KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:27:43 2014 Check: 00 .. Name: BACU006236/1-758 Len: 1129 Check: 7245 Weight: 1.00 Name: ENSTTRP00000000546/1-744 Len: 1129 Check: 4515 Weight: 1.00 Name: bmy_10701T0/1-1108 Len: 1129 Check: 1880 Weight: 1.00 Name: ENSBTAP00000055986/1-744 Len: 1129 Check: 9618 Weight: 1.00 // 1 50 BACU006236/1-758 ---------- ---------- -------MVT SLNEDNESVT VEWIENGDTK ENSTTRP00000000546/1-744 MATANFGKIQ IGIYVEIKRS DGRIHQAMVT SLNEDNESVT VEWIENGDTK bmy_10701T0/1-1108 ---MEF---- --VILESLLA HSRIHQAMVT SLNEDNESVT VEWIENGDTK ENSBTAP00000055986/1-744 MATANFGKIQ IGIYVEIKRS DGRIHQAMVT SLNEDNESVT VEWIENGDTK 51 100 BACU006236/1-758 GKEIDLESIF SLNPDLVPDE EIEPSPETPP PPASSAKVNK IVKN------ ENSTTRP00000000546/1-744 GKEIDLESIF SLNPDLVPDE EIEPSPETPP PPASSAKVNK IVK------- bmy_10701T0/1-1108 GKEIDLESIF SLNPDLVPDE EIEPSPETPP PPASSAKVNK IVKSGYEKSV ENSBTAP00000055986/1-744 GKEIDLESIF SLNPDLVPDE DIEPSPETPP PPTSSAKVNK IVK------- 101 150 BACU006236/1-758 ---------- ---------- ---------- STYNVSVSTW MVMVEEFKQG ENSTTRP00000000546/1-744 ---------- ---------- ---------- ---------- ---------- bmy_10701T0/1-1108 KARLFHNLLG VYTEGADIDV LCVAPRHVDR SDFFTSFYDK LKLQEEVKDL ENSBTAP00000055986/1-744 ---------- ---------- ---------- ---------- ---------- 151 200 BACU006236/1-758 LAITDE---- ---------- ---------- ---------- ---------- ENSTTRP00000000546/1-744 ---------- ---------- ---------- ---------- ---------- bmy_10701T0/1-1108 RAVEEAFVPV IKLCFDGIEI DILFARLALQ TIPEDLDLRD DRSAATEKQC ENSBTAP00000055986/1-744 ---------- ---------- ---------- ---------- ---------- 201 250 BACU006236/1-758 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000546/1-744 ---------- ---------- ---------- ---------- ---------- bmy_10701T0/1-1108 LKWVGLVESK IRILVGSSEK NEFITLAHVN PQTFPAPKEN PDKEEFCTMW ENSBTAP00000055986/1-744 ---------- ---------- ---------- ---------- ---------- 251 300 BACU006236/1-758 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000546/1-744 ---------- ---------- ---------- ---------- ---------- bmy_10701T0/1-1108 VNSSESSGGT SSESIPQTAT QPAISSPPKP VVSRVVSSTG LVNPPPRPSG ENSBTAP00000055986/1-744 ---------- ---------- ---------- ---------- ---------- 301 350 BACU006236/1-758 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000546/1-744 ---------- ---------- ---------- ---------- ---------- bmy_10701T0/1-1108 NAATKTPNPI VGVKRTFSPH KEESPKKTKT EEDETKFPLP LVFKLDAIVQ ENSBTAP00000055986/1-744 ---------- ---------- ---------- ---------- ---------- 