KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:41 2014 Check: 00 .. Name: ENSP00000395196/1-523 Len: 526 Check: 1979 Weight: 1.00 Name: ENSTTRP00000004950/1-523 Len: 526 Check: 6356 Weight: 1.00 Name: ENSBTAP00000055967/1-526 Len: 526 Check: 8994 Weight: 1.00 Name: bmy_06466T0/1-283 Len: 526 Check: 7179 Weight: 1.00 Name: BACU007751/1-306 Len: 526 Check: 2821 Weight: 1.00 // 1 50 ENSP00000395196/1-523 MAALLRRLLQ RERPSAASGR PVGRREANLG TDAGVAVRVR FAPSPTGFLH ENSTTRP00000004950/1-523 MAVLLKRLLH PRRPPEALGR PLRRREASLG THAGPAVRVR FAPSPTGFLH ENSBTAP00000055967/1-526 MAVLLKKLLH PGRSPAALGR LMGRREASLG TDPGAAVRVR FAPSPTGFLH bmy_06466T0/1-283 ---------- ---------- ---------- ---------- ---------- BACU007751/1-306 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000395196/1-523 LGGLRTALYN YIFAKKYQGS FILRLEDTDQ TRVVPGAAEN IEDMLEWAGI ENSTTRP00000004950/1-523 LGGLRTALYN YVFAKKHGGS FILRLEDTDQ TRLVPGAAEN IEDMLEWAGI ENSBTAP00000055967/1-526 LGGLRTALYN YIFAKKHQGS FILRLEDTDQ TRLVPGAAEN IEDMLEWAGV bmy_06466T0/1-283 ---------- ---------- ---------- ---------- ---------- BACU007751/1-306 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000395196/1-523 PPDESPRRGG PAGPYQQSQR LELYAQATEA LLKTGAAYPC FCSPQRLELL ENSTTRP00000004950/1-523 PPDESPRRGG PAGPYLQSQR LALYAQATEA LLKSGAAYPC FCSPQRLELL ENSBTAP00000055967/1-526 PPDESPRRGG PAGPYLQSQR LALYAQAAEA LLKSGAAYPC FCSPQRLELL bmy_06466T0/1-283 ---------- ---------- ---------- ---------- ---------- BACU007751/1-306 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000395196/1-523 KKEALRNHQT P-RYDNRCRN MSQEQVAQKL AKDPKPAIRF RLEQVVPAFQ ENSTTRP00000004950/1-523 KREALRNHQT P-RYDNRCRS LSEAQVAQKL AKDPKPPIRF HLEGEAPAFQ ENSBTAP00000055967/1-526 KKEALRNRQT PRRYDNRCRS LSQAQVAQKL ATDPKPAIRF RLEGEAPAFQ bmy_06466T0/1-283 ---------- ---------- ---------- ---------- ---------- BACU007751/1-306 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000395196/1-523 DLVYGWNRHE VASVEGDPVI MKSDGFPTYH LACVVDDHHM GISHVLRGSE ENSTTRP00000004950/1-523 DLVYGWNRHE VASVEGDPVI LKSDGFPTYH LACVVDDHHM GISHVLRGSE ENSBTAP00000055967/1-526 DLVYGWNRHE VASVEGDPVI LKSDGFPTYH LASVVDDHHM GISHVLRGSE bmy_06466T0/1-283 ---------- ---MEGDPVI LKSDGFPTYH LACVVIDRHM GISHVLRGSK BACU007751/1-306 ---------- ---MEGDPVI