQSGHRS RVGAGGVPGG VLEPVIQAPP VRSLSLSLGD SGHLPDMRGL BACU003639/1-783 LQRFQSGHRS RVGAGGVPGG VLEPANRAPS VRSLSLSLGD SGHLPDTRGL 301 350 ENSP00000331678/1-797 NSYGSHRTLQ RLSSGFDDID LPSAVKYLMA SDPNLQVLGA AYIQHKCYSD ENSBTAP00000055960/1-793 DSYGGHRTLQ RLSSGFDDID LPSAVKYLMA SDPNLQVLGA AYIQHKCYSD ENSTTRP00000005701/1-796 DSYGGHRTLQ RLSSGFDDID LPSAVKYLMA SDPNLQVLGA AYIQHKCYSD bmy_04969T0/1-858 DSYGGHRTVQ RLSSGFDDID LPSAVKYLMA SDPNLQVLGA AYIQHKCYSD BACU003639/1-783 DSYGGHRTVQ RLSSGFDDID LPSAVKYLMA SDPNLQVLGA AYIQHKCYSD 351 400 ENSP00000331678/1-797 AAAKKQARSL QAVPRLVKLF NHANQEVQRH ATGAMRNLIY DNADNKLALV ENSBTAP00000055960/1-793 AAAKKQARSL QAVPRLVKLF NHANQEVQRH ATGAMRNLVY DNADNKLALV ENSTTRP00000005701/1-796 TAAKKQARSL QAVARLVKLF NHANQEVQRH ATGAMRNLVY DNADNKLALV bmy_04969T0/1-858 TAAKKQARSL QAVARLVKLF NHANQEVQRH ATGAMRNLVY DNADNKLALV BACU003639/1-783 TAAKKQARSL QAVARLVKLF NHANQEVQRH ATGAMRNLVY DNADNKLALV 401 450 ENSP00000331678/1-797 EENGIFELLR TLREQDDELR KNVTGILWNL SSSDHLKDRL ARDTLEQLTD ENSBTAP00000055960/1-793 EENGIFELLR ALREQDDELR KNVTGILWNL SSSDHLKDRL ARDTLEQLTD ENSTTRP00000005701/1-796 EENGIFELLR SLREQDDELR KNVTGILWNL SSSDHLKDRL ARDTLEQLTD bmy_04969T0/1-858 EENGIFELLR TLREQDDELR KNVTGILWNL SSSDHLKDRL ARDTLEQLTD BACU003639/1-783 EENGIFELLR TLREQDDELR KNVTGILWNL SSSDHLKDRL ARDTLEQLTD 451 500 ENSP00000331678/1-797 LVLSPLSGAG GPPLIQQNAS EAEIFYNATG FLRNLSSASQ ATRQKMRECH ENSBTAP00000055960/1-793 LVLSPLSGAG GPPLIQQNAS EAEIFYNATG FLRNLSSASQ ATRQKMRECH ENSTTRP00000005701/1-796 LVLSPFSGAR GPLLTQQNAS EAEIFYNATG FLRNLSSASQ ATRQKMRECH bmy_04969T0/1-858 LVLSPFSGAG GTPLTQQNAS EAEIFYNATG FLRNLSSASQ ATRQKMRECH BACU003639/1-783 LVLSPFSGAG GTPLTQQNAS EAEIFYNATG FLRNLSSASQ ATRQKMRECH 501 550 ENSP00000331678/1-797 GLVDALVTSI NHALDAGKCE DKSVENAVCV LRNLSYRLYD EMPPSALQRL ENSBTAP00000055960/1-793 GLVDALVTYI NHALDVGKCE DKSVENAVCV LRNLSYRLYD EMPPSALQRL ENSTTRP00000005701/1-796 GLVDSLVTYI NHALDVGKCE DKSVENAVCV LRNLSYRLYD EMPPSALQRL bmy_04969T0/1-858 GLVDSLVTYI NHALDAGKCE DKSVENAVCV LRNLSYRLYD EMPPSALQRL BACU003639/1-783 GLVDSLVTYI NHALDAGKCE DKSVENAVCV LRNLSYRLYD EMPPSALQRL 551 600 ENSP00000331678/1-797 EGRGRRDLAG APPGEVVGCF TPQSRRLREL PLAADALTFA EVSKDPKGLE ENSBTAP00000055960/1-793 EGRGRQDM-G VPPGEAVGCF TPQSRRLREL PLTADALTFA EVSKDPKGLE ENSTTRP00000005701/1-796 EGRGRRDTAG ALPGEAVGCF