KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 18:27:44 2014  Check: 00 ..

 Name: BACU017657/1-311          Len:    311  Check:  8710  Weight:  1.00
 Name: bmy_22130T0/1-152         Len:    311  Check:  2391  Weight:  1.00
 Name: ENSP00000397798/1-184     Len:    311  Check:  5660  Weight:  1.00
 Name: ENSBTAP00000055998/1-187  Len:    311  Check:  8913  Weight:  1.00

//


                          1                                                   50
BACU017657/1-311          MGLAGGTGRL WWFPTPEVQC LRGEWWLRTQ RIXXXXXXXG GIKSSRVEAF 
bmy_22130T0/1-152         --------MV RYSPDPENPT ---------- ---------- ---------- 
ENSP00000397798/1-184     --------MV RYSLDPENPT ---------- ---------- ---------- 
ENSBTAP00000055998/1-187  -----PLKMV RYSLDPENPT ---------- ---------- ---------- 


                          51                                                 100
BACU017657/1-311          IQWLNVSVSS SSSAALHAAC KSRGSNLRVH FKNTRETAQA IKGMHIRKAT 
bmy_22130T0/1-152         ---------- -------KSC KSRGSNLRVH FKNTRETAQA IKGTHIRKAT 
ENSP00000397798/1-184     ---------- -------KSC KSRGSNLRVH FKNTRETAQA IKGMHIRKAT 
ENSBTAP00000055998/1-187  ---------- -------KSC KSRGSNLRVH FKNTRETAQA IKGMHIRKAT 


                          101                                                150
BACU017657/1-311          KYLKDVTLKK QCVPFRRYNG GVGRCAQAKQ WGWTQGRWPK KSAEFLLHML 
bmy_22130T0/1-152         KYLKDATLKK QCVPFHHYNG G--------- ---------- ---------- 
ENSP00000397798/1-184     KYLKDVTLQK QCVPFRRYNG GVGRCAQAKQ WGWTQGRWPK KSAEFLLHML 
ENSBTAP00000055998/1-187  KYLKDVTLKK QCVPFHRYNG GVGKCAQAKQ WGWTQGRWPK KSAEFLLHMR 


                          151                                                200
BACU017657/1-311          KNAESNAELK GLDVDSLVIE HIQVNKAPKM RRRTYRAHGR INPYMSSPCH 
bmy_22130T0/1-152         --AESNAELK GLDVNSLVIE HIQVNKAPRM GCRTYRAHGQ INPYMSSPCH 
ENSP00000397798/1-184     KNAESNAELK GLDVDSLVIE HIQVNKAPKM RRRTYRAHGR INPYMSSPCH 
ENSBTAP00000055998/1-187  RNAESNAELK GLDVDSLVIE HIQVNKAPKM RRRTYRAHGW INPYMSSPCH 


                          201                                                250
BACU017657/1-311          IEMILTEKEQ IVPKPEEEVA QKKKRGHCCW GLVAVGERGR VGPGCGRGFG 
bmy_22130T0/1-152         TEMILTEKEQ IVPKPEEEVA QKKK------ ---------- ---------- 
ENSP00000397798/1-184     IEMILTEKEQ IVPKPEEEVA QKKK------ ---------- ---------- 
ENSBTAP00000055998/1-187  IEMILTEKEQ IVPKPEEEVA QKKK------ ---------- ---------- 


                          251                                                300
BACU017657/1-311          ALRVLLPSRR MWPRKAIRES NDKNKGKIDC KLCILSSVSH STSNMRPLAI 
bmy_22130T0/1-152         -----ISQKK LKKQKLMAQ- ---------- ---------- ---------- 
ENSP00000397798/1-184     -----ISQKK LKKQKLMARE ---------- ---------- ---------- 
ENSBTAP00000055998/1-187  -----ISQKK LKKQKLMARE ---------- ---------- ---------- 


                          301                                                350
BACU017657/1-311          LFALNLVLVN V 
bmy_22130T0/1-152         ---------- - 
ENSP00000397798/1-184     ---------- - 
ENSBTAP00000055998/1-187  ---------- -