KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:27:42 2014 Check: 00 .. Name: ENSP00000354335/1-716 Len: 736 Check: 7648 Weight: 1.00 Name: BACU017273/1-709 Len: 736 Check: 339 Weight: 1.00 Name: ENSTTRP00000007186/1-717 Len: 736 Check: 7772 Weight: 1.00 Name: bmy_21026T0/1-598 Len: 736 Check: 4302 Weight: 1.00 Name: ENSBTAP00000055984/1-653 Len: 736 Check: 7180 Weight: 1.00 // 1 50 ENSP00000354335/1-716 MNNFRATILF WAAAAWAKSG KPSGEMDEVG VQKCKNALKL PVLEVLPGGG BACU017273/1-709 MNSLRDAILI WAVAAWAKMN KSLGDTDEDG FQKCRNVL-- ------PGGG ENSTTRP00000007186/1-717 MNSVRGAVLI WAVAAWAKMN KPLGDTDEDG FQKCKNALKL PVLAVLPGGG bmy_21026T0/1-598 ----MALCLA LLLVVLLAGC SGMGEQRAPG FQGCRQSLNM SVLGALPGGG ENSBTAP00000055984/1-653 ---------- ---------- ---------G FQGCKQQLNV SVLGALPGAG 51 100 ENSP00000354335/1-716 WDNLRNVDMG RVMELTYSNC RTTEDGQYII PDEIFTIPQK QSNLEMNSEI BACU017273/1-709 WDNLRNVDMG RVMSLTYTHC RTTEDGQYIV PDEVFTIPQK ESNLEMNSKI ENSTTRP00000007186/1-717 WDNLRNVDMG RVMNLTYTYC RTTEDGQYIV PDEVFTIPQK ESNLEMNSKI bmy_21026T0/1-598 WDNLRNVELG LVLRRDYSQC LTTEDGEYLI PDRVQVVPRR ESIVETRAEL ENSBTAP00000055984/1-653 WDNLRNLELG LVLGRAYSQC LTTEDGEYLI PDGMLAVPRR ETVVQTRADL 101 150 ENSP00000354335/1-716 LESWANYQSS TSYSINTELS LFSKVNGKFS TEFQRMKTLQ VKDQAITTRV BACU017273/1-709 LESWENYQSS TSYSINMELS LFSKVNGKFS PEFQRMKTLQ VKDQAVTTQV ENSTTRP00000007186/1-717 LESWENYQSS TSYSINMELS LFSKVNGKFS PEFQRMKTLQ VKDQAVTTQV bmy_21026T0/1-598 IDHWVNYTDT WAASINAELS FLPDLNDGHD ---------- ---------L ENSBTAP00000055984/1-653 MDSWVNYTDA WAASVNAEFS FLSFLNGKFS AECQNVRRYS LQYQTITTRV 151 200 ENSP00000354335/1-716 QVRNLVYTVK INPTLELSSG FRKELLDISD RLENNQTRMA TYLAELLVLN BACU017273/1-709 QVRNLVYTVK INPDAELSWG FKKDLMDIAE RLENNQTRMA TYLAELLVLN ENSTTRP00000007186/1-717 QVRNLVYTVK INPDAELSWG FKKELMDISE RLEKNQTRMA TYLAELLVLN bmy_21026T0/1-598 QIRHGIYSVK ---APE-NPD FLRHLLTLSD HLENNQTRGA EYLAEMLVLR ENSBTAP00000055984/1-653 QRRHSIYSVR VRGTPDFHPD FRQRLLTLSD HLENNQTREA EYLAEMLVFA 201 250 ENSP00000354335/1-716 YGTHVTTSVD AGAALIQEDH LRASFLQDSQ SSRSAVTASA GLAFQNTVNF BACU017273/1-709 YGTHVITSVD