LKSDGFPTYH LACVVIDHHM GISHVLQGSE 251 300 ENSP00000395196/1-523 WLVSTAKHLL LYQALGWQPP HFAHLPLLLN RDGSKLSKRQ GDVFLEHFAA ENSTTRP00000004950/1-523 WLVSTSKHLL LYQALGWQPP HFAHLPLLLN RDGSKLSKRQ GDIFLEHFAA ENSBTAP00000055967/1-526 WLVSTSKHLL LYQALGWQPP QFAHLPLLLN RDGSKLSKRQ GDIFLEHFAA bmy_06466T0/1-283 WLVSTSKRLL LYQALGWQPP RFAHLPLLFN RDGSKLSKRQ GDVCCRRLPA BACU007751/1-306 WLVSTSKHLL LYQALGWQPL RFAHLPLLLN RDGSKLSKRQ GDVCCRRLPA 301 350 ENSP00000395196/1-523 DGFLPDSLLD IITNCGSGFA ENQMGRTLPE LITQFNLTQV TCHSALLDLE ENSTTRP00000004950/1-523 ADFLPDALLD IITSCGSGFA ENQMGRTLPE LISQFDLTRV TCHSALLDLE ENSBTAP00000055967/1-526 TGFLPDALLD IITNCGSGFA ENQMGRTLPE LITQFDLSRV TCHSALLDLE bmy_06466T0/1-283 -----DALLD IITNCGSGFA ENQMGRTLPE LITQFDLTRI TCHSALLDLE BACU007751/1-306 -----DALLD IITNCGSGFA ENQMGKTLPE LITQFDLTRI TCHSALLDLE 351 400 ENSP00000395196/1-523 KLPEFNRLHL QRLVSNESQR RQLVGKLQVL VEEAFGCQLQ NRDVLNPVYV ENSTTRP00000004950/1-523 KLPEFNRLHL RRLVSDETQR RQLVGKLQAL VEEAFGSQLQ DRNVLDAAYV ENSBTAP00000055967/1-526 KLPEFNRLHL RRLVGDETQR CQLVGQLQAL VEEAFGSQLQ DREVLDPAYV bmy_06466T0/1-283 KLPEFNKLHL RQLVSDETQR RQLVGQLQAL VEEAFGSRLQ DRHVLDAAHV BACU007751/1-306 KLPEFNKLHL CQLVSDETQR RQLVGKLQAL VEEAFGSQPQ DRHVLAAAYV 401 450 ENSP00000395196/1-523 ERILLLRQGH ICRLQDLVSP VYSYLWTRPA VGRAQLDAIS EKVDVIAKRV ENSTTRP00000004950/1-523 ERIILLRQGH ICHLQDLVSP AHSYLWTRPA VSRAQLGAIS EKVDIIAKRV ENSBTAP00000055967/1-526 ERIILLRQGH ICRLQDLVSP AYSYLWTRPA VGRAQLGAIS EKVDIIAKRV bmy_06466T0/1-283 ERIILLRQGH ICRLQDLVSP AHSYLWTRPA VGRAQLGAIS ERVDVVAKHV BACU007751/1-306 ERIIPLRQGH VCRLQDLVSP ARSYLWTRPA VGRVQLGAIS ERVDVIAKHV 451 500 ENSP00000395196/1-523 LGLLERSSMS LTQDMLNGEL KKLSEGLEGT KYSNVMKLLR MALSGQQQ-- ENSTTRP00000004950/1-523 LGLLEGPGMS LTQDMLNGEL KKLSEGLEGT KHSNVMKLLR VALSGQLQ-- ENSBTAP00000055967/1-526 LGLLEGPGTH LTQDVLNREL RKLSDGLEGI KHSNVMKLLR VALSGQQLRP bmy_06466T0/1-283 LGLLEGPGMN LTQDMLNGEL EKLSEGLEGT KHSNVLKLLR VASVDSCK-- BACU007751/1-306 LGLLEGAGMN LTQDMLNGEL KKLSEGLEGT KHSKVLKLLR VAFSRQLQ-- 501 550 ENSP00000395196/1-523 GPPVAEMMLA LGPKEVRERI QKVVSS ENSTTRP00000004950/1-523 GPPVAEMMLS LGPKEVRERI QKVLSS ENSBTAP00000055967/1-526 GPPVAEMMVS LGPKEVRERI QKVLCS bmy_06466T0/1-283 GLL------- ---------- ------ BACU007751/1-306 GPPVAEMTLS LGPKEVRERT QKVLSS