TPQSRRLREL PLTADALTFT EVSKDPKGLE bmy_04969T0/1-858 EGRGRRDAAG APPGEVVGCF TPQSRRLREL PLTTDALTFA EVSKDPKGLE BACU003639/1-783 EGRGRRDAAG APPGEA---- ---------L PLMADALTFA EVSKDPKGLE 601 650 ENSP00000331678/1-797 WLWSPQIVGL YNRLLQRCEL NRHTTEAAAG ALQNITAGDR RWAGVLSRLA ENSBTAP00000055960/1-793 WLWSPQIVGL YNRLLQRCEL NRHTTEAAAG ALQNITAGDR RWAGVLSRLA ENSTTRP00000005701/1-796 WLWSPQVVAL YNRLLQRCEL NRHTTEAAAG ALQNITAGDR RWAGVLSRLA bmy_04969T0/1-858 WLWSPQVVAL YNRLLQRCEL NRHTTEAAAG ALQNITAGDR RWAGVLSRLA BACU003639/1-783 WLWSPQVVAL YNRLLQRCEL NRHTTEAAAG ALQNITAGDR RWAGVLSRLA 651 700 ENSP00000331678/1-797 LEQERILNPL LDRVRTADHH QLRSLTGLIR NLSRNARNKD EMSTKVVSHL ENSBTAP00000055960/1-793 LEQERILNPL LDRVRTADHH QLRSLTGLIR NLSRNARNKD EMSTKLVSHL ENSTTRP00000005701/1-796 LEQERILNPL LDRVRTADHH QLRSLTGLIR NLSRNARNKD ELSTKLVSHL bmy_04969T0/1-858 LEQERILNPV LDRVRTADHH QLRSLTGLIR NLARNARNKD ELSTKVVSHL BACU003639/1-783 LEQERILNPL LDRVRTADHH QLRSLTGLIR NLARNARNKD ELSTKVVSHL 701 750 ENSP00000331678/1-797 IEKLPGSVGE KSPPAEVLVN IIAVLNNLVV ASPIAARDLL YFDGLRKLIF ENSBTAP00000055960/1-793 IEKLPGSVGE KSPPADVLIN IIAVLNNLVV ASPVAARDLL YFDGLRKLVF ENSTTRP00000005701/1-796 MEKLPGSPAE DSPPADVLVN IIAILNNLLA ASPVAARDLL YFDGLHKLFF bmy_04969T0/1-858 IEKLPGSLGE NSPPADVLVN IIAVLNNLVV SSPVAARDLL YFEGLRKLFF BACU003639/1-783 IEKLPGSPGE NSPPADVLVN IIAVLNNLVV ASPVAARDLL YFDGLRKLFF 751 800 ENSP00000331678/1-797 IKKKRDSPDS EKSSRAASSL LANLWQYNKL HRDFRA---- ---------- ENSBTAP00000055960/1-793 IKKKRDSPDS EKSSRAASSL LANLWQYNKL HRDFRA---- ---------- ENSTTRP00000005701/1-796 IKKTRDSPDS EKSSRAASSL LANLWQYKQL HRDFRA---- ---------- bmy_04969T0/1-858 IKNKRDSPDN EKSSRAAASL LANLWQYNKL HRDFRAVCSR GPGQAGLCVW BACU003639/1-783 IKKKRDSPDN ETSSRAASSL LANLWQYNKL HRDFRA---- ---------- 801 850 ENSP00000331678/1-797 ---------- ---------- ---------- ---------- --------KG ENSBTAP00000055960/1-793 ---------- ---------- ---------- ---------- --------KG ENSTTRP00000005701/1-796 ---------- ---------- ---------- ---------- --------KG bmy_04969T0/1-858 DVGPGWQGRT RKPMWPRAPI RPGARSQHTR GDGMRSSSAL TPGPSPPQKG BACU003639/1-783 ---------- ---------- ---------- ---------- --------KG 851 900 ENSP00000331678/1-797 YRKEDFLGP ENSBTAP00000055960/1-793 YRKEDFLGP ENSTTRP00000005701/1-796 YRKEDFLGP bmy_04969T0/1-858 YRKEDFLGP BACU003639/1-783 YRKEDFLGP