351 400 BACU006236/1-758 ---ILLSKAE WSKLFEAPNF FQ-------- --KYKHYIVL LASAPTEKQR ENSTTRP00000000546/1-744 ---------- ---------- ---------- ---NRRTVAS IKNDPPPRDN bmy_10701T0/1-1108 WCTVVLQRKD KSTSSSVPMS FHNLEIRLLL SHNNRRTVAS IKNDPPPRDN ENSBTAP00000055986/1-744 ---------- ---------- ---------- ---NRRTVAS IKNEPPPRDN 401 450 BACU006236/1-758 L--------- ---------- ---------- -----EWVGL VESKIRIL-- ENSTTRP00000000546/1-744 R--------- ---------- ---------- ------VVGS ARARPSQLPE bmy_10701T0/1-1108 RGKNLPINFA YCPDKIDIIL ISQHNNVSGI KKMIYKVVGS ARARPSQLPE ENSBTAP00000055986/1-744 R--------- ---------- ---------- ------VVGS ARARPSQLPE 451 500 BACU006236/1-758 -VGSLEKNEF ---ITLAHVN PQTFPAP--- -----KENPD KNFAQYTVYR ENSTTRP00000000546/1-744 QSSSAQQNGS VSDISPVQAA KKEFGPPX-- -----XXXXX XXXXXXXXXX bmy_10701T0/1-1108 QSSSAQQNGS VSDISPVQAA KKEFGPPSLL KQLITRRKSN CVKEVEKLQE ENSBTAP00000055986/1-744 QSSSAQQNGS VSDISPVQAA KKEFGPPS-- -----RRKSN CVKEVEKLQE 501 550 BACU006236/1-758 QAINSKMFEV DMKIAAVHDV DATNPNYEIM CMIRDFRGSL DYRPLTTADP ENSTTRP00000000546/1-744 XXXXXXXXXX XXXXXXXXDV DATNPNYEIM CMIRDFRGSL DYRPLTTADP bmy_10701T0/1-1108 KREKRRLQQQ ELREKRAQDV DATNPNYEIM CMIRDFRGSL DYRPLTTADP ENSBTAP00000055986/1-744 KREKRRLQQQ ELREKRAQDV DATNPNYEIM CMIRDFRGSL DYRPLTTADP 551 600 BACU006236/1-758 IDEHRICVCV RKRPLNKKET QMKDLDVITI PSKDVVMVHE PKQKVDLTRY ENSTTRP00000000546/1-744 IDEHRICVCV RKRPLNKKET QMKDLDVITI PSKDVVMVHE PKQKVDLTRY bmy_10701T0/1-1108 IDEHRICVCV RKRPLNKKET QMKDLDVITI PSKDVVMVHE PKQKVDLTRY ENSBTAP00000055986/1-744 IDEHRICVCV RKRPLNKKET QMKDLDVITI PSKDVVMVHE PKQKVDLTRY 601 650 BACU006236/1-758 LENQTFRFDY AFDDSAPNEM VYRFTARPLV ETIFERGMAT CFAYGQTGSG ENSTTRP00000000546/1-744 LENQTFRFDY AFDDSAPNEM VYRFTARPLV ETIFERGMAT CFAYGQTGSG bmy_10701T0/1-1108 LENQTFRFDY AFDDSAPNEM VYRFTARPLV ETIFERGMAT CFAYGQTGSG ENSBTAP00000055986/1-744 LENQTFRFDY AFDDSAPNEM VYRFTARPLV ETIFERGMAT CFAYGQTGSG 651 700 BACU006236/1-758 KTHTMGGDFS GKNQDCSKGI YALA------ ---------A RDVFLMLKKP ENSTTRP00000000546/1-744 KTHTMGGDFS GKNQDCSKGI YALA------ ---------A RDVFLMLKKP bmy_10701T0/1-1108 KTHTMGGDFS GKNQDCSKGI YALAGGLEIR FGSIVQNFKA RDVFLMLKKP ENSBTAP00000055986/1-744 KTHTMGGDFS GKNQDCSKGI YALA------ ---------A RDVFLMLKKP 701 750 BACU006236/1-758 NYKKLELQVY ATFFEIYSGK VFDLLNRKTK LRVLEDGKQQ VQVVGLQERE ENSTTRP00000000546/1-744 NYKKLELQVY ATFFEIYSGK VFDLLNRKTK LRVLEDGKQQ VQVVGLQERE bmy_10701T0/1-1108 NYKKLELQ-- ---------- VFDLLNRKTK LRVLEDGKQQ VQVVGLQERE ENSBTAP00000055986/1-744 NYKKLELQVY ATFFEIYSGK