AGAALIQEDH IRSSLLQDSQ SSRSAVTASA GITFLNIVNF ENSTTRP00000007186/1-717 YGTHVITSVD AGAALIQEDH IRSSLLQDSQ NSRSAVTASA GITFLNIVNF bmy_21026T0/1-598 YGTHVLTDVE AGAALVQEDQ VRRELVDSEA GDKINITYAA SALFVHAVNA ENSBTAP00000055984/1-653 YGTHVLTEVE VGATLVQEDQ VSRELVGNED KDRLNVTFAA SVLFDRKVGV 251 300 ENSP00000354335/1-716 KFEENYTSQN VLTKSYLSNR TNSRVQSIGG VPFYPGITLQ AWQQGITNHL BACU017273/1-709 KFEENYTSQN AFTKSYLSNR TNSRVQSIGG LPFYPGITLQ TWQQGITNHL ENSTTRP00000007186/1-717 KFEENHTSQN AFTKSYLSNR TNSRVQSIGG LPFYPGITLQ TWQQGITNHL bmy_21026T0/1-598 GDGLSWQAQS RLLQNYVPNT VASKMHSHGG VPFYPGITLQ KWQEGIGHWL ENSBTAP00000055984/1-653 GDAVSWDKES QLVQAYQRGT VASKIHSRGG PPFYEGLTLQ KWQEGVANRL 301 350 ENSP00000354335/1-716 VAIDRSGLPL HFFINPNMLP DLPGPLVKKV SKTVETAVKR YYTFNTYPGC BACU017273/1-709 VAMDRAGLPL YFFINPDRLP DLPGPLVKKL SKTVGTAVRC YYAFNTYPGC ENSTTRP00000007186/1-717 VAMDRAGLPL YFFINPDRLP DLPGPLVKKL SNTVETAVRR YYTFNTYPGC bmy_21026T0/1-598 VAIGRSGPPL SVLLQPEALP ELPVPAVRR- ------AIHR YYAVNTHPGC ENSBTAP00000055984/1-653 VAIGRSGLPL PALLQPEALP ELPAPAVRRV EAAVSRAIGR YYEVNMHPGC 351 400 ENSP00000354335/1-716 TDLNSPNFNF QANTDDGSC- EGKMTNFSFG GVYQECTQLS GNRDVLLCQK BACU017273/1-709 TDIKSPNFNF QANMDDGSC- EGKMTNFSFG GVYQECTQFS GNEVVQLCQN ENSTTRP00000007186/1-717 TDVNSPNFNF QANMDDGSC- EGKMTNFSFG GVYQECTQFS GNEVVQLCRN bmy_21026T0/1-598 LKLGAPTFDP QANVDDGSCG GRRHASFSFM GVFPECEAVS GRHADHLCRA ENSBTAP00000055984/1-653 VKRGAPNFDP LANVDDGSCT DGQHANFSFG GVFQECEAIT GPEGGRLCKP 401 450 ENSP00000354335/1-716 LEQKNPLTGD FSCPSGYSPV HLLSQIHEEG YNHLECHRKC --TLLVF--C BACU017273/1-709 LEQKNPLTGD FSCPSGYTPV QLLSQTHEEG YNHLECSQKC --TLLIF--C ENSTTRP00000007186/1-717 LEQKNPLTGD FSCPSGYTPV QLLSQTHEEG YNHLECSRKC --TLLIF--C bmy_21026T0/1-598 YPIPNPLTGR ASCPANYTAS ALSSGLKTWS EAGPECRQHC RRCWLFFRCC ENSBTAP00000055984/1-653 YTILNPLTGQ TSCPANYTAS LLSSEVKVWS ERSYQCWPQC QSCWLIFTCC 451 500 ENSP00000354335/1-716 KTVCEDVFQV AKAEFRAFWC VASS-QVPEN SGLLFGGLFS SKSINPMTNA BACU017273/1-709 KRVCEDVFRV AKAEFRAFWC VASG-QVPEN SGLLFGGLFS GKSINPLTNA ENSTTRP00000007186/1-717 KTVCEDVFRV AKAEFRALWC AASG-QVPEN SGLLFGGLFS DKSINPLTNA bmy_21026T0/1-598 WTXCATHEHR NAASLAASWC APSGAPLPAP AGLLFGGLYS PGNPNPLPGS ENSBTAP00000055984/1-653 HRMCGNLEIQ RVVRVNASWC APSGATPTAA PGLLFGGLYS PGRPNPRTGA 501 550 ENSP00000354335/1-716 QSCPAGYFPL RLFENLKVCV SQDYELGSRF AVPFGGFFSC TVGNPLVDP- BACU017273/1-709 QSCPAGYFPL RLFENLKVCA SQDYELGYRF SVPFGGFFSC AVGNPLVDS- ENSTTRP00000007186/1-717 QSCPAGYFPL RLFENLKVCA SQDYELGYRF SVPFGGFFSC AVGNPLVDS- bmy_21026T0/1-598 QACPSHFYPL TLFGDLKVCV SSDSELGTAP AVPFGGFFSC QAGNPLAGLG ENSBTAP00000055984/1-653 QACPSSFFPL TLLGDLKVCV SSDWELGVAH AVPFGGFFSC QVGNPLAAQ- 551 600 ENSP00000354335/1-716 ---------- AISRDLGAPS LKKCPGGFSQ HPALISDGCQ VSYCVKSGLF BACU017273/1-709 ---------- AMYKDLGAPS LKKCPGGFSQ HLALISDGCQ VSYCVKAGLF ENSTTRP00000007186/1-717 ---------- VMDKDLGAPS LKKCPGGFSQ HLALISDGCQ VSYCVKAGLF bmy_21026T0/1-598 KGQSPGLMKE VFYQDSPTDF PMKCPAGYSQ HQAYLSDGCQ ILYCLRTGAL ENSBTAP00000055984/1-653 ---------- ---------- PMTCPAGYSQ HPAYLSSGCQ ILYCLRAGFL 601 650 ENSP00000354335/1-716 TGGSLPPARL PPFT-RPPLM SQAATNTV-I VTNSENARSW IKDSQTHQWR BACU017273/1-709 TGGSLPPVRL PPYT-QPPLM SQAATNTV-L VTNLETASSW VKDSQSHQWR ENSTTRP00000007186/1-717 TGGSLPPVRL PPYT-QPPLM SQAATNTV-L VTNLETASSW IKDSQTHQWR bmy_21026T0/1-598 LDQQQAAVRM PPFIPHPPLA QQKQHPQA-- ---------- ---------- ENSBTAP00000055984/1-653 LNPQQLMIRL PPFAARPSLL GNSSGLGVSV LVDASGQRAW VKLQGSSRWR 651 700 ENSP00000354335/1-716 LGEPIELRRA MNVIHGDGGG LSGGAAAGVT VGVTTILAVV ITLAIYGTRK BACU017273/1-709 LGEPLELRRA MKVIHGDGSG LSGGAAAGVT LGVTTVLAAV IALAIYGTRK ENSTTRP00000007186/1-717 LGEPLELRRA MKVIHGDGSG LSGGAAAGVT LGITTVLAAV IALAIYGTRK bmy_21026T0/1-598 ---------- ---------- --------VC PG-------- ---------- ENSBTAP00000055984/1-653 QADIHDPSVA AQLRDQGGSQ PSAGAVVGAC LGAVLGVVAL ALGVTWGFRR 701 750 ENSP00000354335/1-716 FKKKAYQAI- EERQSLVPGT AATGDTTYQE QGQSPA BACU017273/1-709 YKKRGYQAVQ DERQSLVTGT VVNGDALDQE QVQSPA ENSTTRP00000007186/1-717 YKKRGYQAVQ DERQSLVTDT AVHGDALDQE QVQSPA bmy_21026T0/1-598 ---------- ---------- ---------- ------ ENSBTAP00000055984/1-653 YQK------- ---------- ---------- ------