VFDLLNRKTK LRVLEDGKQQ VQVVGLQERE 751 800 BACU006236/1-758 VKCVEDVLKL IDIGNSCRTS GQTSANAHSS RSHAVFQIIL RRKGKLHGKF ENSTTRP00000000546/1-744 VKCVEDVLKL IDIGNSCRTS GQTSANAHSS RSHAVFQIIL RRKGKLHGKF bmy_10701T0/1-1108 VKCVEDVLKL IDIGNSCRTS GQTSANAHSS RSHAVFQIIL RRKGKLHGKF ENSBTAP00000055986/1-744 VKCVEDVLKL IDIGNSCRTS GQTSANAHSS RSHAVFQIIL RRKGKLHGKF 801 850 BACU006236/1-758 SLIDLAGNER GADTSSADRQ TRLEGAEINK SLLALK---- -----ECIRA ENSTTRP00000000546/1-744 SLIDLAGNER GADTSSADRQ TRLEGAEINK SLLALK---- -----XXXXX bmy_10701T0/1-1108 SLIDLAGNER GADTSSADRQ TRLEGAEINK SLLALKDLWE HFYYAECIRA ENSBTAP00000055986/1-744 SLIDLAGNER GADTSSADRQ TRLEGAEINK SLLALK---- -----ECIRA 851 900 BACU006236/1-758 LGRNKPHTPF RASKLTQVLR DSFIGENSRT CMIATISPGM ASCENTLNTL ENSTTRP00000000546/1-744 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXIATISPGM ASCENTLNTL bmy_10701T0/1-1108 LGRNKPHTPF RASKLTQVLR DSFIGENSRT CMIATISPGM ASCENTLNTL ENSBTAP00000055986/1-744 LGRNKPHTPF RASKLTQVLR DSFIGENSRT CMIATISPGM ASCENTLNTL 901 950 BACU006236/1-758 RYANRVKEFG ISPSDIPFSQ GSGSRPDLSP SYEYDDFSPS ITR------- ENSTTRP00000000546/1-744 RYANRVKEFG ISPSDIPFSQ GSGSRPDLSP SYEYDDFSPS ITR------- bmy_10701T0/1-1108 RYANRVKEFG ISPSDIPFSQ GSGSRPDLSP SYEYDDFSPS ITRWWLYCMI ENSBTAP00000055986/1-744 RYANRVKEFG ISPSDIPFSQ GSGSRPDLSP SYEYDDFSPS ITR------- 951 1000 BACU006236/1-758 ----VKELTV DPTAAGDVRP IMHHPPNQID DLEAQWGVGS SPQRDDLKLL ENSTTRP00000000546/1-744 ----VKELTV DPTAASDVRP IMHHPPNQID DLEAQWGVGS SPQRDDLKLL bmy_10701T0/1-1108 FIFMVKELTV DPTAAGDVRP IMHHPPNQID DLEAQWGVGS SPQRDDLKLL ENSBTAP00000055986/1-744 ----VKELTV DPTAAGDVRP IMHHPPNQID DLEAQWGVGS SPQRDDLKLL 1001 1050 BACU006236/1-758 CEQNEEEVSP QLFTFHEAVS QMVEMEEQVV EDHRAVFQ-- ---------- ENSTTRP00000000546/1-744 CEQNEEEVSP QLFTFHEAVS QMVEMEEQVV EDHRAVFQ-- ---------- bmy_10701T0/1-1108 CEQNEEEVSP QLFTFHEAVS QMVEMEEQVV EDHRAVFQLS VYRGVELLPS ENSBTAP00000055986/1-744 CEQNEEEVSP QLFTFHEAVS QMVEMEEQVV EDHRAVFQ-- ---------- 1051 1100 BACU006236/1-758 ------ESIR WLEDEKALLE MTEEVDYDVD SYATQLEAIL EQKIDILTEL ENSTTRP00000000546/1-744 ------ESIR WLEDEKALLE MTEEVDYDVD SYATQLEAIL EQKIDILTEL bmy_10701T0/1-1108 TTPFFMESIR WLEDEKALLE MTEEVDYDVD SYATQLEAIL EQKIDILTEL ENSBTAP00000055986/1-744 ------ESIR WLEDEKALLE MTEEVDYDVD SYATQLEAIL EQKIDILTEL 1101 1150 BACU006236/1-758 RDKVKSFRAA LQEEEQASKQ INPKRPRAL ENSTTRP00000000546/1-744 RDKVKSFRAA LQEEEQASKQ INPKRPRAL bmy_10701T0/1-1108 RDKVKSFRAA LQEEEQASKQ INPKRPRAL ENSBTAP00000055986/1-744 RDKVKSFRAA LQEEEQASKQ INPKRPRAL